|
Name |
Accession |
Description |
Interval |
E-value |
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
1-428 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 715.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 1 MSKKLLLKDAHVEGIRFFDVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGVPRYLVV 79
Cdd:COG1894 2 KQTRVLLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 80 NADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEI 159
Cdd:COG1894 82 NADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 160 YVHRGAGAYICGEETALLESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKL 239
Cdd:COG1894 162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 240 ISACGNINKPGVYEIDMTITVEEFIYsaEYCGGIPNGKKLKACIPGGSSVPIVPANLLlktingePRYMNYESLSdggfA 319
Cdd:COG1894 242 FSLSGHVKNPGLYEVPMGTTLRELIY--DIGGGIRGGRKLKAVQPGGPSGGCLPAEHL-------DTPMDYESLA----A 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 320 TGTMMGSGGFIVLDEDQCVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTI 399
Cdd:COG1894 309 AGSMLGSGGMIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSL 388
|
410 420
....*....|....*....|....*....
gi 1905001231 400 CPLGDAAAWPVAAAIRHFRDEFEWHINNP 428
Cdd:COG1894 389 CALGDAAPNPVLSTLKYFRDEFEAHIKDK 417
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
19-425 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 594.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 19 DVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGV-PRYLVVNADESEPGTFKDRYLME 96
Cdd:TIGR01959 15 EEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPkPKYLVCNADESEPGTCKDRDLME 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 97 YIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETAL 176
Cdd:TIGR01959 95 FDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVHRGAGAYICGEETAL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 177 LESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDM 256
Cdd:TIGR01959 175 LESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSVSGHVNKPGNYELPL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 257 TITVEEFIysAEYCGGIPNGKKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQ 336
Cdd:TIGR01959 255 GTPLRELL--EDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAP------MDYDSLA----AAGSMLGTGAVIVMDEST 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 337 CVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRH 416
Cdd:TIGR01959 323 CMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKH 402
|
....*....
gi 1905001231 417 FRDEFEWHI 425
Cdd:TIGR01959 403 FRDEFEAHI 411
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
22-427 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 520.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 22 RKQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK-PQGVPRYLVVNADESEPGTFKDRYLMEYIPH 100
Cdd:PRK13596 24 KKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKeSDGRPHYLVVNADESEPGTCKDRDILRHDPH 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 101 LLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESL 180
Cdd:PRK13596 104 KLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 181 EGKRGNPRLKPPFPAVKGLWESPTVVNNVETIaAVVPIINITGAE-YAKIGVGRSTGTKLISACGNINKPGVYEIDMTIT 259
Cdd:PRK13596 184 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESI-AVVPTILRRGAAwFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIP 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 260 VEEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQCV 338
Cdd:PRK13596 263 FRELI--EKHAGGVRGGwDNLLAVIPGGSSVPLIPAEQCEDAI------MDFDSLR----AVGSGLGTAAVIVMDKSTDI 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFR 418
Cdd:PRK13596 331 IKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFR 410
|
....*....
gi 1905001231 419 DEFEWHINN 427
Cdd:PRK13596 411 PEIEERIDQ 419
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
45-215 |
1.54e-61 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 196.97 E-value: 1.54e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 45 VKTSGLRGRGGAGFPTGMKWSFlaKPQGVPRYLVVNADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRG 124
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP--PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 125 EY-SWIpDILEQAIEEAKKAGFlgknilgtgydlEIYVHRGAGAYICGEETALLESLEGkRGNPRLKPpfPAVKGLwesp 203
Cdd:pfam01512 79 EKpEAI-AALEKAIAEARAAGF------------DIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV---- 138
|
170
....*....|..
gi 1905001231 204 tVVNNVETIAAV 215
Cdd:pfam01512 139 -VVNNVETLAAV 149
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
339-384 |
3.41e-22 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 88.74 E-value: 3.41e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1905001231 339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADI 384
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
1-428 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 715.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 1 MSKKLLLKDAHVEGIRFFDVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGVPRYLVV 79
Cdd:COG1894 2 KQTRVLLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 80 NADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEI 159
Cdd:COG1894 82 NADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 160 YVHRGAGAYICGEETALLESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKL 239
Cdd:COG1894 162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 240 ISACGNINKPGVYEIDMTITVEEFIYsaEYCGGIPNGKKLKACIPGGSSVPIVPANLLlktingePRYMNYESLSdggfA 319
Cdd:COG1894 242 FSLSGHVKNPGLYEVPMGTTLRELIY--DIGGGIRGGRKLKAVQPGGPSGGCLPAEHL-------DTPMDYESLA----A 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 320 TGTMMGSGGFIVLDEDQCVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTI 399
Cdd:COG1894 309 AGSMLGSGGMIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSL 388
|
410 420
....*....|....*....|....*....
gi 1905001231 400 CPLGDAAAWPVAAAIRHFRDEFEWHINNP 428
Cdd:COG1894 389 CALGDAAPNPVLSTLKYFRDEFEAHIKDK 417
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
19-425 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 594.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 19 DVYRKQGGYEAAEKAL-KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGV-PRYLVVNADESEPGTFKDRYLME 96
Cdd:TIGR01959 15 EEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPkPKYLVCNADESEPGTCKDRDLME 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 97 YIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETAL 176
Cdd:TIGR01959 95 FDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVHRGAGAYICGEETAL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 177 LESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDM 256
Cdd:TIGR01959 175 LESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSVSGHVNKPGNYELPL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 257 TITVEEFIysAEYCGGIPNGKKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQ 336
Cdd:TIGR01959 255 GTPLRELL--EDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAP------MDYDSLA----AAGSMLGTGAVIVMDEST 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 337 CVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRH 416
Cdd:TIGR01959 323 CMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKH 402
|
....*....
gi 1905001231 417 FRDEFEWHI 425
Cdd:TIGR01959 403 FRDEFEAHI 411
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
22-427 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 520.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 22 RKQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK-PQGVPRYLVVNADESEPGTFKDRYLMEYIPH 100
Cdd:PRK13596 24 KKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKeSDGRPHYLVVNADESEPGTCKDRDILRHDPH 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 101 LLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESL 180
Cdd:PRK13596 104 KLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 181 EGKRGNPRLKPPFPAVKGLWESPTVVNNVETIaAVVPIINITGAE-YAKIGVGRSTGTKLISACGNINKPGVYEIDMTIT 259
Cdd:PRK13596 184 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESI-AVVPTILRRGAAwFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIP 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 260 VEEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTIngepryMNYESLSdggfATGTMMGSGGFIVLDEDQCV 338
Cdd:PRK13596 263 FRELI--EKHAGGVRGGwDNLLAVIPGGSSVPLIPAEQCEDAI------MDFDSLR----AVGSGLGTAAVIVMDKSTDI 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFR 418
Cdd:PRK13596 331 IKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFR 410
|
....*....
gi 1905001231 419 DEFEWHINN 427
Cdd:PRK13596 411 PEIEERIDQ 419
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
23-430 |
6.24e-152 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 439.60 E-value: 6.24e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 23 KQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK--PQGVPRYLVVNADESEPGTFKDRYLMEYIPH 100
Cdd:PTZ00304 45 KRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKvkPDGRPSYLVVNADESEPGTCKDREIMRHDPH 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 101 LLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESL 180
Cdd:PTZ00304 125 KLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 181 EGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMTITV 260
Cdd:PTZ00304 205 EGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPL 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 261 EEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLlktingEPRYMNYESLSDggfaTGTMMGSGGFIVLDEDQCVV 339
Cdd:PTZ00304 285 RELI--ERHCGGVRGGwDNLLCVIPGGSSVPLIPKEIC------DNVLMDFDALKE----VQSGLGTAAVIVMDKSTDII 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 340 KHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRD 419
Cdd:PTZ00304 353 DAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGDAAAWPVQGLIRHFRP 432
|
410
....*....|....*.
gi 1905001231 420 EFE-----WHINNPEA 430
Cdd:PTZ00304 433 EIEerierYWEANPHW 448
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
23-428 |
7.85e-149 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 431.60 E-value: 7.85e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 23 KQGGYEAAEKALKMTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAK-PQGVPRYLVVNADESEPGTFKDRYLMEYIPHL 101
Cdd:PLN03132 56 KRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKvSDGRPSYLVVNADESEPGTCKDREIMRHDPHK 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 102 LIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESLE 181
Cdd:PLN03132 136 LLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLE 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 182 GKRGNPRLKPPFPAVKGLWESPTVVNNVETIaAVVPIINITGAE-YAKIGVGRSTGTKLISACGNINKPGVYEIDMTITV 260
Cdd:PLN03132 216 GKQGKPRLKPPFPANVGLYGCPTTVTNVETV-AVSPTILRRGPEwFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPL 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 261 EEFIysAEYCGGIPNG-KKLKACIPGGSSVPIVPANLLlktingEPRYMNYESLSdggfATGTMMGSGGFIVLDEDQCVV 339
Cdd:PLN03132 295 KELI--ERHCGGVRGGwDNLLAIIPGGSSVPLLPKKIC------DDVLMDFDALK----AVQSGLGTAAVIVMDKSTDVV 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 340 KHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRD 419
Cdd:PLN03132 363 DAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRP 442
|
....*....
gi 1905001231 420 EFEWHINNP 428
Cdd:PLN03132 443 ELERRIKER 451
|
|
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
17-433 |
9.63e-137 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 400.33 E-value: 9.63e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 17 FFDVYRKQGGYEAAEKALK-MTPEEITEEVKTSGLRGRGGAGFPTGMKWSFLAKPQGVP-RYLVVNADESEPGTFKDRYL 94
Cdd:PRK11278 26 WLDEYRSKNGYEGARKALTgMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNiRYLLCNADEMEPGTYKDRLL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 95 MEYIPHLLIEGMIISSFALGANTSYIYIRGEYSWIPDILEQAIEEAKKAGFLGKNILGTGYDLEIYVHRGAGAYICGEET 174
Cdd:PRK11278 106 MEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEET 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 175 ALLESLEGKRGNPRLKPPFPAVKGLWESPTVVNNVETIAAVVPIINITGAEYAKIGVGRS--TGTKLISACGNINKPGVY 252
Cdd:PRK11278 186 ALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKSkdAGTKLMGFSGRVKNPGLW 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 253 EIDMTITVEEFIysAEYCGGIPNGKKLKACIPGGSSVP-IVPANLLLKtingepryMNYESLSDggfaTGTMMGSGGFIV 331
Cdd:PRK11278 266 ELPFGTTAREIL--EDYAGGMRDGLKFKAWQPGGAGTDfLTEAHLDLP--------MEFESIGK----AGSRLGTALAMA 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 332 LDEDQCVVKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKI-EGNTICPLGDAAAWPV 410
Cdd:PRK11278 332 VDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPL 411
|
410 420
....*....|....*....|...
gi 1905001231 411 AAAIRHFRDEFEWHINNPEALTR 433
Cdd:PRK11278 412 QSAIKYFREEFEAGIKQPFSNTH 434
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
45-215 |
1.54e-61 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 196.97 E-value: 1.54e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 45 VKTSGLRGRGGAGFPTGMKWSFlaKPQGVPRYLVVNADESEPGTFKDRYLMEYIPHLLIEGMIISSFALGANTSYIYIRG 124
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP--PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 125 EY-SWIpDILEQAIEEAKKAGFlgknilgtgydlEIYVHRGAGAYICGEETALLESLEGkRGNPRLKPpfPAVKGLwesp 203
Cdd:pfam01512 79 EKpEAI-AALEKAIAEARAAGF------------DIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV---- 138
|
170
....*....|..
gi 1905001231 204 tVVNNVETIAAV 215
Cdd:pfam01512 139 -VVNNVETLAAV 149
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
345-424 |
2.54e-38 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 133.76 E-value: 2.54e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 345 LAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWH 424
Cdd:pfam10589 6 FLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRDEFEAH 85
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
339-384 |
3.41e-22 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 88.74 E-value: 3.41e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1905001231 339 VKHTLTLAHFYMHESCGQCTPCREGTGWMYRILKKIENGEGTMADI 384
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
35-303 |
3.51e-12 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 67.75 E-value: 3.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 35 KMTPEEITEEVKTSGLRGRGGAGFPTGMKWSflAKPQGVPRYLVVNADESEPGTFKDRYLMEYIPHLLIEGMIISSFALG 114
Cdd:TIGR01945 118 NLSPEEILEKIRAAGIVGLGGATFPTHVKLN--PPPEKKIETLIINGAECEPYLTCDDRLMRERAEEIIGGIRILLKILG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 115 ANTSYIYIRgeyswipDILEQAIEEAKKAgflgknilGTGYDLEIYVHRgaGAYICGEETALLESLEGkRGNPRLKppFP 194
Cdd:TIGR01945 196 VKKVVIGIE-------DNKPEAIAALKKA--------LGGYNIKVRVLP--TKYPQGGEKQLIYALTG-REVPSGG--LP 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 195 AVKGLwesptVVNNVETIAAVvpiinitgaeYAKIGVGRSTGTKLISACGN-INKPGVYEIDMTITVEEFIysaEYCGGI 273
Cdd:TIGR01945 256 ADIGV-----VVQNVGTAFAI----------YEAVVNGKPLIERVVTVTGDaIRRPKNLWVLIGTPVSDIL---AFCGGF 317
|
250 260 270
....*....|....*....|....*....|....*
gi 1905001231 274 PNgKKLKACIPG---GSSVPI--VPanlLLKTING 303
Cdd:TIGR01945 318 RE-KPERLIMGGpmmGLALPSldVP---VTKGTSG 348
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
35-143 |
5.43e-11 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 64.39 E-value: 5.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 35 KMTPEEITEEVKTSGLRGRGGAGFPTGMKwsfLAKPQGVP-RYLVVNADESEPG-TFKDRYLMEYiPHLLIEGMIISSFA 112
Cdd:COG4656 118 DLSPEEIIERIREAGIVGLGGAGFPTHVK---LSPPPDKKiDTLIINGAECEPYlTCDDRLMRER-AEEIIEGIRILMKA 193
|
90 100 110
....*....|....*....|....*....|.
gi 1905001231 113 LGANTSYIYIRGEYswipdilEQAIEEAKKA 143
Cdd:COG4656 194 LGAKKVIIGIEDNK-------PEAIAALRKA 217
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
36-115 |
4.71e-05 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 45.71 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1905001231 36 MTPEEITEEVKTSGLRGRGGAGFPTGMKwsfLAKPQGVPRYLVVNADESEPG-TFKDRYLMEYiPHLLIEGMIISSFALG 114
Cdd:PRK05035 125 LSPEELIERIRQAGIAGLGGAGFPTAVK---LQPGGDKIETLIINGAECEPYiTADDRLMRER-ADEIIEGIRILAHLLQ 200
|
.
gi 1905001231 115 A 115
Cdd:PRK05035 201 P 201
|
|
|