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Conserved domains on  [gi|1905001231|gb|QNS42507|]
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NADH-quinone oxidoreductase subunit NuoF [Chryseobacterium manosquense]

Protein Classification

NADH-quinone oxidoreductase subunit F( domain architecture ID 11449059)

NADH-quinone oxidoreductase subunit F (NuoF) is part of the dehydrogenase domain of the complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

PubMed:  23417064

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 1-428 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 715.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231   1 MSKKLLLKDAHVEGIRFFDVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGVPRYLVV 79
Cdd:COG1894     2 KQTRVLLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVC 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  80 NADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEI 159
Cdd:COG1894    82 NADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 160 YVHRGAGAYICGEETALLESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKL 239
Cdd:COG1894   162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 240 ISACGNINKPGVYEIDMTITVEEFIYsaEYCGGIPNGKKLKACIPGGSSVPIVPANLLlktingePRYMNYESLSdggfA 319
Cdd:COG1894   242 FSLSGHVKNPGLYEVPMGTTLRELIY--DIGGGIRGGRKLKAVQPGGPSGGCLPAEHL-------DTPMDYESLA----A 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 320 TGTMMGSGGFIVLDEDQCVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTI 399
Cdd:COG1894   309 AGSMLGSGGMIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSL 388

                         410       420
                  ....*....|....*....|....*....
gi 1905001231 400 CPLGDAAAWPVAAAIRHFRDEFEWHINNP 428
Cdd:COG1894   389 CALGDAAPNPVLSTLKYFRDEFEAHIKDK 417
 
Name Accession Description Interval E-value
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 1-428 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 715.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231   1 MSKKLLLKDAHVEGIRFFDVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGVPRYLVV 79
Cdd:COG1894     2 KQTRVLLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVC 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  80 NADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEI 159
Cdd:COG1894    82 NADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 160 YVHRGAGAYICGEETALLESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKL 239
Cdd:COG1894   162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 240 ISACGNINKPGVYEIDMTITVEEFIYsaEYCGGIPNGKKLKACIPGGSSVPIVPANLLlktingePRYMNYESLSdggfA 319
Cdd:COG1894   242 FSLSGHVKNPGLYEVPMGTTLRELIY--DIGGGIRGGRKLKAVQPGGPSGGCLPAEHL-------DTPMDYESLA----A 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 320 TGTMMGSGGFIVLDEDQCVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTI 399
Cdd:COG1894   309 AGSMLGSGGMIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSL 388

                         410       420
                  ....*....|....*....|....*....
gi 1905001231 400 CPLGDAAAWPVAAAIRHFRDEFEWHINNP 428
Cdd:COG1894   389 CALGDAAPNPVLSTLKYFRDEFEAHIKDK 417
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 19-425 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 594.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  19 DVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGV-PRYLVVNADESEPGTFKDRYLME 96
Cdd:TIGR01959  15 EEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPkPKYLVCNADESEPGTCKDRDLME 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  97 YIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETAL 176
Cdd:TIGR01959  95 FDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVHRGAGAYICGEETAL 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 177 LESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDM 256
Cdd:TIGR01959 175 LESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSVSGHVNKPGNYELPL 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 257 TITVEEFIysAEYCGGIPNGKKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQ 336
Cdd:TIGR01959 255 GTPLRELL--EDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAP------MDYDSLA----AAGSMLGTGAVIVMDEST 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 337 CVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRH 416
Cdd:TIGR01959 323 CMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKH 402


                  ....*....
gi 1905001231 417 FRDEFEWHI 425
Cdd:TIGR01959 403 FRDEFEAHI 411
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
22-427 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 520.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  22 RKQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK-PQGVPRYLVVNADESEPGTFKDRYLMEYIPH 100
Cdd:PRK13596   24 KKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKeSDGRPHYLVVNADESEPGTCKDRDILRHDPH 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 101 LLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESL 180
Cdd:PRK13596  104 KLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESL 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 181 EGKRGNPRLKPPFPAVKGLWESPTVVNNVETIaAVVPIINITGAE-YAKIGVGRSTGTKLISACGNINKPGVYEIDMTIT 259
Cdd:PRK13596  184 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESI-AVVPTILRRGAAwFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIP 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 260 VEEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQCV 338
Cdd:PRK13596  263 FRELI--EKHAGGVRGGwDNLLAVIPGGSSVPLIPAEQCEDAI------MDFDSLR----AVGSGLGTAAVIVMDKSTDI 330

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFR 418
Cdd:PRK13596  331 IKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFR 410


                  ....*....
gi 1905001231 419 DEFEWHINN 427
Cdd:PRK13596  411 PEIEERIDQ 419
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
45-215 1.54e-61

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 196.97  E-value: 1.54e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  45 VKTSGLRGRGGAGFPTGMKWSFlaKPQGVPRYLVVNADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRG 124
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSP--PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 125 EY-SWIpDILEQAIEEAKKAGFlgknilgtgydlEIYVHRGAGAYICGEETALLESLEGkRGNPRLKPpfPAVKGLwesp 203
Cdd:pfam01512  79 EKpEAI-AALEKAIAEARAAGF------------DIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV---- 138

                         170
                  ....*....|..
gi 1905001231 204 tVVNNVETIAAV 215
Cdd:pfam01512 139 -VVNNVETLAAV 149
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
339-384 3.41e-22

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 88.74  E-value: 3.41e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1905001231  339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADI 384
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
 
Name Accession Description Interval E-value
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 1-428 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 715.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231   1 MSKKLLLKDAHVEGIRFFDVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGVPRYLVV 79
Cdd:COG1894     2 KQTRVLLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVC 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  80 NADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEI 159
Cdd:COG1894    82 NADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 160 YVHRGAGAYICGEETALLESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKL 239
Cdd:COG1894   162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 240 ISACGNINKPGVYEIDMTITVEEFIYsaEYCGGIPNGKKLKACIPGGSSVPIVPANLLlktingePRYMNYESLSdggfA 319
Cdd:COG1894   242 FSLSGHVKNPGLYEVPMGTTLRELIY--DIGGGIRGGRKLKAVQPGGPSGGCLPAEHL-------DTPMDYESLA----A 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 320 TGTMMGSGGFIVLDEDQCVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTI 399
Cdd:COG1894   309 AGSMLGSGGMIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSL 388

                         410       420
                  ....*....|....*....|....*....
gi 1905001231 400 CPLGDAAAWPVAAAIRHFRDEFEWHINNP 428
Cdd:COG1894   389 CALGDAAPNPVLSTLKYFRDEFEAHIKDK 417
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 19-425 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 594.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  19 DVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGV-PRYLVVNADESEPGTFKDRYLME 96
Cdd:TIGR01959  15 EEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPkPKYLVCNADESEPGTCKDRDLME 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  97 YIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETAL 176
Cdd:TIGR01959  95 FDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVHRGAGAYICGEETAL 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 177 LESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDM 256
Cdd:TIGR01959 175 LESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSVSGHVNKPGNYELPL 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 257 TITVEEFIysAEYCGGIPNGKKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQ 336
Cdd:TIGR01959 255 GTPLRELL--EDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAP------MDYDSLA----AAGSMLGTGAVIVMDEST 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 337 CVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRH 416
Cdd:TIGR01959 323 CMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKH 402


                  ....*....
gi 1905001231 417 FRDEFEWHI 425
Cdd:TIGR01959 403 FRDEFEAHI 411
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
22-427 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 520.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  22 RKQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK-PQGVPRYLVVNADESEPGTFKDRYLMEYIPH 100
Cdd:PRK13596   24 KKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKeSDGRPHYLVVNADESEPGTCKDRDILRHDPH 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 101 LLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESL 180
Cdd:PRK13596  104 KLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESL 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 181 EGKRGNPRLKPPFPAVKGLWESPTVVNNVETIaAVVPIINITGAE-YAKIGVGRSTGTKLISACGNINKPGVYEIDMTIT 259
Cdd:PRK13596  184 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESI-AVVPTILRRGAAwFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIP 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 260 VEEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQCV 338
Cdd:PRK13596  263 FRELI--EKHAGGVRGGwDNLLAVIPGGSSVPLIPAEQCEDAI------MDFDSLR----AVGSGLGTAAVIVMDKSTDI 330

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFR 418
Cdd:PRK13596  331 IKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFR 410


                  ....*....
gi 1905001231 419 DEFEWHINN 427
Cdd:PRK13596  411 PEIEERIDQ 419
PTZ00304 PTZ00304
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
 23-430 6.24e-152

NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional


Pssm-ID: 185547 [Multi-domain]  Cd Length: 461  Bit Score: 439.60  E-value: 6.24e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  23 KQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK--PQGVPRYLVVNADESEPGTFKDRYLMEYIPH 100
Cdd:PTZ00304   45 KRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKvkPDGRPSYLVVNADESEPGTCKDREIMRHDPH 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 101 LLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESL 180
Cdd:PTZ00304  125 KLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESI 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 181 EGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMTITV 260
Cdd:PTZ00304  205 EGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPL 284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 261 EEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLlktingEPRYMNYESLSDggfaTGTMMGSGGFIVLDEDQCVV 339
Cdd:PTZ00304  285 RELI--ERHCGGVRGGwDNLLCVIPGGSSVPLIPKEIC------DNVLMDFDALKE----VQSGLGTAAVIVMDKSTDII 352

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 340 KHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRD 419
Cdd:PTZ00304  353 DAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGDAAAWPVQGLIRHFRP 432

                         410
                  ....*....|....*.
gi 1905001231 420 EFE-----WHINNPEA 430
Cdd:PTZ00304  433 EIEerierYWEANPHW 448
PLN03132 PLN03132
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
 23-428 7.85e-149

NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional


Pssm-ID: 178678 [Multi-domain]  Cd Length: 461  Bit Score: 431.60  E-value: 7.85e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  23 KQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK-PQGVPRYLVVNADESEPGTFKDRYLMEYIPHL 101
Cdd:PLN03132   56 KRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKvSDGRPSYLVVNADESEPGTCKDREIMRHDPHK 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 102 LIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESLE 181
Cdd:PLN03132  136 LLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLE 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 182 GKRGNPRLKPPFPAVKGLWESPTVVNNVETIaAVVPIINITGAE-YAKIGVGRSTGTKLISACGNINKPGVYEIDMTITV 260
Cdd:PLN03132  216 GKQGKPRLKPPFPANVGLYGCPTTVTNVETV-AVSPTILRRGPEwFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPL 294

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 261 EEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLlktingEPRYMNYESLSdggfATGTMMGSGGFIVLDEDQCVV 339
Cdd:PLN03132  295 KELI--ERHCGGVRGGwDNLLAIIPGGSSVPLLPKKIC------DDVLMDFDALK----AVQSGLGTAAVIVMDKSTDVV 362

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 340 KHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRD 419
Cdd:PLN03132  363 DAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRP 442


                  ....*....
gi 1905001231 420 EFEWHINNP 428
Cdd:PLN03132  443 ELERRIKER 451
PRK11278 PRK11278
NADH-quinone oxidoreductase subunit NuoF;
17-433 9.63e-137

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 236891 [Multi-domain]  Cd Length: 448  Bit Score: 400.33  E-value: 9.63e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  17 FFDVYRKQGGYEAAEKALK-MTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGVP-RYLVVNADESEPGTFKDRYL 94
Cdd:PRK11278   26 WLDEYRSKNGYEGARKALTgMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNiRYLLCNADEMEPGTYKDRLL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  95 MEYIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEET 174
Cdd:PRK11278  106 MEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEET 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 175 ALLESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRS--TGTKLISACGNINKPGVY 252
Cdd:PRK11278  186 ALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKSkdAGTKLMGFSGRVKNPGLW 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 253 EIDMTITVEEFIysAEYCGGIPNGKKLKACIPGGSSVP-IVPANLLLKtingepryMNYESLSDggfaTGTMMGSGGFIV 331
Cdd:PRK11278  266 ELPFGTTAREIL--EDYAGGMRDGLKFKAWQPGGAGTDfLTEAHLDLP--------MEFESIGK----AGSRLGTALAMA 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 332 LDEDQCVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKI-EGNTICPLGDAAAWPV 410
Cdd:PRK11278  332 VDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPL 411

                         410       420
                  ....*....|....*....|...
gi 1905001231 411 AAAIRHFRDEFEWHINNPEALTR 433
Cdd:PRK11278  412 QSAIKYFREEFEAGIKQPFSNTH 434
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
45-215 1.54e-61

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 196.97  E-value: 1.54e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  45 VKTSGLRGRGGAGFPTGMKWSFlaKPQGVPRYLVVNADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRG 124
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSP--PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 125 EY-SWIpDILEQAIEEAKKAGFlgknilgtgydlEIYVHRGAGAYICGEETALLESLEGkRGNPRLKPpfPAVKGLwesp 203
Cdd:pfam01512  79 EKpEAI-AALEKAIAEARAAGF------------DIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV---- 138

                         170
                  ....*....|..
gi 1905001231 204 tVVNNVETIAAV 215
Cdd:pfam01512 139 -VVNNVETLAAV 149
NADH_4Fe-4S pfam10589
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
345-424 2.54e-38

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 463160 [Multi-domain]  Cd Length: 85  Bit Score: 133.76  E-value: 2.54e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 345 LAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWH 424
Cdd:pfam10589   6 FLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRDEFEAH 85
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
339-384 3.41e-22

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 88.74  E-value: 3.41e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1905001231  339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADI 384
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 35-303 3.51e-12

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 67.75  E-value: 3.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  35 KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSflAKPQGVPRYLVVNADESEPGTFKDRYLMEYIPHLLIEGMIISSFALG 114
Cdd:TIGR01945 118 NLSPEEILEKIRAAGIVGLGGATFPTHVKLN--PPPEKKIETLIINGAECEPYLTCDDRLMRERAEEIIGGIRILLKILG 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 115 ANTSYIYIRgeyswipDILEQAIEEAKKAgflgknilGTGYDLEIYVHRgaGAYICGEETALLESLEGkRGNPRLKppFP 194
Cdd:TIGR01945 196 VKKVVIGIE-------DNKPEAIAALKKA--------LGGYNIKVRVLP--TKYPQGGEKQLIYALTG-REVPSGG--LP 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 195 AVKGLwesptVVNNVETIAAVvpiinitgaeYAKIGVGRSTGTKLISACGN-INKPGVYEIDMTITVEEFIysaEYCGGI 273
Cdd:TIGR01945 256 ADIGV-----VVQNVGTAFAI----------YEAVVNGKPLIERVVTVTGDaIRRPKNLWVLIGTPVSDIL---AFCGGF 317

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1905001231 274 PNgKKLKACIPG---GSSVPI--VPanlLLKTING 303
Cdd:TIGR01945 318 RE-KPERLIMGGpmmGLALPSldVP---VTKGTSG 348
RnfC COG4656
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ...
 35-143 5.43e-11

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443694 [Multi-domain]  Cd Length: 451  Bit Score: 64.39  E-value: 5.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  35 KMTPEEITEEVKTSGLRGRGGAGFPTGMKwsfLAKPQGVP-RYLVVNADESEPG-TFKDRYLMEYiPHLLIEGMIISSFA 112
Cdd:COG4656   118 DLSPEEIIERIREAGIVGLGGAGFPTHVK---LSPPPDKKiDTLIINGAECEPYlTCDDRLMRER-AEEIIEGIRILMKA 193

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1905001231 113 LGANTSYIYIRGEYswipdilEQAIEEAKKA 143
Cdd:COG4656   194 LGAKKVIIGIEDNK-------PEAIAALRKA 217
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 36-115 4.71e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 45.71  E-value: 4.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231  36 MTPEEITEEVKTSGLRGRGGAGFPTGMKwsfLAKPQGVPRYLVVNADESEPG-TFKDRYLMEYiPHLLIEGMIISSFALG 114
Cdd:PRK05035  125 LSPEELIERIRQAGIAGLGGAGFPTAVK---LQPGGDKIETLIINGAECEPYiTADDRLMRER-ADEIIEGIRILAHLLQ 200


                  .
gi 1905001231 115 A 115
Cdd:PRK05035  201 P 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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