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Conserved domains on  [gi|1860102241|gb|QKW32547|]
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transposase (plasmid) [Nocardiopsis flavescens]

Protein Classification

transposase( domain architecture ID 10595135)

transposase with a DUF4096 domain binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4096 pfam13340
Putative transposase of IS4/5 family (DUF4096);
2-57 1.98e-15

Putative transposase of IS4/5 family (DUF4096);


:

Pssm-ID: 433130  Cd Length: 76  Bit Score: 67.52  E-value: 1.98e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1860102241   2 PPPANTGGRLEKPARREVVDTILYVVRAGCSWHHLPTDLPPWQTLYWCFARWKEAG 57
Cdd:pfam13340  15 PPKRRGDGRPRKHDLREVLNAILYVLRTGCPWRDLPEDFGPWSTVYRRFRRWSRAG 70
 
Name Accession Description Interval E-value
DUF4096 pfam13340
Putative transposase of IS4/5 family (DUF4096);
2-57 1.98e-15

Putative transposase of IS4/5 family (DUF4096);


Pssm-ID: 433130  Cd Length: 76  Bit Score: 67.52  E-value: 1.98e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1860102241   2 PPPANTGGRLEKPARREVVDTILYVVRAGCSWHHLPTDLPPWQTLYWCFARWKEAG 57
Cdd:pfam13340  15 PPKRRGDGRPRKHDLREVLNAILYVLRTGCPWRDLPEDFGPWSTVYRRFRRWSRAG 70
COG3293 COG3293
Transposase [Mobilome: prophages, transposons];
3-57 2.33e-14

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442522 [Multi-domain]  Cd Length: 98  Bit Score: 65.38  E-value: 2.33e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1860102241   3 PPANTGGRLEKPaRREVVDTILYVVRAGCSWHHLPTDLPPWQTLYWCFARWKEAG 57
Cdd:COG3293    22 PGPDKGGRPRHD-DREVVNAILYVLRTGCPWRDLPRDFGPWRTVERRFRRWRRLG 75
transpos_IS5_3 NF033580
IS5 family transposase;
1-57 2.46e-12

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 63.36  E-value: 2.46e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1860102241   1 MPPPANTGGRLEKPARReVVDTILYVVRAGCSWHHLPTDLPPWQTLYWCFARWKEAG 57
Cdd:NF033580   17 LPPARRGGGRRRVDDRE-VLNAILYVLRTGCPWRDLPERFGPWSTVYRRFRRWSEAG 72
 
Name Accession Description Interval E-value
DUF4096 pfam13340
Putative transposase of IS4/5 family (DUF4096);
2-57 1.98e-15

Putative transposase of IS4/5 family (DUF4096);


Pssm-ID: 433130  Cd Length: 76  Bit Score: 67.52  E-value: 1.98e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1860102241   2 PPPANTGGRLEKPARREVVDTILYVVRAGCSWHHLPTDLPPWQTLYWCFARWKEAG 57
Cdd:pfam13340  15 PPKRRGDGRPRKHDLREVLNAILYVLRTGCPWRDLPEDFGPWSTVYRRFRRWSRAG 70
COG3293 COG3293
Transposase [Mobilome: prophages, transposons];
3-57 2.33e-14

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442522 [Multi-domain]  Cd Length: 98  Bit Score: 65.38  E-value: 2.33e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1860102241   3 PPANTGGRLEKPaRREVVDTILYVVRAGCSWHHLPTDLPPWQTLYWCFARWKEAG 57
Cdd:COG3293    22 PGPDKGGRPRHD-DREVVNAILYVLRTGCPWRDLPRDFGPWRTVERRFRRWRRLG 75
transpos_IS5_3 NF033580
IS5 family transposase;
1-57 2.46e-12

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 63.36  E-value: 2.46e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1860102241   1 MPPPANTGGRLEKPARReVVDTILYVVRAGCSWHHLPTDLPPWQTLYWCFARWKEAG 57
Cdd:NF033580   17 LPPARRGGGRRRVDDRE-VLNAILYVLRTGCPWRDLPERFGPWSTVYRRFRRWSEAG 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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