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Conserved domains on  [gi|1878849010|gb|QLP88688|]
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ribosomal protein S4, partial (chloroplast) [Pseudolophozia sp. Bakalin K-34-25-18]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11414071)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 4-205 1.25e-128

ribosomal protein S4; Reviewed


:

Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 360.30  E-value: 1.25e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   4 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYIDRSTSNKKvSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGST 83
Cdd:CHL00113    1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKK-SQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  84 GQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLFQKLK 163
Cdd:CHL00113   80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1878849010 164 IPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSRQV 205
Cdd:CHL00113  160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 4-205 1.25e-128

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 360.30  E-value: 1.25e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   4 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYIDRSTSNKKvSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGST 83
Cdd:CHL00113    1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKK-SQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  84 GQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLFQKLK 163
Cdd:CHL00113   80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1878849010 164 IPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSRQV 205
Cdd:CHL00113  160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 4-203 2.26e-84

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 248.07  E-value: 2.26e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   4 MSRYRGPRVKIIRRLG-ALPGLTSKtlkskSSYIDRS--------TSNKKVSQYRIRLEEKQKLRFHYGLTERQLLKYVR 74
Cdd:COG0522     1 MARYTGPKCKLCRREGvKLFLKGER-----KCALERRpyppgqhgQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  75 IARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQ 154
Cdd:COG0522    76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1878849010 155 NINLFQKLKIPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSR 203
Cdd:COG0522   156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 6-203 1.35e-73

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 221.02  E-value: 1.35e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   6 RYRGPRVKIIRRLGA-LPGLTSK-TLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGST 83
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVnLFGKSRKlLLKRKYPPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  84 GQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLFQKLK 163
Cdd:TIGR01017  81 GENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQRN 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1878849010 164 IPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSR 203
Cdd:TIGR01017 161 IPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 6-92 2.36e-21

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 84.14  E-value: 2.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   6 RYRGPRVKIIRRLGALPGLTSKTLKSKSSYIDRST---------SNKKVSQYRIRLEEKQKLRFHYGLTERQLLKYVRIA 76
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNRREypkypgqhgKIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 1878849010  77 RKAKGSTGQVLLQLLE 92
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-159 2.49e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 72.67  E-value: 2.49e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1878849010  93 MRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLF 159
Cdd:cd00165     1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYEDKKLL 67
S4 smart00363
S4 RNA-binding domain;
93-148 8.16e-12

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 57.99  E-value: 8.16e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1878849010   93 MRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKS 148
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 4-205 1.25e-128

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 360.30  E-value: 1.25e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   4 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYIDRSTSNKKvSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGST 83
Cdd:CHL00113    1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKK-SQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  84 GQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLFQKLK 163
Cdd:CHL00113   80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1878849010 164 IPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSRQV 205
Cdd:CHL00113  160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
rpsD PRK05327
30S ribosomal protein S4; Validated
 4-203 4.21e-88

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 257.73  E-value: 4.21e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   4 MSRYRGPRVKIIRRLG-ALPGLTSKTLKSKssYID----RSTSNKKVSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARK 78
Cdd:PRK05327    1 MARYTGPKCKLSRRLGvDLFKSGKRCLKRK--YPPgqhgQRRRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAAR 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  79 AKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINL 158
Cdd:PRK05327   79 RKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALEL 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1878849010 159 FQKLKIPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSR 203
Cdd:PRK05327  159 AERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 4-203 2.26e-84

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 248.07  E-value: 2.26e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   4 MSRYRGPRVKIIRRLG-ALPGLTSKtlkskSSYIDRS--------TSNKKVSQYRIRLEEKQKLRFHYGLTERQLLKYVR 74
Cdd:COG0522     1 MARYTGPKCKLCRREGvKLFLKGER-----KCALERRpyppgqhgQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  75 IARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQ 154
Cdd:COG0522    76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1878849010 155 NINLFQKLKIPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSR 203
Cdd:COG0522   156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 6-203 1.35e-73

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 221.02  E-value: 1.35e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   6 RYRGPRVKIIRRLGA-LPGLTSK-TLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGST 83
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVnLFGKSRKlLLKRKYPPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  84 GQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLFQKLK 163
Cdd:TIGR01017  81 GENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQRN 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1878849010 164 IPSHLTFELAQLRGSVNQTVNREWVNLKINELLVVEYYSR 203
Cdd:TIGR01017 161 IPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 6-92 2.36e-21

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 84.14  E-value: 2.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010   6 RYRGPRVKIIRRLGALPGLTSKTLKSKSSYIDRST---------SNKKVSQYRIRLEEKQKLRFHYGLTERQLLKYVRIA 76
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNRREypkypgqhgKIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 1878849010  77 RKAKGSTGQVLLQLLE 92
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-159 2.49e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 72.67  E-value: 2.49e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1878849010  93 MRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLF 159
Cdd:cd00165     1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYEDKKLL 67
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 93-140 7.64e-13

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 60.58  E-value: 7.64e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1878849010  93 MRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 140
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
93-148 8.16e-12

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 57.99  E-value: 8.16e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1878849010   93 MRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNKRKS 148
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
rps4p PRK04051
30S ribosomal protein S4P; Validated
 51-132 8.36e-09

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 52.95  E-value: 8.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  51 RLEEKQKLRFHYGL--------TERQLLKYVRIARKAKGSTGQV----------------LL---------------QLL 91
Cdd:PRK04051   22 RIAEERELLGKYGLrnkrelwkAQSILRKYRRQARSLLALPPEErakeeeqllgklkrygILkenatlddvlsltveDIL 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1878849010  92 EMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSY 132
Cdd:PRK04051  102 ERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSY 142
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 51-132 2.39e-08

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 51.27  E-value: 2.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  51 RLEEKQKLRFHYGL--------TERQLLKYVRIAR-------KAKGSTGQVLLQ-------------------------L 90
Cdd:TIGR01018  22 RLDRELKLMGKYGLrnkkevwkAETTLRKYRRAARelltlddEQRLFEGNQLLRrlvrlgildeenaklddvlgltvedF 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1878849010  91 LEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSY 132
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSY 143
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 89-133 8.94e-08

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 50.13  E-value: 8.94e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1878849010  89 QLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYN 133
Cdd:PLN00189  105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFM 149
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 53-132 3.30e-07

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 48.54  E-value: 3.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878849010  53 EEKQKLRFHYGLTERQLLkyvriarkakgstgqvllqllEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSY 132
Cdd:PTZ00155   88 EDERKLDYVLGLTVEKLL---------------------ERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSF 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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