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Conserved domains on  [gi|1851188036|gb|QKK50977|]
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Ycf2 (chloroplast) [Tropidocarpum gracile]

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2285 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4135.34  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQDRFRKLLAPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDLKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  321 MWQFHQDLFVSWGKNPHESDFLRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  401 IDPFDSISNEDSEYHyhTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPE 480
Cdd:CHL00206   401 RDHFDSISNEDSEYH--TLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPE 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  481 ESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPIS 560
Cdd:CHL00206   479 EIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  561 SDLGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 640
Cdd:CHL00206   559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  641 SIDSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDP--KRVVFASNNIMEAVNQ 718
Cdd:CHL00206   639 SIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  719 YRLIRNLIQIQfqYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHFSNLKKSQKKWFDPLI 798
Cdd:CHL00206   719 YRLIRNLIQIQ--YSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLI 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  799 FLSRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 878
Cdd:CHL00206   797 FISRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 876

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  879 FLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLING 958
Cdd:CHL00206   877 FLSKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLING 956

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  959 GTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFY 1038
Cdd:CHL00206   957 GTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1039 CNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKQAFLERDTISPssIESQVSNIFISNDFLQSGDERYNL 1118
Cdd:CHL00206  1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSGDETYNL 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1119 YKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYL 1198
Cdd:CHL00206  1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1199 ---QRKKRSLCLKKCVDKGQMDKTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSI 1275
Cdd:CHL00206  1195 pseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSI 1274

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1276 FHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEKIHRNNESSLISTHLRSPNVREVLYSILFLLLVAG 1353
Cdd:CHL00206  1275 FHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILFLLLVAG 1354

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1354 YIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLW 1433
Cdd:CHL00206  1355 YLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSGGNMLL 1434

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1434 GGDPAYGVKSIRSKKKDLKINFIDIIDLIsiiPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWIDDKIESWVAN 1513
Cdd:CHL00206  1435 GGGPAYGVKSIRSKKKYLNINLIDIIDLI---PNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVAN 1511

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1514 SDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERR 1593
Cdd:CHL00206  1512 SDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERR 1591

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1594 IFLAHYQTITYSQTSCGANSFNFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKP 1673
Cdd:CHL00206  1592 IFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKP 1671

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1674 KGFFIDDIDIDDSDDIDASNDIDRELDTELelLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIVWIPNIHDLDVNES 1753
Cdd:CHL00206  1672 KGFLIDDIDIDDSDDIDDSDDIDRDLDTEL--LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES 1749

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1754 NYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMF 1833
Cdd:CHL00206  1750 NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMF 1829

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1834 HTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLIS 1913
Cdd:CHL00206  1830 HTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLS 1909

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1914 NCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPGPDEKNRITSYGFIENDSDLV 1993
Cdd:CHL00206  1910 NCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1989

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1994 HGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLDEKYESEFEEGEGEGVLDPQQIEE 2073
Cdd:CHL00206  1990 HGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEGALDPQQIEE 2069

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 2074 DLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSKEQGFFR 2153
Cdd:CHL00206  2070 DLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFR 2149

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 2154 ISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQRQRWLRTNSS 2233
Cdd:CHL00206  2150 ISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSS 2229

                         2250      2260      2270      2280      2290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1851188036 2234 LSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFPDEMKIGFM 2285
Cdd:CHL00206  2230 LSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2285 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4135.34  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQDRFRKLLAPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDLKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  321 MWQFHQDLFVSWGKNPHESDFLRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  401 IDPFDSISNEDSEYHyhTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPE 480
Cdd:CHL00206   401 RDHFDSISNEDSEYH--TLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPE 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  481 ESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPIS 560
Cdd:CHL00206   479 EIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  561 SDLGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 640
Cdd:CHL00206   559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  641 SIDSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDP--KRVVFASNNIMEAVNQ 718
Cdd:CHL00206   639 SIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  719 YRLIRNLIQIQfqYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHFSNLKKSQKKWFDPLI 798
Cdd:CHL00206   719 YRLIRNLIQIQ--YSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLI 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  799 FLSRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 878
Cdd:CHL00206   797 FISRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 876

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  879 FLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLING 958
Cdd:CHL00206   877 FLSKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLING 956

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  959 GTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFY 1038
Cdd:CHL00206   957 GTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1039 CNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKQAFLERDTISPssIESQVSNIFISNDFLQSGDERYNL 1118
Cdd:CHL00206  1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSGDETYNL 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1119 YKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYL 1198
Cdd:CHL00206  1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1199 ---QRKKRSLCLKKCVDKGQMDKTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSI 1275
Cdd:CHL00206  1195 pseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSI 1274

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1276 FHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEKIHRNNESSLISTHLRSPNVREVLYSILFLLLVAG 1353
Cdd:CHL00206  1275 FHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILFLLLVAG 1354

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1354 YIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLW 1433
Cdd:CHL00206  1355 YLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSGGNMLL 1434

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1434 GGDPAYGVKSIRSKKKDLKINFIDIIDLIsiiPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWIDDKIESWVAN 1513
Cdd:CHL00206  1435 GGGPAYGVKSIRSKKKYLNINLIDIIDLI---PNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVAN 1511

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1514 SDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERR 1593
Cdd:CHL00206  1512 SDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERR 1591

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1594 IFLAHYQTITYSQTSCGANSFNFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKP 1673
Cdd:CHL00206  1592 IFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKP 1671

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1674 KGFFIDDIDIDDSDDIDASNDIDRELDTELelLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIVWIPNIHDLDVNES 1753
Cdd:CHL00206  1672 KGFLIDDIDIDDSDDIDDSDDIDRDLDTEL--LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES 1749

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1754 NYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMF 1833
Cdd:CHL00206  1750 NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMF 1829

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1834 HTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLIS 1913
Cdd:CHL00206  1830 HTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLS 1909

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1914 NCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPGPDEKNRITSYGFIENDSDLV 1993
Cdd:CHL00206  1910 NCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1989

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1994 HGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLDEKYESEFEEGEGEGVLDPQQIEE 2073
Cdd:CHL00206  1990 HGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEGALDPQQIEE 2069

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 2074 DLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSKEQGFFR 2153
Cdd:CHL00206  2070 DLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFR 2149

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 2154 ISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQRQRWLRTNSS 2233
Cdd:CHL00206  2150 ISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSS 2229

                         2250      2260      2270      2280      2290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1851188036 2234 LSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFPDEMKIGFM 2285
Cdd:CHL00206  2230 LSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1485 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2744.52  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQDRFRKLLAPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDLKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  321 MWQFHQDLFVSWGKNPHESDFLRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  401 IDPFDSISNEDSEyhYHTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPE 480
Cdd:pfam05695  401 RDHFDSISNEDSK--YHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPE 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  481 ESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPIS 560
Cdd:pfam05695  479 EIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  561 SDLGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 640
Cdd:pfam05695  559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  641 SIDSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLED--PKRVVFASNNIMEAVNQ 718
Cdd:pfam05695  639 SIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDpkPKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  719 YRLIRNLIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHFSNLKKSQKKWFDPLI 798
Cdd:pfam05695  719 YRLIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLI 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  799 FLSRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 878
Cdd:pfam05695  797 FISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLL 876

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  879 FLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLING 958
Cdd:pfam05695  877 FLSKFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLING 956

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  959 GTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFY 1038
Cdd:pfam05695  957 GTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1039 CNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKQAFLERDTISPssIESQVSNIFISNDFLQSGDERYNL 1118
Cdd:pfam05695 1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSGDETYNL 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1119 YKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYL 1198
Cdd:pfam05695 1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1199 ---QRKKRSLCLKKCVDKGQMDKTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSI 1275
Cdd:pfam05695 1195 pseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSI 1274

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1276 FHDIMHGLDISWRILQKKLCLPQRNLISEISSKSLHNLLLSEEKIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYI 1355
Cdd:pfam05695 1275 FHDIMHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLLLVAGYL 1354

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1356 VRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--SGGNMLW 1433
Cdd:pfam05695 1355 VRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGsaSGGNMLL 1434

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1851188036 1434 GGDPAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTS 1485
Cdd:pfam05695 1435 GGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1621-1805 4.55e-78

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 255.38  E-value: 4.55e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1621 KPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIddsddidasndidreld 1700
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1701 telelltmmnaltmDMMSEIDRFYITLQFELAKAMSPCIVWIPNIHDLDVN-------ESNYLALGLLVNSLSRDCERCS 1773
Cdd:cd19505     64 --------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSS 129

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1851188036 1774 TRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1805
Cdd:cd19505    130 TRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1626-1880 6.05e-08

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 56.94  E-value: 6.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1626 RLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITV----FLNKFLDNKPKgffiddididdsddidasndIDRELdt 1701
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYIGEGAR--------------------NVREV-- 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1702 elelltmmnaltmdmmseidrfyitlqFELAKAMSPCIVWIPNI--------HDLDVNESNYLalgllVNSL-------- 1765
Cdd:COG1222    164 ---------------------------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfe 211

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1766 SRDcercstrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFHLEKKMFhtngFESI 1841
Cdd:COG1222    212 SRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD----LDKL 274

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1851188036 1842 ---TMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1880
Cdd:COG1222    275 aklTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2285 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4135.34  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQDRFRKLLAPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDLKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  321 MWQFHQDLFVSWGKNPHESDFLRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  401 IDPFDSISNEDSEYHyhTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPE 480
Cdd:CHL00206   401 RDHFDSISNEDSEYH--TLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPE 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  481 ESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPIS 560
Cdd:CHL00206   479 EIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  561 SDLGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 640
Cdd:CHL00206   559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  641 SIDSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLEDP--KRVVFASNNIMEAVNQ 718
Cdd:CHL00206   639 SIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  719 YRLIRNLIQIQfqYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHFSNLKKSQKKWFDPLI 798
Cdd:CHL00206   719 YRLIRNLIQIQ--YSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLI 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  799 FLSRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 878
Cdd:CHL00206   797 FISRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 876

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  879 FLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLING 958
Cdd:CHL00206   877 FLSKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLING 956

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  959 GTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFY 1038
Cdd:CHL00206   957 GTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1039 CNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKQAFLERDTISPssIESQVSNIFISNDFLQSGDERYNL 1118
Cdd:CHL00206  1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSGDETYNL 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1119 YKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYL 1198
Cdd:CHL00206  1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1199 ---QRKKRSLCLKKCVDKGQMDKTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSI 1275
Cdd:CHL00206  1195 pseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSI 1274

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1276 FHDIMHGLDISWRILQKKL--CLPQRNLISEISSKSLHNLLLSEEKIHRNNESSLISTHLRSPNVREVLYSILFLLLVAG 1353
Cdd:CHL00206  1275 FHDIMHGSDISWRILQKKLglKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILFLLLVAG 1354

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1354 YIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLW 1433
Cdd:CHL00206  1355 YLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSGGNMLL 1434

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1434 GGDPAYGVKSIRSKKKDLKINFIDIIDLIsiiPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVSGDWIDDKIESWVAN 1513
Cdd:CHL00206  1435 GGGPAYGVKSIRSKKKYLNINLIDIIDLI---PNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVAN 1511

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1514 SDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERR 1593
Cdd:CHL00206  1512 SDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERR 1591

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1594 IFLAHYQTITYSQTSCGANSFNFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKP 1673
Cdd:CHL00206  1592 IFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKP 1671

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1674 KGFFIDDIDIDDSDDIDASNDIDRELDTELelLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIVWIPNIHDLDVNES 1753
Cdd:CHL00206  1672 KGFLIDDIDIDDSDDIDDSDDIDRDLDTEL--LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES 1749

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1754 NYLALGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMF 1833
Cdd:CHL00206  1750 NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMF 1829

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1834 HTNGFESITMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLIS 1913
Cdd:CHL00206  1830 HTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLS 1909

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1914 NCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAGSVAQDLWSLPGPDEKNRITSYGFIENDSDLV 1993
Cdd:CHL00206  1910 NCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1989

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1994 HGLLEVQGALVGSSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLDEKYESEFEEGEGEGVLDPQQIEE 2073
Cdd:CHL00206  1990 HGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEGESEGALDPQQIEE 2069

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 2074 DLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYLAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDRSSKEQGFFR 2153
Cdd:CHL00206  2070 DLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFR 2149

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 2154 ISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIQRQRWLRTNSS 2233
Cdd:CHL00206  2150 ISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSS 2229

                         2250      2260      2270      2280      2290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1851188036 2234 LSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRWLFPDEMKIGFM 2285
Cdd:CHL00206  2230 LSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1485 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2744.52  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQDRFRKLLAPRIFSILLLRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036   81 VLFVVAALLYRINNRNMVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSSNINRLIVSLLYLTKGKKISESCFRDLKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  161 WVLPITKKCIMPESNWSSRWWRNWIGKKRDFCCKISNETVAGIDISFKEKDIKYLEFLFVYYMDDPIRKGHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  241 PSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  321 MWQFHQDLFVSWGKNPHESDFLRKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQF 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  401 IDPFDSISNEDSEyhYHTLINQREIQQLKERSILWDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPE 480
Cdd:pfam05695  401 RDHFDSISNEDSK--YHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPE 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  481 ESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEQDVSFVPSRRSENKEIVNIFKIITYLQNTVSIHPIS 560
Cdd:pfam05695  479 EIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  561 SDLGCDMVPKDELDMDSSNKISFLNKNPFFDLFHLFHERKRGGYTLRHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 640
Cdd:pfam05695  559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  641 SIDSYGLDQRQFLKEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKNWVRISCGNYLED--PKRVVFASNNIMEAVNQ 718
Cdd:pfam05695  639 SIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDpkPKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  719 YRLIRNLIQIqfQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHFSNLKKSQKKWFDPLI 798
Cdd:pfam05695  719 YRLIRNLIQI--QYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLI 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  799 FLSRTERSINRDPNAYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDRLCINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 878
Cdd:pfam05695  797 FISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLL 876

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  879 FLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHNTSQKSKFLING 958
Cdd:pfam05695  877 FLSKFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLING 956

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036  959 GTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFY 1038
Cdd:pfam05695  957 GTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1039 CNKRFPFYVEKARLNNSDFTYGQFLTILFIHNKIFSSCGGKKKQAFLERDTISPssIESQVSNIFISNDFLQSGDERYNL 1118
Cdd:pfam05695 1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISP--IESQVSNIFIPNDFPQSGDETYNL 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1119 YKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYL 1198
Cdd:pfam05695 1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1199 ---QRKKRSLCLKKCVDKGQMDKTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSI 1275
Cdd:pfam05695 1195 pseKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSI 1274

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1276 FHDIMHGLDISWRILQKKLCLPQRNLISEISSKSLHNLLLSEEKIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYI 1355
Cdd:pfam05695 1275 FHDIMHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLLLVAGYL 1354

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1356 VRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--SGGNMLW 1433
Cdd:pfam05695 1355 VRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGsaSGGNMLL 1434

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1851188036 1434 GGDPAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTS 1485
Cdd:pfam05695 1435 GGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1621-1805 4.55e-78

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 255.38  E-value: 4.55e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1621 KPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIddsddidasndidreld 1700
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDG----------------- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1701 telelltmmnaltmDMMSEIDRFYITLQFELAKAMSPCIVWIPNIHDLDVN-------ESNYLALGLLVNSLSRDCERCS 1773
Cdd:cd19505     64 --------------MLILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLLLNYLSRDFEKSS 129

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1851188036 1774 TRNILVIASTHIPQKVDPALIAPNKLNTCIKI 1805
Cdd:cd19505    130 TRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1622-1805 2.13e-10

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 61.14  E-value: 2.13e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1622 PFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVflnkfldnkpKGFfiddididdsddidasndidreldt 1701
Cdd:cd19481     16 SRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVV----------KLS------------------------- 60

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1702 elELLTMMNALTMDMMSEIdrfyitlqFELAKAMSPCIVWIPNIHDL-----DVNESNYL--ALGLLVNSLSRDCERcst 1774
Cdd:cd19481     61 --SLLSKYVGESEKNLRKI--------FERARRLAPCILFIDEIDAIgrkrdSSGESGELrrVLNQLLTELDGVNSR--- 127

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1851188036 1775 RNILVIASTHIPQKVDPALIAPNKLNTCIKI 1805
Cdd:cd19481    128 SKVLVIAATNRPDLLDPALLRPGRFDEVIEF 158
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1635-1794 5.89e-08

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 53.37  E-value: 5.89e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1635 ILVIGSIGTGRSYLVKYLATNSYVPFITV----FLNKFLDNKPKGFfiddididdsddidasndidRELdtelelltmmn 1710
Cdd:pfam00004    1 LLLYGPPGTGKTTLAKAVAKELGAPFIEIsgseLVSKYVGESEKRL--------------------REL----------- 49

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1711 altmdmmseidrfyitlqFELAKAMSPCIVWIPNIHDL--DVNESNYLALGLLVNSL--SRDCERCSTRNILVIASTHIP 1786
Cdd:pfam00004   50 ------------------FEAAKKLAPCVIFIDEIDALagSRGSGGDSESRRVVNQLltELDGFTSSNSKVIVIAATNRP 111


                   ....*...
gi 1851188036 1787 QKVDPALI 1794
Cdd:pfam00004  112 DKLDPALL 119
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1626-1880 6.05e-08

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 56.94  E-value: 6.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1626 RLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITV----FLNKFLDNKPKgffiddididdsddidasndIDRELdt 1701
Cdd:COG1222    106 KYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgseLVSKYIGEGAR--------------------NVREV-- 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1702 elelltmmnaltmdmmseidrfyitlqFELAKAMSPCIVWIPNI--------HDLDVNESNYLalgllVNSL-------- 1765
Cdd:COG1222    164 ---------------------------FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfe 211

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1766 SRDcercstrNILVIASTHIPQKVDPALIAPNKLNtcikiRRLLIP----QQRKHFFTLsYTRGFHLEKKMFhtngFESI 1841
Cdd:COG1222    212 SRG-------DVLIIAATNRPDLLDPALLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD----LDKL 274

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1851188036 1842 ---TMGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1880
Cdd:COG1222    275 aklTEGFSGADLKAIVTEAGMFAIREGRDTVTMEDLEKAIEK 316
RecA-like_CDC48_r2-like cd19511
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ...
 1619-1803 4.28e-05

second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410919 [Multi-domain]  Cd Length: 159  Bit Score: 46.12  E-value: 4.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1619 HGKPFSlRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVflnkfldnkpKGffiddididdsddidasndidre 1698
Cdd:cd19511     15 HPDAFK-RLGIRPPKGVLLYGPPGCGKTLLAKALASEAGLNFISV----------KG----------------------- 60

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1851188036 1699 ldteLELLTMMNALTMDMMSEIdrfyitlqFELAKAMSPCIVWIPNIHDLDVNESNYLALGL---LVNSLSRDCERCST- 1774
Cdd:cd19511     61 ----PELFSKYVGESERAVREI--------FQKARQAAPCIIFFDEIDSLAPRRGQSDSSGVtdrVVSQLLTELDGIESl 128

                          170       180
                   ....*....|....*....|....*....
gi 1851188036 1775 RNILVIASTHIPQKVDPALIAPNKLNTCI 1803
Cdd:cd19511    129 KGVVVIAATNRPDMIDPALLRPGRLDKLI 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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