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Conserved domains on  [gi|1917171628|gb|QOL11842|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Grallaria rufula rufula]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 5.27e-153

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.48  E-value: 5.27e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*
gi 1917171628 321 VNTLTTTLMALTLVLLPLSPMTSTI 345
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTI 345
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 5.27e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.48  E-value: 5.27e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*
gi 1917171628 321 VNTLTTTLMALTLVLLPLSPMTSTI 345
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTI 345
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.02e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.90  E-value: 1.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  14 ALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLF-SSMTNAwFTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  92 PMS------------CLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPT 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 153 LLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTLnttktLKLS 228
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVI-----LLLS 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 229 TMMTAWTKI----------PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007   346 RKGGEAEEIedlaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.61e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.70  E-value: 4.61e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  23 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  91 HPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT------LLTLMAITSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 165 GGWTGLNQTQVRKILAFSSISHLGWMTIII----IYNPKLTLLTFYLYCLMTITIF-----FTLNTTKTLKLSTMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171628 236 KIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 1.58e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  15 LGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP- 92
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  93 -----------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPTLL 154
Cdd:TIGR01770 193 sngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 155 TLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTL------NTTKT 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171628 225 LKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 5.27e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.48  E-value: 5.27e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*
gi 1917171628 321 VNTLTTTLMALTLVLLPLSPMTSTI 345
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-320 9.49e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 361.81  E-value: 9.49e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSlNPTLLTLMAIT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-340 2.05e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 358.46  E-value: 2.05e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|
gi 1917171628 321 VNTLTTTLMALTLVLLPLSP 340
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 1.32e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 318.33  E-value: 1.32e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPnSVNYMKL-WQ-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKMkWQfEN 319

                         330       340
                  ....*....|....*....|....*..
gi 1917171628 319 KPVNTLTTTLMALTLVLLPLSPMTSTI 345
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 8.41e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.01  E-value: 8.41e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVNYMKLWQTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*
gi 1917171628 321 VNTLTTTLMALTLVLLPLSPMTSTI 345
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 10-322 8.80e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 244.84  E-value: 8.80e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  10 IMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQL 89
Cdd:MTH00041   10 ITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGP 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  90 THPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITSAALGGWTG 169
Cdd:MTH00041   90 LNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 170 LNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTATLMLALL 249
Cdd:MTH00041  170 LNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSIL 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1917171628 250 SLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITL-PPNSVNYMKlWQTNKPVN 322
Cdd:MTH00041  250 SLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLfPQHSISLFS-WRNSGNIT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-319 1.28e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 184.64  E-value: 1.28e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWF 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TGqwditqLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTShslNPTLLTLMAIT 160
Cdd:MTH00160   82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCAtITLPPNSVNYMKLWQTNK 319
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNK 310
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-302 2.84e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.06  E-value: 2.84e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   6 KLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWD 85
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  86 ITqlthpmscLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNP-TLLTLMAITSAAL 164
Cdd:MTH00144   86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 165 GGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNtTKTLKLSTMMTAWTKIPSLTATL 244
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSI 236

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171628 245 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATI 302
Cdd:MTH00144  237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-310 4.92e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.86  E-value: 4.92e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   1 MSPQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSsMTNAWF 80
Cdd:MTH00011    3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  81 TgqwdITQLTHPMScLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00011   82 F----PSLLKNITA-LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 161 SAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00011  157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 241 TATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYcATITLPPNSVN 310
Cdd:MTH00011  237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-298 2.30e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 139.04  E-value: 2.30e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  12 SLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMtnAWFTGQWditqlTH 91
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  92 PMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHslNPTLLTLMAITSAALGGWTGLN 171
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 172 QTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCLMTITIFFTLNTTKTLKLSTMMTAWTKIPSLTATLMLALLSL 251
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1917171628 252 AGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.02e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.90  E-value: 1.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  14 ALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLF-SSMTNAwFTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  92 PMS------------CLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPT 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 153 LLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTLnttktLKLS 228
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVI-----LLLS 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 229 TMMTAWTKI----------PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007   346 RKGGEAEEIedlaglarrsPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.45e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.42  E-value: 1.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  13 LALGTTITVSSNHWMMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLVQATASALLLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  79 WFTGQWDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNptLLTLMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 159 ITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII----IYNPKLTLLTFYLYCLMTITIF---FTLNTTKTLkLSTMM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171628 232 TAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.61e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.70  E-value: 4.61e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  23 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  91 HPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT------LLTLMAITSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 165 GGWTGLNQTQVRKILAFSSISHLGWMTIII----IYNPKLTLLTFYLYCLMTITIF-----FTLNTTKTLKLSTMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171628 236 KIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 4.43e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.51  E-value: 4.43e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  14 ALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  93 ------------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLP-------PITLLLLTSHSLNPTL 153
Cdd:PRK05777  193 ladgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafavllrLLVVAFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 154 LTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIF-FTLNTTKTLKLS 228
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgVISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171628 229 TMMTAWTKI----PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:PRK05777  353 ESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 1.58e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  15 LGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP- 92
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  93 -----------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPP-------ITLLLLTSHSLNPTLL 154
Cdd:TIGR01770 193 sngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 155 TLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTL--LTFYL--YCLMTITIFFTL------NTTKT 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171628 225 LKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-296 1.99e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 1.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  10 IMSLALGTTITVSSNHWMMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDI-- 86
Cdd:MTH00199  103 ILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqg 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  87 --TQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTlmAITSAAL 164
Cdd:MTH00199  183 inSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 165 GGWTGLNQTQVRKILAFSSISHLGW----MTIIIIYNPKLTLLTFYLYCLMTITIFF---TLNTTKTLkLSTMMTAWTKI 237
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSiilSLKLTKGL-IVEVSGLSRKN 339

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1917171628 238 PSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00199  340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 2.49e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.50  E-value: 2.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  13 LALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  93 MS----------CLLLTTAISMKLGLAPFHFWFPE-----------VLqgSSLTTGLLLATTMKLPPITLLLLTSHSLNP 151
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLL--SGLLTKVGVYAILRVLTLLFGADPALFLGT 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 152 TLLTLmAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII-IYNPK-LTLLTFYL--YCLMTITIFFT----LNTTK 223
Cdd:COG0651   274 LLLVL-GLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLAagaiERATG 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171628 224 TLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:COG0651   353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-302 1.42e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.59  E-value: 1.42e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628   3 PQTKLMSIMSLALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAI---------EAATKYFLVQATASALLLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  74 SMTNAWFTGQ--------------WDITQLTHPMSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 140 TLLLLTSHSLNptLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII-------IYNPKLTLLTFYLYCLMT 212
Cdd:MTH00198  347 ILLTSLVITSK--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALAS 424

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 213 ITIFFTL------------------NTTKTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQE 274
Cdd:MTH00198  425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1917171628 275 MTPTATIIALLSLLGL-------FFYLRLAycATI 302
Cdd:MTH00198  505 FSSSLSIYYLVALFAIictcisaFYYIRIV--ATI 537
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 1.31e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.41  E-value: 1.31e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  51 RAIEAATKYFLVQATASALLL--FSsmtnaWFTGQ-------WDI------TQLTHPMSCLL----LTTAISMKLGLAPF 111
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 112 HFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT-------LLTLMAITSAALGGWTGLNQTQVRKILAFSSI 184
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 185 SHLGWMTIIII-------YNPKLTLLTFYLycLMTI-----TIFFTLNtTKTLKLSTMMTAWTKIPSLTATLMLALLSLA 252
Cdd:CHL00049  314 GQIGYVIIGIIvgdsndgYASMITYMLFYI--FMNLgtfacIVLFGLR-TGTDNIRDYAGLYTKDPFLALSLALCLLSLG 390

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1917171628 253 GLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:CHL00049  391 GIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.48e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 58.91  E-value: 1.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  50 PRAIEAATKYFLVQATASALLLF-SSMTNAWFTGQWDITQLTHPM----------SCLLLTTAISMKLGLAPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitspslglalALVFVIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 119 LQGSSLTTGLLLATTMKLPPITLLLLTSHSLNP-------TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMT 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 192 IIIIYNPK--LTLLTFYL--YCLM-----TITIFFTLNTtKTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLP 262
Cdd:PRK02504  317 IGLVAGTEagYASMVFYLlaYLFMnlgafACVILFSLRT-GTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395


                  .
gi 1917171628 263 K 263
Cdd:PRK02504  396 K 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-310 5.07e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 5.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  33 LEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFS-SMTNAwFTGQWDITQLTH--PMSCLLLT------TAIS 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 104 MKLGLAPFHFWFPEVLQGSSLTTGLLLATT-------MKLPPITLLLLTSHSLNPTLLTLMAITSAA---LGGWTGLNQT 173
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLvtkvavyALIRIYFTVFGGDFRFALGLGWLLAVLALLsmlVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 174 QVRKILAFSSISHLGWMTIIIIYNPKLTLL--TFYL--YCLMTITIFFTLN----TTKTLKLSTMMTAWTKIPSLTATLM 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171628 246 LALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSVN 310
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSE 438
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-313 4.01e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.64  E-value: 4.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  33 LEINTLAILPLIS-KPHHPRAIEAATKYFLVQATASALLLFS---------SMTNAWFTGQWDITQLTHPMSCL-LLTTA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 102 ISMKLGLAPFHFW----FPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT----LLTLMAITSAALGGWTGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 174 QVRKILAFSSISHLGWMTI---IIIYNPKLTLLTFYLYCLMTITIFFTLN-----------------TTKTLKLSTMMTA 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLNELGGL 389

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 234 WTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIIALL-SLLGLFFYLRLAYcaTITLPPNSVNYM 312
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH--TAFFGPPSEKVM 465


                  .
gi 1917171628 313 K 313
Cdd:PRK08376  466 N 466
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 1.68e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.53  E-value: 1.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  34 EINTLAILPLISKPHHpRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTHPMS-----------CLLLTTAI 102
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfalivFLFLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 103 SMKLGLAPFHFWFPE-----------VLQGS-------SLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAITsAAL 164
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQlsklgayGFLLVLYVLPGTKLFSEFGTYRGVPLFNYILAWLGNIS-IIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 165 GGWTGLNQTQVRKILAFSSISHLGWmtiIIIYNPKLTLLTF-------YLYCLMTITIFFTLNT----TKTLKLSTMMTA 233
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMGGL 362

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171628 234 WTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:PRK08668  363 IEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 151-298 2.97e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.53  E-value: 2.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 151 PTLLTLMAITSAA---LGGWTGLNQTQVRKILAFSSISHLGWMTIIIiynpKLTLLTFYLYCLMTITIFftlnttktlKL 227
Cdd:COG1009   272 PVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFF---------KA 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 228 STMMTA------------------WTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQE-LTKQEMTPTATIIALL-SL 287
Cdd:COG1009   339 LLFLGAgsvihatgtrdirkmgglRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAF 418

                         170
                  ....*....|.
gi 1917171628 288 LGLFFYLRLAY 298
Cdd:COG1009   419 LTAFYSFRLFF 429
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 152-289 5.98e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.91  E-value: 5.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 152 TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLY----CLMTITIFFTLNT----TK 223
Cdd:PRK12647  260 TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTG 339

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1917171628 224 TLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTkqEMTPTATIIALLSLLG 289
Cdd:PRK12647  340 TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-271 1.78e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  92 PMSCLLLTTAI--SMKLGLapfHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPTLLTLMAIT-----SAAL 164
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 165 GGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYL--YCLMTITIFFTLN------TTKTLKLSTMMTAWTK 236
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1917171628 237 IPSLTATLMLALLSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.01e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 3.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  33 LEINTLAILPLISKPHHPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQWDITQLTH--PMSCLLLTTAISMKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 111 FHFWFPEVLQGS-SLTTGLLLATTMKLPPITLLLLTSHSLNPTL-LTLMAITSAALGGWTGLNQTQVRKILAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAePPVSALLSGVVVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 189 WmtiiIIYNPKLTLLTFYLYCLMTITIFFTLNT----TKTLKLSTMMTAWTKIPsltatLMLALLSLAGLPPLTGFLPKW 264
Cdd:PRK07234  283 F----ILAAPLVGGLYALAHGLVKSTLFLCAGAlpsrNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSKV 353


                  ....*..
gi 1917171628 265 LIIQELT 271
Cdd:PRK07234  354 LTLKNLL 360
PRK12650 PRK12650
DUF4040 family protein;
98-304 1.55e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  98 LTTAISMKLGLA--------PFHFWFPEVLQGSSLTTGLLLATTM-KLPPITLLLLTSHSLNPT----LLTLMAITSAAL 164
Cdd:PRK12650  206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVvKAGIYLLLRFSPVFHDVAvwnwLLIIVGMITALM 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 165 GGWTGLNQTQVRKILAFSSISHLGWM-TIIIIYNP-KLT--LLTFYLYCLMTITIFFTL----NTTKTLKLSTMMTAWTK 236
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171628 237 IPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMtPTATIIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650  366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 1.71e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  13 LALGTTITVSSNHWMMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLVQATA------SALLLFSSMTNAWFTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  87 TQLTHP----------MSCLLLTTAISMKLGLAPFHFWFPEVLQGSSLTTGLLLATTMKLPPITLLLLTSHSLNPT---- 152
Cdd:PRK08676  191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1917171628 153 ----LLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIII 194
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 151-284 2.65e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.52  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 151 PTLLTLMAITsAALGGWTGLNQTQVRKILAFSSISHLGWMTIII-IYNPKLTLLTFYLYC---LMTITIFFTL----NTT 222
Cdd:PRK12644  268 PTVLVLGLAT-MLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLahaLFKAALFLVVgiidHST 346

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1917171628 223 KTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIAL 284
Cdd:PRK12644  347 GTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVL 408
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
152-298 3.19e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.16  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 152 TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTI-IIIYNPK-LTLLTFYLYCLMTIT--IFFTLNTTKTL-- 225
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVVKtaLFLIAGSLVRLtg 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1917171628 226 --KLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLIIQ-ELTKQEMTPTATIIA--LLSLLGLFFYLRLAY 298
Cdd:PRK12663  353 yrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLItsLITMYSLFRIFFLAY 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 3.88e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.91  E-value: 3.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  49 HPRAIEAATKYFLVQATASALLLFSSMTNAWFTGQW--DITQLT-HPMS-------CLLLTTAISMKLGLAPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 119 L-QGSSLTTGLLLATTMKL-------PPITLLLLTSHSLNPTLLTLmAITSAALGGWTGLNQTQVRKILAFSSISHLGWM 190
Cdd:COG1008   236 HvEAPTAGSVLLAGVLLKMggygllrFALPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 1917171628 191 TI 192
Cdd:COG1008   315 LL 316
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 5.76e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 5.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 152 TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTIIIIYNPKLTLLTFYLYCL----------MTI-TIFFTLN 220
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsivksalfMVSgSISYHFG 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1917171628 221 TTKTLKLSTMmtaWTKIPSLTATLMLALLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  360 TTKLEDCLNL---WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-288 9.77e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 37.61  E-value: 9.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628  50 PRAIEAATKYFLVQATASALLLFSSMTNAWFTGQ-WDITQL-THPMSC-------LLLTTAISMKLGLAPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 121 GSSLTTGLLLATTMKLPPITLLLLTSHSLNP-------TLLTLMAITSAALGGWTGLNQTQVRKILAFSSISHLGWMTII 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171628 194 IIYNPKLTLL--TFYLYC--LMTITIFFTLNT----TKTLKLSTMMTAWTKIPSLTATLMLALLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNELGISgaVFQMIShgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391

                         250       260
                  ....*....|....*....|...
gi 1917171628 266 IIQELTKqeMTPTATIIALLSLL 288
Cdd:TIGR01972 392 ILLGSFK--VNPVVAFLAALGIV 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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