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Conserved domains on  [gi|1829649272|gb|QIW94321|]
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cytochrome b, partial (mitochondrion) [Otomys simiensis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 680.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00100  328 LVADLLTLT 336
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 680.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00100  328 LVADLLTLT 336
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-329 4.31e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 363.73  E-value: 4.31e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   2 PLFKIINHsFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  82 MFFICLFLHVGRGMYYGSYTF---LeTWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 158
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 159 GGFSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDILGVFIMIVLLM 233
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 234 TLVLFFPDalGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALLPFLHTSKQRNLTFR 311
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                         330
                  ....*....|....*...
gi 1829649272 312 PISQALYWILVANLLILT 329
Cdd:COG1290   335 PVRTALGVAFIVFFIVLT 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 1.40e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 286.57  E-value: 1.40e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   2 PLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  82 MFFICLFLHVGRGMYYGSY--TFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1829649272 160 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 9.04e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.86  E-value: 9.04e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  11 FIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  91 VGRGMYYG--SYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1829649272 169 TRFFAFHFILPFIITALVIVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-320 5.51e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.42  E-value: 5.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 222 ILGVFIMIVLLMTLVlffPDALGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLH 301
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100
                  ....*....|....*....|
gi 1829649272 302 T-SKQRNLTFRPISQALYWI 320
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVFLF 135
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 680.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00100  328 LVADLLTLT 336
CYTB MTH00119
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 613.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00119  169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00119  249 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00119  329 LVANLLILT 337
CYTB MTH00131
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 605.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00131  328 LVADVLILT 336
CYTB MTH00074
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 593.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00074    9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00074   89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00074  169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00074  249 NLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00074  329 LVANTLILT 337
CYTB MTH00191
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 584.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00191    5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00191   85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00191  165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00191  245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00191  325 WVANFILLT 333
CYTB MTH00156
cytochrome b; Provisional
 4-329 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 578.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   4 FKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMF 83
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  84 FICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 163
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 164 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFPDAL 243
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 244 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWILVA 323
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320


                  ....*.
gi 1829649272 324 NLLILT 329
Cdd:MTH00156  321 IVILLT 326
CYTB MTH00145
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 551.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00145    9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00145   89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00145  169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00145  249 NLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWI 328


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00145  329 FVGNFFILT 337
CYTB MTH00034
cytochrome b; Validated
 1-329 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 535.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00034    8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00034   88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00034  168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00034  248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWL 327


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00034  328 LIATFFILT 336
CYTB MTH00016
cytochrome b; Validated
 1-329 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 527.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00016    9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00016   89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00016  169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00016  249 NILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00016  329 LVSNFLLLT 337
CYTB MTH00224
cytochrome b; Provisional
 1-329 8.26e-164

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 461.70  E-value: 8.26e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00224    9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00224   89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00224  169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00224  249 NLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWL 328


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00224  329 LVTSWAILT 337
CYTB MTH00022
cytochrome b; Validated
 1-329 4.80e-163

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 459.55  E-value: 4.80e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   1 HPLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGA 80
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFP 240
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 241 DALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWI 320
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326


                  ....*....
gi 1829649272 321 LVANLLILT 329
Cdd:MTH00022  327 LIVDFILLT 335
CYTB MTH00053
cytochrome b; Provisional
 2-329 2.42e-160

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 452.62  E-value: 2.42e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   2 PLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  82 MFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 161
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 162 SVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFPD 241
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 242 ALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWIL 321
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329


                  ....*...
gi 1829649272 322 VANLLILT 329
Cdd:MTH00053  330 VGDFFLLT 337
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-329 4.31e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 363.73  E-value: 4.31e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   2 PLFKIINHsFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  82 MFFICLFLHVGRGMYYGSYTF---LeTWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 158
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 159 GGFSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDILGVFIMIVLLM 233
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 234 TLVLFFPDalGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALLPFLHTSKQRNLTFR 311
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                         330
                  ....*....|....*...
gi 1829649272 312 PISQALYWILVANLLILT 329
Cdd:COG1290   335 PVRTALGVAFIVFFIVLT 352
CYTB MTH00033
cytochrome b; Provisional
 12-329 2.21e-124

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 361.56  E-value: 2.21e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  12 IDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 91
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  92 GRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 171
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 172 FAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVL--FFPDALGDPDNY 249
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 250 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWILVANLLILT 329
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335
CYTB MTH00086
cytochrome b; Provisional
 5-284 6.38e-110

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 323.82  E-value: 6.38e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   5 KIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFF 84
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  85 ICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 164
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 165 KATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVfIMIVLLMTLVLFFPDALG 244
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLG 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1829649272 245 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 284
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGV 279
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 1.40e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 286.57  E-value: 1.40e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   2 PLFKIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  82 MFFICLFLHVGRGMYYGSY--TFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1829649272 160 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 9.04e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.86  E-value: 9.04e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  11 FIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  91 VGRGMYYG--SYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1829649272 169 TRFFAFHFILPFIITALVIVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 5-283 6.19e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.92  E-value: 6.19e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272   5 KIINHSFIDLPAPSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFF 84
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  85 ICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 164
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 165 KATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGL-NSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFPDAL 243
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1829649272 244 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 283
Cdd:MTH00046  243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-246 8.89e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 158.56  E-value: 8.89e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  81 SMFFICLFLHVGRGMYYGSYTFLE--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 159 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVL 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1829649272 238 FFPDALGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-329 9.20e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 147.41  E-value: 9.20e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 200 NPTGLNSDADKIPFHPYYTIKDILGVFIMIVLLMTLVLFFPDALGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 279
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1829649272 280 KLGGVLALILSILILALLPFLHTSKQRNlTFRPISQALYWILVANLLILT 329
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLG 129
PRK03735 PRK03735
cytochrome b6; Provisional
 26-201 5.55e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 142.54  E-value: 5.55e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  26 FGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLE- 104
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 105 -TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 182
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1829649272 183 TALVIVHLLFLHETGSNNP 201
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 17-201 1.22e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 128.30  E-value: 1.22e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  17 PSNISSWWNFGSLLGTCLMLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMY 96
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272  97 YGSYTFLE--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 174
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1829649272 175 H-FILPFIITALVIVHLLFLHETGSNNP 201
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
251-329 9.68e-28

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 104.10  E-value: 9.68e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1829649272 251 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLHTSKQRNLTFRPISQALYWILVANLLILT 329
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLG 79
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 222-318 2.88e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.27  E-value: 2.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 222 ILGVFIM--IVLLMTLVLFFPDALGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPF 299
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100
                  ....*....|....*....|
gi 1829649272 300 LHT-SKQRNLTFRPISQALY 318
Cdd:COG5679   115 IENvNKFQNPFRRPVATAVF 134
petD CHL00058
cytochrome b6/f complex subunit IV
 222-320 3.32e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.09  E-value: 3.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 222 ILGVFIMIVLLMTLVlffPDALGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFL- 300
Cdd:CHL00058   44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                          90       100
                  ....*....|....*....|
gi 1829649272 301 HTSKQRNLTFRPISQALYWI 320
Cdd:CHL00058  116 NVNKFQNPFRRPVATTVFLI 135
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-320 5.51e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.42  E-value: 5.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829649272 222 ILGVFIMIVLLMTLVlffPDALGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFLH 301
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100
                  ....*....|....*....|
gi 1829649272 302 T-SKQRNLTFRPISQALYWI 320
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVFLF 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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