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Conserved domains on  [gi|1917171638|gb|QOL11847|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Grallaria cajamarcae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.28e-143

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.44  E-value: 4.28e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1917171638 321 VNTLTTTLMTLTLVLLPLSPMTSTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.28e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.44  E-value: 4.28e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1917171638 321 VNTLTTTLMTLTLVLLPLSPMTSTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 3.13e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 3.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LVQATASALLLF-SSMTNAwFTGQWDITQLTY 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  92 PTS------------CLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPT 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 153 LLTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTL--LTFYL--YCLMTTTIFFTL-----NTTK 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171638 224 TLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.20e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.91  E-value: 4.20e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  23 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  91 YPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPT------LLTLLAITSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 165 GGWTGLNQTQIRKILAFSSISHLGWMTVII----IYNPKLTLLTFYLYCLMTTTIF-----FTLNTTKTLKLSTMTTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171638 236 KIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.01e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 81.53  E-value: 6.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQLT-- 90
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  91 ----------YPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPTL 153
Cdd:TIGR01770 192 lsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 154 LTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGW--MTVIIIYNPKLTLLTFYL--YCLMTTTIFFTL------NTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171638 224 TLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.28e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 408.44  E-value: 4.28e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1917171638 321 VNTLTTTLMTLTLVLLPLSPMTSTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-320 2.84e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 347.95  E-value: 2.84e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSlNPTLLTLLAIT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 5.36e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 342.29  E-value: 5.36e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAIT 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1917171638 321 VNTLTTTLMTLTLVLLplsPMTSTII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLL---PITPTIL 343
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-316 2.24e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 299.84  E-value: 2.24e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAIT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPnSVNYMKL-WQ 316
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKMkWQ 316
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-317 1.52e-87

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 267.22  E-value: 1.52e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAIT 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQT 317
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT 317
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 10-322 3.25e-72

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 227.89  E-value: 3.25e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  10 IMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQL 89
Cdd:MTH00041   10 ITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGP 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  90 TYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAITSTALGGWTG 169
Cdd:MTH00041   90 LNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 170 LNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSLTATLMLTLL 249
Cdd:MTH00041  170 LNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSIL 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171638 250 SLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKPVN 322
Cdd:MTH00041  250 SLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNIT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-319 6.21e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 172.32  E-value: 6.21e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGqwditqLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTShslNPTLLTLLAIT 160
Cdd:MTH00160   82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 161 STALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171638 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCAtITLPPNSVNYMKLWQTNK 319
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNK 310
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-302 1.45e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 150.42  E-value: 1.45e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   1 MSPQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWF 80
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  81 TGQWDITqltyptscLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-TLLTLLAI 159
Cdd:MTH00144   81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISV 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 160 TSTALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAwTKIPS 239
Cdd:MTH00144  153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYK 231

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171638 240 LTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATI 302
Cdd:MTH00144  232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-310 6.61e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 148.77  E-value: 6.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  12 SLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSmtnawfTGQWDITQLTY 91
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  92 PTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAITSTALGGWTGLN 171
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 172 QTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSLTATLMLTLLSL 251
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171638 252 AGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYcATITLPPNSVN 310
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-298 4.38e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.18  E-value: 4.38e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  12 SLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMtnAWFTGQWditqlTY 91
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  92 PTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHslNPTLLTLLAITSTALGGWTGLN 171
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 172 QTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLYCLMTTTIFFTLNTTKTLKLSTMTTAWTKIPSLTATLMLTLLSL 251
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1917171638 252 AGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 5.77e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 92.40  E-value: 5.77e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  13 LTLGTTITISSNHWMMAWTGLEINTLAILPLI-SKPHHPRAI*******LVQATASALLLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  79 WFTGQWDITQLTYPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNptLLTLLA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 159 ITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVII----IYNPKLTLLTFYLYCLMTTTIF---FTLNTTKTLkLSTMT 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171638 232 TAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 3.13e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 3.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LVQATASALLLF-SSMTNAwFTGQWDITQLTY 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  92 PTS------------CLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPT 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 153 LLTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTL--LTFYL--YCLMTTTIFFTL-----NTTK 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171638 224 TLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.20e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.91  E-value: 4.20e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  23 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  91 YPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPT------LLTLLAITSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 165 GGWTGLNQTQIRKILAFSSISHLGWMTVII----IYNPKLTLLTFYLYCLMTTTIF-----FTLNTTKTLKLSTMTTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171638 236 KIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-296 8.08e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 83.91  E-value: 8.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  10 IMSLTLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQ 88
Cdd:MTH00199  103 ILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQG 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  89 LTYPTSC----LLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTllAITSTAL 164
Cdd:MTH00199  183 INSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 165 GGWTGLNQTQIRKILAFSSISHLGWMT--VIIIYNPKLTLLTFYL--YCLMTTTIFF---TLNTTKTLkLSTMTTAWTKI 237
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFILfgVAIGSFESIQASLIYMiiYVIMSICSFSiilSLKLTKGL-IVEVSGLSRKN 339

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171638 238 PSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00199  340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.01e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 81.53  E-value: 6.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQLT-- 90
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  91 ----------YPTSCLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPTL 153
Cdd:TIGR01770 192 lsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 154 LTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGW--MTVIIIYNPKLTLLTFYL--YCLMTTTIFFTL------NTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171638 224 TLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 6.06e-17

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 81.41  E-value: 6.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQLTYP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  93 TS------------CLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLP-------PITLLLLTSHSLNPTL 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafavllrLLVVAFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 154 LTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTL--LTFYL--YCLMTTTIF--FTLNTTKTLKL 227
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171638 228 STMTT----AWTKiPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:PRK05777  353 ESISDfaglSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-302 1.34e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.81  E-value: 1.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638   3 PQAKLMSIMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******---------LVQATASALLLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHFPSPGNTppesglkywILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  74 SMTNAWFTGQ----WDITQLTYPTS----------CLLLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 140 TLLLLTSHSLNptLLTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVII---IYNPKLTLLTFYLYCLMTTTIF 216
Cdd:MTH00198  347 ILLTSLVITSK--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagTYESLQASWTYAVTYLVSALAS 424

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 217 FTL----------------------NTTKTLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQE 274
Cdd:MTH00198  425 FTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1917171638 275 MTPTATIIALLSLLGL-------FFYLRLAycATI 302
Cdd:MTH00198  505 FSSSLSIYYLVALFAIictcisaFYYIRIV--ATI 537
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 9.53e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 68.64  E-value: 9.53e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  30 WTGLEINTLAILPLISKPHHPRAI*******LVQATASALLLFSSMTNAWFTGQWDITQLTY----------PTSCLLLT 99
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 100 VAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAM---------KLPPITLLLLTSHSLNPTLLTLLAITStALGGWTGL 170
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRVLTLLFGADPALFLGTLLLVLGLLTM-LVGALGAL 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 171 NQTQIRKILAFSSISHLGWMTVII-IYNPK-LTLLTFYL--YCLMTTTIFFT----LNTTKTLKLSTMTTAWTKIPSLTA 242
Cdd:COG0651   292 AQRDLKRLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAA 371

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1917171638 243 TLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:COG0651   372 AFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ndhB CHL00049
NADH dehydrogenase subunit 2
 87-296 1.00e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 62.71  E-value: 1.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  87 TQLTYPTSCLL----LTVAISMKLGLAPFHFWFPEVLQGS-----------SLTTGLLLATAMKLPPITLLLLTSHSlnp 151
Cdd:CHL00049  205 TQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRIFDIPFYFSSNEWHL--- 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 152 tLLTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVIII-------YNPKLTLLTFYLYCLMTT---TIFFTLNt 221
Cdd:CHL00049  282 -LLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFMNLGTfacIVLFGLR- 359

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171638 222 TKTLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:CHL00049  360 TGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-310 2.04e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.74  E-value: 2.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  97 LLTVAISMKLGLAPFHFWFPEVLQG-SSLTTGLLLATAMK------LPPITLLLLTSHSLNPTLLTLLAITSTA---LGG 166
Cdd:PRK08375  207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyalIRIYFTVFGGDFRFALGLGWLLAVLALLsmlVGS 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 167 WTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLL--TFYL--YCLMTTTIFFTLN----TTKTLKLSTMTTAWTKIP 238
Cdd:PRK08375  287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMP 366

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171638 239 SLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVN 310
Cdd:PRK08375  367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSE 438
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
102-263 5.49e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.66  E-value: 5.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 102 ISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-------TLLTLLAITSTALGGWTGLNQTQ 174
Cdd:PRK02504  220 IAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTS 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 175 IRKILAFSSISHLGWMTVIIIYNPK--LTLLTFYL--YCLM-----TTTIFFTLNtTKTLKLSTMTTAWTKIPSLTATLM 245
Cdd:PRK02504  300 MKRMLAYSSIGQAGFVMIGLVAGTEagYASMVFYLlaYLFMnlgafACVILFSLR-TGTDQISDYAGLYQKDPLLTLGLS 378

                         170
                  ....*....|....*...
gi 1917171638 246 LTLLSLAGLPPFTGFLPK 263
Cdd:PRK02504  379 LCLLSLGGIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-313 7.82e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 44.32  E-value: 7.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  97 LLTVAISMKLGLAPFHFWFPEVLQG--SSLTTGLLLATA------MKLPPITLLLLTSHSLNPTLLTLLAITSTALGGWT 168
Cdd:PRK08376  225 LFIAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQaglyalARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAM 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 169 GLNQTQIRKILAFSSISHLGWMTV---IIIYNPKLTLLTFYLYCLMTTTIFFTLN-----------------TTKTLKLS 228
Cdd:PRK08376  305 AVVQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLN 384

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 229 TMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQelTKQEMTPTATIIALL-SLLGLFFYLRLAYcaTITLPPN 307
Cdd:PRK08376  385 ELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH--TAFFGPP 460


                  ....*.
gi 1917171638 308 SVNYMK 313
Cdd:PRK08376  461 SEKVMN 466
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 96-268 2.02e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  96 LLLTVAISMKLGLapfHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLLAIT-----STALGGWTGL 170
Cdd:MTH00032  232 LIGCIGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFFAATVGL 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 171 NQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYL--YCLMTTTIFFTLN------TTKTLKLSTMTTAWTKIPSLTA 242
Cdd:MTH00032  309 VQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYT 388

                         170       180
                  ....*....|....*....|....*.
gi 1917171638 243 TLMLTLLSLAGLPPFTGFLPKWLIIQ 268
Cdd:MTH00032  389 MMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 2.28e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  96 LLLTVAISmKLGLAPFHFWFPEVLQGSSLTTGLLLATAMK------LPPITLLLLTSHSLNPTLLTLlAITSTALGGWTG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVkagiylVARLAPGFADVPVWRPTVLVL-GLATMLLGGWRA 285

                          90       100
                  ....*....|....*....|....*
gi 1917171638 170 LNQTQIRKILAFSSISHLGWMTVII 194
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12650 PRK12650
DUF4040 family protein;
97-304 2.95e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.72  E-value: 2.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  97 LLTVAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATAM-KLPPITLLLLTSHSLNPTLLTLLAITS---TAL-GGWTGLN 171
Cdd:PRK12650  213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVvKAGIYLLLRFSPVFHDVAVWNWLLIIVgmiTALmGAVFAVQ 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 172 QTQIRKILAFSSISHLGWM-TVIIIYNP-KLT--LLTFYLYCLMTTTIFFTL----NTTKTLKLSTMTTAWTKIPSLTAT 243
Cdd:PRK12650  293 KTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVS 372

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1917171638 244 LMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMtPTATIIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650  373 VTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 151-298 4.35e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 4.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 151 PTLLTLLAI--TSTAL-GGWTGLNQTQIRKILAFSSISHLGWMTVIIiynpKLTLLTFYLYCLMTTTIFFTL-------- 219
Cdd:COG1009   272 PVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFKALlflgagsv 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 220 -NTTKTLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQE-LTKQEMTPTATIIALLSLLGLFFY-LRL 296
Cdd:COG1009   348 iHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLGAFLTAFYsFRL 427


                  ..
gi 1917171638 297 AY 298
Cdd:COG1009   428 FF 429
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 152-289 4.62e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.21  E-value: 4.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 152 TLLTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLY----CLMTTTIFFTLNT----TK 223
Cdd:PRK12647  260 TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTG 339

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1917171638 224 TLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTkqEMTPTATIIALLSLLG 289
Cdd:PRK12647  340 TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 96-298 6.68e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.52  E-value: 6.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  96 LLLTVAISMKLGLAPFHFWFPE-----------VLQGSSLTTG---LLLATAMKLPPITLLLLTSHSLNPTL---LTLLA 158
Cdd:PRK08668  200 LFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYVLPGTKLFSEFGTYRGVPLFnyiLAWLG 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 159 ITSTALGGWTGLNQTQIRKILAFSSISHLGWmtvIIIYNPKLTLLTF-------YLYCLMTTTIFFTLNT----TKTLKL 227
Cdd:PRK08668  280 NISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKI 356

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1917171638 228 STMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:PRK08668  357 SEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 2.77e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 39.33  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 152 TLLTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTLLTFYLY----CLMTTTIFFTLNTTK---- 223
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfg 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1917171638 224 TLKLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLII 267
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 94-295 3.69e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.97  E-value: 3.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638  94 SCLLLTVAISMKLGLAPFHFWFPEVLQG-----SSLTTGLLLATAMKLPPITLLLLTSHSLNPT---LLTLLAITSTALG 165
Cdd:PRK08676  208 SFLFIFIGFLAKSGLVPFHTWLPAAYAKapsvvSALLSGTVLNIGIYGILRLSALLRQSGAAEQfsnVLIGLGIFSIAVA 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 166 GWTGLNQTQIRKILAFSSISHLGWMTVIIIYNPKLTL--LTFYL--YCLMTTTIFFTLNTTKTLKLSTMTTAWTKI---- 237
Cdd:PRK08676  288 AFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSAGILHRQYRSDRFDRIFDVfrlq 367

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1917171638 238 PSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTPTATIIALLSLLG---LFFYLR 295
Cdd:PRK08676  368 PVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLK 428
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
152-298 8.57e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.01  E-value: 8.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171638 152 TLLTLLAITSTALGGWTGLNQTQIRKILAFSSISHLGWMTV-IIIYNPK-LTLLTFYLYCLMT--TTIFFTLNTTKTL-- 225
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtg 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171638 226 --KLSTMTTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQ-ELTKQEMTPTATIIA--LLSLLGLFFYLRLAY 298
Cdd:PRK12663  353 yrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLItsLITMYSLFRIFFLAY 430
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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