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Conserved domains on  [gi|1840209204|gb|QJR84131|]
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cytochrome b, partial (mitochondrion) [Hipposideros ater]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 2-349 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 702.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00100   32 NFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00100  112 TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00100  192 LAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00100  272 WYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIG 351

                         330       340
                  ....*....|....*....|....*...
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLKW 349
Cdd:MTH00100  352 QLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 2-349 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 702.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00100   32 NFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00100  112 TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00100  192 LAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00100  272 WYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIG 351

                         330       340
                  ....*....|....*....|....*...
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLKW 349
Cdd:MTH00100  352 QLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-325 5.62e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 369.50  E-value: 5.62e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:COG1290    41 WFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPR 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 --TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALH-FLLPFI 158
Cdd:COG1290   121 elNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPAL 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 159 ITALVMVHLLFLHETGSNNPTGI----PSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDllGDPDNYTPANPLNT 234
Cdd:COG1290   201 LLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLAT 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 235 PPHIKPEWYFLFAYAILRSIP--NKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQP 312
Cdd:COG1290   279 PAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358

                         330
                  ....*....|...
gi 1840209204 313 VehPFILIGQLAS 325
Cdd:COG1290   359 P--IATLLGSINT 369
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-176 6.53e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 257.68  E-value: 6.53e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSY--TY 79
Cdd:cd00284    24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPR 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  80 TETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFII 159
Cdd:cd00284   104 ELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFII 183

                         170
                  ....*....|....*..
gi 1840209204 160 TALVMVHLLFLHETGSN 176
Cdd:cd00284   184 AVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-174 9.80e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 239.21  E-value: 9.80e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYT- 80
Cdd:pfam00033  15 NFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPr 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  81 -ETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFII 159
Cdd:pfam00033  95 eLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFIL 174

                         170
                  ....*....|....*
gi 1840209204 160 TALVMVHLLFLHETG 174
Cdd:pfam00033 175 AILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 206-309 2.36e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 206 IMILLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSM 285
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 1840209204 286 TF-RPISQCLFwlLVADLLTLtWIG 309
Cdd:TIGR01156 123 PFrRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 2-349 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 702.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00100   32 NFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00100  112 TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00100  192 LAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00100  272 WYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIG 351

                         330       340
                  ....*....|....*....|....*...
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLKW 349
Cdd:MTH00100  352 QLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 2-349 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 630.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00119   33 NFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKE 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00119  113 TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00119  193 LTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPE 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00119  273 WYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIG 352

                         330       340
                  ....*....|....*....|....*...
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLKW 349
Cdd:MTH00119  353 QLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 2-349 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 612.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00131   32 NFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00131  112 TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00131  192 ATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPE 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00131  272 WYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIG 351

                         330       340
                  ....*....|....*....|....*...
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLKW 349
Cdd:MTH00131  352 QVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 2-349 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 599.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00074   33 NFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKE 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00074  113 TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00074  193 ASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPE 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00074  273 WYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIG 352

                         330       340
                  ....*....|....*....|....*...
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLKW 349
Cdd:MTH00074  353 QAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00156
cytochrome b; Provisional
 2-323 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 585.98  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00156   22 NFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKH 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00156  102 TWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILA 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00156  182 MVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPE 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00156  262 WYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTG 341


                  ..
gi 1840209204 322 QL 323
Cdd:MTH00156  342 QI 343
CYTB MTH00191
cytochrome b; Provisional
 2-325 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 584.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00191   29 NFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKE 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00191  109 TWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAA 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00191  189 LSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPE 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00191  269 WYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLG 348


                  ....
gi 1840209204 322 QLAS 325
Cdd:MTH00191  349 QISS 352
CYTB MTH00145
cytochrome b; Provisional
 2-325 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 556.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00145   33 NFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQH 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00145  113 TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00145  193 LSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPE 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00145  273 WYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIG 352


                  ....
gi 1840209204 322 QLAS 325
Cdd:MTH00145  353 QVFT 356
CYTB MTH00034
cytochrome b; Validated
 2-325 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 543.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00034   32 NFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00034  112 TWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00034  192 LSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPE 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00034  272 WYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLG 351


                  ....
gi 1840209204 322 QLAS 325
Cdd:MTH00034  352 QVAS 355
CYTB MTH00016
cytochrome b; Validated
 2-322 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 531.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00016   33 NFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLME 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00016  113 TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAA 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00016  193 LSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPE 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00016  273 WYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLG 352


                  .
gi 1840209204 322 Q 322
Cdd:MTH00016  353 Q 353
CYTB MTH00053
cytochrome b; Provisional
 2-348 2.66e-171

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 481.51  E-value: 2.66e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00053   33 NFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKII 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00053  113 VWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00053  193 LALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPE 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00053  273 WYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIG 352

                         330       340
                  ....*....|....*....|....*..
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLK 348
Cdd:MTH00053  353 QIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 2-348 3.14e-170

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 478.81  E-value: 3.14e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00022   31 NFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFH 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00022  111 VWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAF 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00022  191 LVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPE 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00022  271 WYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIG 350

                         330       340
                  ....*....|....*....|....*..
gi 1840209204 322 QLASILYFLIILILLPLASITENHLLK 348
Cdd:MTH00022  351 QLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 2-323 1.59e-160

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 453.99  E-value: 1.59e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00224   33 NYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSE 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00224  113 TWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00224  193 ATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPE 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00224  273 WYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIG 352


                  ..
gi 1840209204 322 QL 323
Cdd:MTH00224  353 QV 354
CYTB MTH00033
cytochrome b; Provisional
 2-325 6.12e-128

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 371.58  E-value: 6.12e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00033   29 NFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVL 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00033  109 TWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVG 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLsLVLFSP---DLLGDPDNYTPANPLNTPPHI 238
Cdd:MTH00033  189 LVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFV-IIGIEPrieTLLQDPENFIQANPLVTPVHI 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 239 KPEWYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPV-EHPF 317
Cdd:MTH00033  268 QPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPY 347


                  ....*...
gi 1840209204 318 ILIGQLAS 325
Cdd:MTH00033  348 VLIGRIAT 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-325 5.62e-127

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 369.50  E-value: 5.62e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:COG1290    41 WFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPR 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 --TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALH-FLLPFI 158
Cdd:COG1290   121 elNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPAL 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 159 ITALVMVHLLFLHETGSNNPTGI----PSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDllGDPDNYTPANPLNT 234
Cdd:COG1290   201 LLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLAT 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 235 PPHIKPEWYFLFAYAILRSIP--NKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQP 312
Cdd:COG1290   279 PAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358

                         330
                  ....*....|...
gi 1840209204 313 VehPFILIGQLAS 325
Cdd:COG1290   359 P--IATLLGSINT 369
CYTB MTH00086
cytochrome b; Provisional
 2-325 2.09e-115

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 338.45  E-value: 2.09e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE 81
Cdd:MTH00086   21 NFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKK 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITA 161
Cdd:MTH00086  101 VWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLV 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 162 LVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLIlMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 241
Cdd:MTH00086  181 LVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPE 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 242 WYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSkqrSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIG 321
Cdd:MTH00086  260 WYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLS 336


                  ....
gi 1840209204 322 QLAS 325
Cdd:MTH00086  337 QIFS 340
CYTB MTH00046
cytochrome b; Validated
 4-325 1.59e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 277.63  E-value: 1.59e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   4 GSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTETW 83
Cdd:MTH00046   25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  84 NIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFIITALV 163
Cdd:MTH00046  105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 164 MVHLLFLHETGSNNPTGIPSD-ADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 242
Cdd:MTH00046  185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 243 YFLFAYAILRSIPNKLGGVIaLVLSILILAAIPllhtSKQRSMTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIGQ 322
Cdd:MTH00046  265 YFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339


                  ...
gi 1840209204 323 LAS 325
Cdd:MTH00046  340 LFS 342
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-176 6.53e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 257.68  E-value: 6.53e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSY--TY 79
Cdd:cd00284    24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPR 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  80 TETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFII 159
Cdd:cd00284   104 ELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFII 183

                         170
                  ....*....|....*..
gi 1840209204 160 TALVMVHLLFLHETGSN 176
Cdd:cd00284   184 AVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-174 9.80e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 239.21  E-value: 9.80e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   2 NFGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYT- 80
Cdd:pfam00033  15 NFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPr 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  81 -ETWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALHFLLPFII 159
Cdd:pfam00033  95 eLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFIL 174

                         170
                  ....*....|....*
gi 1840209204 160 TALVMVHLLFLHETG 174
Cdd:pfam00033 175 AILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 177-324 8.45e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 181.30  E-value: 8.45e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 177 NPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 256
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1840209204 257 KLGGVIALVLSILILAAIPLLHTSKQRSmTFRPISQCLFWLLVADLLTLTWIGGQPVEHPFILIGQLA 324
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
228-325 9.83e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 156.48  E-value: 9.83e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 228 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSMTFRPISQCLFWLLVADLLTLTW 307
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90
                  ....*....|....*...
gi 1840209204 308 IGGQPVEHPFILIGQLAS 325
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIAT 98
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
58-223 2.63e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.40  E-value: 2.63e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  58 SMFFICLFLHVGRGIYYGSYTYTE--TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVW 135
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 136 GGFSVDKATLTRFFALHF-LLPFIITALVMVHLLFLHETGSNNPTGIPSDADMIPFHPYYTIKDILGLILMIMILLSLVL 214
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1840209204 215 FSPDLLGDP 223
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 3-178 2.02e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 141.77  E-value: 2.02e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   3 FGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE- 81
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 -TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALH-FLLPFII 159
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1840209204 160 TALVMVHLLFLHETGSNNP 178
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 3-178 1.48e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 120.60  E-value: 1.48e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204   3 FGSLLGVCLMVQILTGLFLAMHYTSDTATAFHSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE- 81
Cdd:CHL00070   36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204  82 -TWNIGILLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMNLVEWVWGGFSVDKATLTRFFALH-FLLPFII 159
Cdd:CHL00070  116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                         170
                  ....*....|....*....
gi 1840209204 160 TALVMVHLLFLHETGSNNP 178
Cdd:CHL00070  196 AVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 199-309 4.27e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.58  E-value: 4.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 199 ILGLILMImilLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLH 278
Cdd:COG5679    45 ILGTIALC---IGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1840209204 279 TSKQRSMTF-RPISQCLFwlLVADLLTLtWIG 309
Cdd:COG5679   117 NVNKFQNPFrRPVATAVF--LFGTLVTL-WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 199-295 1.08e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 59.63  E-value: 1.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 199 ILGlilMIMILLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLL- 277
Cdd:CHL00058   44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                          90
                  ....*....|....*...
gi 1840209204 278 HTSKQRSMTFRPISQCLF 295
Cdd:CHL00058  116 NVNKFQNPFRRPVATTVF 133
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 206-309 2.36e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1840209204 206 IMILLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILILAAIPLLHTSKQRSM 285
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 1840209204 286 TF-RPISQCLFwlLVADLLTLtWIG 309
Cdd:TIGR01156 123 PFrRPVATTVF--LFGTVVAL-WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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