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Conserved domains on  [gi|1829629007|gb|QIW76798|]
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flagellin A [Campylobacter jejuni]

Protein Classification

PRK08411 family protein( domain architecture ID 11483296)

PRK08411 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08411 PRK08411
flagellin; Reviewed
 1-573 0e+00

flagellin; Reviewed


:

Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 890.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 161 IGATQSSKIGLTRFETGGRITSGGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADKTGVRATFTVETRG 240
Cdd:PRK08411  161 IGATQSSKIGVTRFETGARITTSGVVQLTIKNYNGIDDFKFQNVVISTSVGTGLGALAEEINKNADKTGVRATFDVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 241 MAAVRAGTTSDDFAINGVKIGKVDYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK08411  241 VAAIKAGTTSDDFAINGVTIGKVEYKDGDGNGALVAAINSVKDTTGVEASIDENGKLVLTSRDGRGIKIDGDIGGGSGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 321 ANMKENYGRLSLVKNDGKDILVSGTGLSFAGFGANSFISQASVSLRESKGRFDANIADAMGFGSVNKGVVIGGFSTVSAY 400
Cdd:PRK08411  321 ANMKENYGRLSLVKNDGKDILISGTNLSFAGMGATDMISQASVSLRESKGQIDANVADAMGFNSYKGGVMIQGFSSVSAF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 401 MSSEGSGFSAGSGYSIGSGKGYSATLTGNATfISTASAASRVYNVSSGSGFSTGSNLSQFATMKTSVLGVKDETAGVTTL 480
Cdd:PRK08411  401 MSSEGSGFSQGSGYSVGSGKNYSVGLSSGIQ-ISSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTL 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 481 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 560
Cdd:PRK08411  480 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 559

                         570
                  ....*....|...
gi 1829629007 561 ANSVQQNVLRLLQ 573
Cdd:PRK08411  560 ANAVQQNVLRLLQ 572
 
Name Accession Description Interval E-value
PRK08411 PRK08411
flagellin; Reviewed
 1-573 0e+00

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 890.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 161 IGATQSSKIGLTRFETGGRITSGGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADKTGVRATFTVETRG 240
Cdd:PRK08411  161 IGATQSSKIGVTRFETGARITTSGVVQLTIKNYNGIDDFKFQNVVISTSVGTGLGALAEEINKNADKTGVRATFDVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 241 MAAVRAGTTSDDFAINGVKIGKVDYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK08411  241 VAAIKAGTTSDDFAINGVTIGKVEYKDGDGNGALVAAINSVKDTTGVEASIDENGKLVLTSRDGRGIKIDGDIGGGSGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 321 ANMKENYGRLSLVKNDGKDILVSGTGLSFAGFGANSFISQASVSLRESKGRFDANIADAMGFGSVNKGVVIGGFSTVSAY 400
Cdd:PRK08411  321 ANMKENYGRLSLVKNDGKDILISGTNLSFAGMGATDMISQASVSLRESKGQIDANVADAMGFNSYKGGVMIQGFSSVSAF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 401 MSSEGSGFSAGSGYSIGSGKGYSATLTGNATfISTASAASRVYNVSSGSGFSTGSNLSQFATMKTSVLGVKDETAGVTTL 480
Cdd:PRK08411  401 MSSEGSGFSQGSGYSVGSGKNYSVGLSSGIQ-ISSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTL 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 481 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 560
Cdd:PRK08411  480 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 559

                         570
                  ....*....|...
gi 1829629007 561 ANSVQQNVLRLLQ 573
Cdd:PRK08411  560 ANAVQQNVLRLLQ 572
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-142 6.32e-40

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 142.10  E-value: 6.32e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829629007  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNF 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-164 4.49e-32

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 123.82  E-value: 4.49e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:COG1344     2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFIN-QEFQIGASSNQTVKATIG 162
Cdd:COG1344    82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDtPPFQVDYQGDAGQRTAAL 161


                  ..
gi 1829629007 163 AT 164
Cdd:COG1344   162 GA 163
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-141 1.88e-13

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 71.23  E-value: 1.88e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGT 138
 
Name Accession Description Interval E-value
PRK08411 PRK08411
flagellin; Reviewed
 1-573 0e+00

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 890.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 161 IGATQSSKIGLTRFETGGRITSGGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADKTGVRATFTVETRG 240
Cdd:PRK08411  161 IGATQSSKIGVTRFETGARITTSGVVQLTIKNYNGIDDFKFQNVVISTSVGTGLGALAEEINKNADKTGVRATFDVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 241 MAAVRAGTTSDDFAINGVKIGKVDYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK08411  241 VAAIKAGTTSDDFAINGVTIGKVEYKDGDGNGALVAAINSVKDTTGVEASIDENGKLVLTSRDGRGIKIDGDIGGGSGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 321 ANMKENYGRLSLVKNDGKDILVSGTGLSFAGFGANSFISQASVSLRESKGRFDANIADAMGFGSVNKGVVIGGFSTVSAY 400
Cdd:PRK08411  321 ANMKENYGRLSLVKNDGKDILISGTNLSFAGMGATDMISQASVSLRESKGQIDANVADAMGFNSYKGGVMIQGFSSVSAF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 401 MSSEGSGFSAGSGYSIGSGKGYSATLTGNATfISTASAASRVYNVSSGSGFSTGSNLSQFATMKTSVLGVKDETAGVTTL 480
Cdd:PRK08411  401 MSSEGSGFSQGSGYSVGSGKNYSVGLSSGIQ-ISSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTL 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 481 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 560
Cdd:PRK08411  480 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 559

                         570
                  ....*....|...
gi 1829629007 561 ANSVQQNVLRLLQ 573
Cdd:PRK08411  560 ANAVQQNVLRLLQ 572
PRK13589 PRK13589
flagellin A;
1-573 0e+00

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 880.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK13589    1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT 160
Cdd:PRK13589   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 161 IGATQSSKIGLTRFETGGRITSGGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADKTGVRATFTVETRG 240
Cdd:PRK13589  161 IGATQSSKIGVTRFETGGRSFTSGEVQLTIKNYNGIDDFKFQKVVISTSVGTGLGALAEEINKSADKTGVRATFTVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 241 MAAVRAGTTSDDFAINGVKIGKVDYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK13589  241 VAAIKAGTTSQDFAINGVTIGQVAYKDGDGNGALVSAINSVKDTTGVEASKDANGQLVLTSRDGRGIKIDGNIGGGAGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 321 ANMKENYGRLSLVKNDGKDILVSGTGLSFAGFGANSFISQASVSLRESKGRFDANIADAMGFGSVNKG---VVIGGFSTV 397
Cdd:PRK13589  321 ANMKENYGRLSLVKNDGKDILISGTNLSAIGMGATDMISQASVSLRESKGRIDANIADAMGFNSYKGGgkfVVTGGFSSV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 398 SAYMSSEGSGFSAGSGYSIGSGKGYSATLTGNATFISTASAASRVYNVSSGSGFSTGSNLSQFATMKTSVLGVKDETAGV 477
Cdd:PRK13589  401 SAFMSSEGSGFSRGSGYSVGSGKNYSVGLSQGIQIISSASAMSTVYNVSAGSGFSSGSGLSQFATMKTTAAGVKDETAGV 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 478 TTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYA 557
Cdd:PRK13589  481 TTLKGAMAVMDIAETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYA 560

                         570
                  ....*....|....*.
gi 1829629007 558 MAQANSVQQNVLRLLQ 573
Cdd:PRK13589  561 MSQANAVQQNVLKLLQ 576
PRK13588 PRK13588
flagellin B; Provisional
 1-573 0e+00

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 556.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK13588    1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT 160
Cdd:PRK13588   81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKAS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 161 IGATQSSKIGLTRFETG----------GRITSGGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADKTGV 230
Cdd:PRK13588  161 IGATSSDKIGHVRMETSsfsgegmlasAAAQNLTEVGLNFKQVDGVNDYKIETVRISTSAGTGIGALSEIINRFSDTLGV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 231 RATFTVETRGMAAVRAGTTSdDFAINGVKIGKV-DYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKI 309
Cdd:PRK13588  241 RASYNVMATGGTPVQSGTVR-ELTINGVEIGTVnDVHKNDADGRLINAINSVKDRTGVEASLDIQGRINLTSIDGRAISV 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 310 D-----GNIGGGAFINANMKENY---GRLSLVKNDGKDILVSGTGLSFAGFGANSFISQASVSLRESKGRFDANIADAMG 381
Cdd:PRK13588  320 HaasasGQVFGGGNFAGISGTQHavvGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAG 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 382 FgsvnkgvviggfstvsaymssegsgfsagsgysigsgkgysatltgnatfistasaasrvynvssgsgfstgsnlsqFA 461
Cdd:PRK13588  400 A-----------------------------------------------------------------------------NA 402

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 462 TMKTSVLGVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAES 541
Cdd:PRK13588  403 NGAQAETNSQGIGAGVTSLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEES 482

                         570       580       590
                  ....*....|....*....|....*....|..
gi 1829629007 542 ANYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK13588  483 ANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514
PRK12584 PRK12584
flagellin A; Reviewed
 1-573 0e+00

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 531.02  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK12584    1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT 160
Cdd:PRK12584   81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKAS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 161 IGATQSSKIGLTRFETGGRITSGGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADKTGVRATFTVETRG 240
Cdd:PRK12584  161 IGSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSDRTGVKAYASVITTS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 241 MAAVRAGTTSDdFAINGVKIGKV-DYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGN------- 312
Cdd:PRK12584  241 DVAVQSGSLSN-LTLNGIHIGNIaDIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSIDGRGIEIKTDsvsngps 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 313 ----IGGGAFINANMkENYGRLSLVKNDGKDILVSGT------GLSFAGFGaNSFISQASVSLRESKGRFDANIADAMGf 382
Cdd:PRK12584  320 altmVNGGQDLTKGS-TNYGRLSLTRLDARDINVVSAsdsqhlGFSAIGFG-ESQVAETTVNLRDVTGNFNANVKSASG- 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 383 gsVNKGVVIggfstvsaymssegsgfsAGSGYSIGsgkgysatltgnatfistasaasrvynvssgsgfstgsnlsqfat 462
Cdd:PRK12584  397 --ANYNAVI------------------ASGNQSLG--------------------------------------------- 411

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 463 mktsvlgvkdetAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESA 542
Cdd:PRK12584  412 ------------SGVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESA 479

                         570       580       590
                  ....*....|....*....|....*....|.
gi 1829629007 543 NYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12584  480 NFNKNNILAQSGSYAMSQANTVQQNILRLLT 510
PRK12806 PRK12806
flagellin; Provisional
 5-573 3.16e-52

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 185.66  E-value: 3.16e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKATIGAT 164
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSIGSI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 165 QSSKIGLTRFETGGRITSGGEVQFTLKN----YNGIDDFKFQKVVISTSVGTGLGALADEINKNAdKTGVRATFTVETRG 240
Cdd:PRK12806  165 KASSIGGIATATGTEVAGAAATDITIAIgggaATSINSSANFTGALNGQDATSAYAKAAAINDAG-IGGLSVTASTSGTQ 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 241 MAAVRAGTTSD--DFAINGVKI-GKVDYKDGDSNGALVSAINSVKDTTGVEASIDAnGQLLLTSREGRGIKidgniggga 317
Cdd:PRK12806  244 AVGAIGGTAGDtyNLTINGVAIyTNLDVATALTNSDLRDAINGVSNQTGVVASLNG-GNMTLTAADGRNIT--------- 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 318 finanmkenygrlslVKNDGKDILVSGTGLSFAGfgansfisqasvslreskGRFDANIADAMGFGSVNKGVVIGGFStv 397
Cdd:PRK12806  314 ---------------VTESGTGFTAGTDGLTVTG------------------GAFDGALRGTLSISAVDTIAIGGTVA-- 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 398 saymssegsgfSAGSGYSIGSGkgysatltgnatfistasaasrVYNVssgsgfstgsnlsqfatmktsvlgvkdETAGV 477
Cdd:PRK12806  359 -----------NIGLSANISKD----------------------TVGI---------------------------DSLDV 378

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 478 TTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYA 557
Cdd:PRK12806  379 STASGAQTAIKRIDAALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAM 458

                         570
                  ....*....|....*.
gi 1829629007 558 MAQANSVQQNVLRLLQ 573
Cdd:PRK12806  459 LAQANSLPQSVLSLLG 474
PRK08869 PRK08869
polar flagellin E;
5-573 1.25e-47

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 170.50  E-value: 1.25e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK08869    4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTvkatigat 164
Cdd:PRK08869   84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEA-------- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 165 qsskigltrfetggritsggeVQFTLKNYNgiddfkfqkvvistsvgtglgaladeinkNADKTGVRATFTVETRGMAAV 244
Cdd:PRK08869  156 ---------------------VSLDLKSMR-----------------------------SDAKIMGGVSYDAEGGADKDW 185

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 245 RAGTTSDDFAINGVKIG------KVDYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGikidgnigggaf 318
Cdd:PRK08869  186 TVGAGNTDLNVSFDDKGgetqaiTINAKAGDDIEELATYINGQTDGVGASVSEDGKLQLFAAGQKVSG------------ 253

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 319 inanmkenygrlslvkndgkdilvsgtGLSFAGfgansfisqasvslreskgrfdaNIADAMGFGSvnkgvviGGFSTVS 398
Cdd:PRK08869  254 ---------------------------GVSFSG-----------------------GLAAELGLGN-------ATAVTVD 276

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 399 aymssegsgfsagsgysigsgkgysatltgnatfistasaasrvynvssgsgfstgsnlsqfatmktsvlgvkdeTAGVT 478
Cdd:PRK08869  277 ---------------------------------------------------------------------------DLDIS 281

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 479 TLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAM 558
Cdd:PRK08869  282 TVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSIL 361

                         570
                  ....*....|....*
gi 1829629007 559 AQANSVQQNVLRLLQ 573
Cdd:PRK08869  362 AQAKQAPQSALSLLQ 376
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-142 6.32e-40

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 142.10  E-value: 6.32e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829629007  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNF 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
PRK12802 PRK12802
flagellin; Provisional
 1-181 2.47e-32

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 125.76  E-value: 2.47e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT 160
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGANTGQSNQIT 160

                         170       180
                  ....*....|....*....|.
gi 1829629007 161 IGATQSSKIGLTRFETGGRIT 181
Cdd:PRK12802  161 FGLSASFDATGLGVGSGTLIT 181
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-164 4.49e-32

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 123.82  E-value: 4.49e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:COG1344     2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFIN-QEFQIGASSNQTVKATIG 162
Cdd:COG1344    82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDtPPFQVDYQGDAGQRTAAL 161


                  ..
gi 1829629007 163 AT 164
Cdd:COG1344   162 GA 163
PRK08026 PRK08026
FliC/FljB family flagellin;
5-573 9.89e-31

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 126.01  E-value: 9.89e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK08026    5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFiNQEFQIGASSNQTVKATIGAT 164
Cdd:PRK08026   85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDG-SMKIQVGANDGETITIDLKKI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 165 QSSKIGLTRFETGGRITSGGEVQfTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADKTGVRATFTvetrgmaav 244
Cdd:PRK08026  164 DSDTLGLDGFNVNGKGTVANTAA-TVSDLTAAGATLDTTGLYDVKTKNAALTTADALAKLGDGDKVTATAT--------- 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 245 rAGTTSDDFAINGVKIGKVDYKDGDSNGALVSAINSVKDTTgVEASIDANGQLLLTSREGRgIKIDGNI---GGGAFINA 321
Cdd:PRK08026  234 -GGDYTYNAKSGKYQAADLAATLTPDVGGTAGASYTIKDGT-YEVNVDSDGKITLGGSALY-IDATGNLttnNAGAATKA 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 322 NMKEnygrlsLVKNDGKDILVSGTGLSFAGFGANSFISQASVSlreskgrfdaniadaMGFGSVNKGVVIGGFSTvsaym 401
Cdd:PRK08026  311 TLDA------LKKTASEGAATAKAALAAAGVTVADGVTAKTVK---------------MSYTDKNGKVIDGGYAV----- 364

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 402 ssegsgFSAGSGYSIGSGKGYSATLTGNATFISTASAASRVYNVSSGSGFSTGSNLSQFATMKTSVL-GVKDETAGVTTL 480
Cdd:PRK08026  365 ------KTGDDYYAADYDEITGAISATTTYYTAKDGTTKTAANKLGGADGKTEVVTIDGKTYVASDGkQTTLAEAAATTT 438

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 481 KGAMAVMDiaeTAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 560
Cdd:PRK08026  439 ENPLAALD---AAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAK 515

                         570
                  ....*....|...
gi 1829629007 561 ANSVQQNVLRLLQ 573
Cdd:PRK08026  516 ANQVPQQVLSLLQ 528
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 487-572 3.75e-27

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 104.72  E-value: 3.75e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 487 MDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQ 566
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 1829629007 567 NVLRLL 572
Cdd:pfam00700  81 SLLNLL 86
PRK12804 PRK12804
flagellin; Provisional
 4-211 1.24e-26

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 110.09  E-value: 1.24e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12804    2 RINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  84 EQLKILDTIKTKATQAAQDG-QSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQE---------FQIGASS 153
Cdd:PRK12804   82 ETHSILQRVRELVVQAGNTGtQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAApaagtksltFQIGANA 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829629007 154 NQTVKATIGATQSSKIGLTrfETGGRITSGGEVqftlknyNGIDDFKFQKVVISTSVG 211
Cdd:PRK12804  162 AQQLSVNIEAMSADALGVK--DTDGTLVTGKSV-------SDIDVTKFANAAAAADGG 210
PRK06819 PRK06819
FliC/FljB family flagellin;
5-572 5.79e-26

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 109.87  E-value: 5.79e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK06819    5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNfINQEFQIGASSNQTVKATIGAT 164
Cdd:PRK06819   85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAED-TTMSIQVGANDGETIDINLQKI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 165 QSSKIGLTRFETGGRITSGGEVQFTLKNYNGIddfkfqkvvistsvgtglgaladeinknadKTGVRATFTVETRGMAAV 244
Cdd:PRK06819  164 DSKSLGLGSFSVSGVSGALTSLTFTDTALDTS------------------------------VTGVTTTTALDFSDISTF 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 245 RAGTTSDDFAINGVKIGKVDYKDGDSNGAlvsainsvkdtTGVEASIDAngqllltsregrgikIDGNIGGGAFINANmk 324
Cdd:PRK06819  214 AKGATVHGIGDVGTDGAYADGYVIRTTDG-----------KQYKGEVDA---------------TNGKVTFADDANGD-- 265

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 325 enygrlslvkndgkdilvsgtglsfagfgansfisqasvslreskgrfdaniadamgfgsvnkgvviggfstvsaymsse 404
Cdd:PRK06819      --------------------------------------------------------------------------------

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 405 gsgfsagsgysigsgkgySATLTGNATFISTASAASrvynvssgsgfstgsnlsqfatmktsvlgvkdeTAGVTTLKgam 484
Cdd:PRK06819  266 ------------------PITDATKLEAAAQFSPAG---------------------------------KATASPLE--- 291

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 485 avmDIaETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSV 564
Cdd:PRK06819  292 ---TL-DDALKQVDGLRSSLGAVQNRFESTVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQV 367


                  ....*...
gi 1829629007 565 QQNVLRLL 572
Cdd:PRK06819  368 PQTVLSLL 375
PRK12807 PRK12807
flagellin; Provisional
 4-234 2.50e-20

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 91.42  E-value: 2.50e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12807    2 RINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASsnqtvkatiga 163
Cdd:PRK12807   82 SVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSIS----------- 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1829629007 164 tqSSKIGLTRFETGgriTSGGEVQFTLKNYNGID-----DFKFQKVVISTSVGTGLGALADEINKNADKtgvRATF 234
Cdd:PRK12807  151 --GAEISIETLDSS---ATNQQITIKLANTTAEKlgidaTTSNISISGAASALAAISALNTALNTVAGN---RATL 218
PRK12808 PRK12808
flagellin; Provisional
 4-573 1.97e-17

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 85.01  E-value: 1.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12808    2 RINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNfINQEFQIGASSNQTVKATIGA 163
Cdd:PRK12808   82 SVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSN-SSINIQTLDSSDGDKQIGIDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 164 TQSSKIGLtrfetggritsggevqftlknynGIDDFKFQKVVISTSVGTGLGALADEINKNAdKTGVRATFTVETRGMAA 243
Cdd:PRK12808  161 KSATLEAL-----------------------GINDLSIGANTDIEAVSTKIAALDKNTIAKA-TVEAKAAFDKAKDDTKA 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 244 VRagTTSDDFAINGVKIGKVdykdgDSNGALVSAINSVKDTTGVEASIdANGQLLLTSREGRGIKIDgnigggafinanm 323
Cdd:PRK12808  217 ED--SNILDAAADGFKDGKA-----DDAAKDVEAIKTALSAFTGAATL-EEAEAAKTAFEVAQKDLV------------- 275

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 324 kenygrlslvknDGKDILVSGTGLSFAGFGANSFISQASVSLRESKGRFDANIADAMGFGSVNKGVVIggfSTVSAYMSS 403
Cdd:PRK12808  276 ------------DTYTKKAALTKDAVADLDTAKTTSTRSKAAKDLVAAYDKAKSGAKPNDVAKAYLEA---KMAYEKDNN 340

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 404 EGSGFSagsgysigsgKGYSATLTGNATFISTASAASRVYNVSsgsgfstgsnlsqfatmktsvlgvKDETAGVTTLKGA 483
Cdd:PRK12808  341 AIDGKS----------KLEAADDALEKDAIKTDASKVLVPKLE------------------------AAKKATTNSKADS 386

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 484 MAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANS 563
Cdd:PRK12808  387 LDAVKAIDEALKTVADNRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQ 466

                         570
                  ....*....|
gi 1829629007 564 VQQNVLRLLQ 573
Cdd:PRK12808  467 TPQMVSKLLQ 476
PRK12803 PRK12803
flagellin; Provisional
 5-139 6.51e-17

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 82.16  E-value: 6.51e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK12803    3 INHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNE 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1829629007  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLS 139
Cdd:PRK12803   83 VEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLS 137
PRK12802 PRK12802
flagellin; Provisional
 437-573 3.62e-16

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 79.15  E-value: 3.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 437 SAASRVYNVSSGSGFSTGSNLSQFATMKTSVLGV--------KDETAGVTTLKGAMAVMDiaeTAITNLDQIRADIGSVQ 508
Cdd:PRK12802  141 SAGTMTFQVGANTGQSNQITFGLSASFDATGLGVgsgtlitgADSAAAETNAQAAITAID---AALQTINTTRADLGAAQ 217

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1829629007 509 NQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12802  218 NRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK12804 PRK12804
flagellin; Provisional
 473-573 7.61e-16

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 78.50  E-value: 7.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 473 ETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQ 552
Cdd:PRK12804  201 ANAAAAADGGFDDQLKIVDGAIKQVSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQ 280

                          90       100
                  ....*....|....*....|.
gi 1829629007 553 SGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12804  281 ASQAMLAQANQQPQNVLQLLR 301
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
485-573 3.47e-14

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 72.59  E-value: 3.47e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 485 AVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANsv 564
Cdd:COG1344   159 AALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQAN-- 236


                  ....*....
gi 1829629007 565 QQNVLRLLQ 573
Cdd:COG1344   237 QLSLLDLLR 245
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-141 1.88e-13

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 71.23  E-value: 1.88e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGT 138
PRK12805 PRK12805
FliC/FljB family flagellin;
4-138 2.98e-13

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 70.67  E-value: 2.98e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12805    2 KVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALS 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLL 138
Cdd:PRK12805   82 SMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLL 136
PRK06663 PRK06663
flagellar hook-associated protein 3;
4-146 5.64e-11

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 64.71  E-value: 5.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK06663    3 RVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQ 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQE 146
Cdd:PRK06663   83 SITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGTKIDTE 145
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
4-141 6.67e-11

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 65.37  E-value: 6.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK14692    2 RITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQ 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANtTSFNGKQLLSGN 141
Cdd:PRK14692   82 DMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLAN-TSVNGQYLFAGS 138
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 22-140 1.24e-09

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 60.99  E-value: 1.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  22 SKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQ 101
Cdd:PRK08412   20 QNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTMEAFKTKLIQAAN 99

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1829629007 102 DGQSLKTRTMLQADINRLMEELDNIANtTSFNGKQLLSG 140
Cdd:PRK08412  100 DVHSETSREAIANDLEALKEHMINLAN-TSIGGEFLFSG 137
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 31-270 4.23e-09

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 58.77  E-value: 4.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  31 RLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRT 110
Cdd:PRK08870   29 QLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARELVVQAGNGSLSDSDRQ 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 111 MLQADINRLMEELDNIANTTSFNGKQLLSGNFI-NQEFQIGASSN------QTV-KATIGATQSSKIGLTRFETGGRITS 182
Cdd:PRK08870  109 AIATELQGLRDQLLNLANSKDGSGNYLFAGTQSgTQPFAFDASGNvvysgdQGQrQVQVADSVQVATNDPGDEVFMSVPN 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 183 GGevqftlknyngiddfkFQKVVISTSVGTGLGALADEINKNADKTGVRATFTVETRGMAAVRAGTTSDDfAINGVKIGK 262
Cdd:PRK08870  189 GG----------------GDYVPNANASNTGTGLLGSASITDPSDPVNGDTYTITFTDNGAGGTNTYVTD-SSTGTVVTA 251


                  ....*...
gi 1829629007 263 VDYKDGDS 270
Cdd:PRK08870  252 QAYDAGQP 259
PRK12807 PRK12807
flagellin; Provisional
 462-573 5.47e-07

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 51.36  E-value: 5.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 462 TMKTSVLGV--KDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAA 539
Cdd:PRK12807  174 NTTAEKLGIdaTTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDADMAK 253

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1829629007 540 ESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12807  254 EMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 4-140 8.30e-07

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 51.15  E-value: 8.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK07701    2 RVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALD 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTsFNGKQLLSG 140
Cdd:PRK07701   82 QATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQ-YNGRYIFNG 137
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 252-301 3.69e-06

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 44.13  E-value: 3.69e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1829629007 252 DFAINGVKIG--KVDYKDGDSNGALVSAINSVKDTTGVEASIDAN-GQLLLTS 301
Cdd:pfam07196   1 TLTINGVGGGgtDISVSAGDSLGDLADAINAVSSKTGVSASIDTDtGRLVLTS 53
PRK12803 PRK12803
flagellin; Provisional
 469-573 4.40e-06

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 49.04  E-value: 4.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 469 GVKDETAGVTTLKGAMAVMDIaETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKAN 548
Cdd:PRK12803  232 GVNSPVNVTTTVDANMSLAKI-ENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNS 310

                          90       100
                  ....*....|....*....|....*
gi 1829629007 549 ILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12803  311 ILTQSAMAMIAQANQVPQYVLSLLR 335
PRK12688 PRK12688
flagellin; Reviewed
 12-364 1.82e-04

flagellin; Reviewed


Pssm-ID: 171664 [Multi-domain]  Cd Length: 751  Bit Score: 44.48  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  12 LNAKANADLnsksLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDT 91
Cdd:PRK12688   15 LSLQSTADL----LATTQSRLSTGKKVNSALDNPTNFFTAQSLDNRASDINNLLDGIGNGVQILQAANTGITSLQKLIDS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  92 IKTKATQAAQDGQSLKTRTMLQADINRLMEelDNIANTTSFNGKQLLSGnfINQEFQIGASSNQTVKATIGATQSSKIGL 171
Cdd:PRK12688   91 AKSIANQALQTVVGYSTKSNVSTTISGATA--DDLRGTTSYASATASSN--VLYDGAAGGATAATGATTLGGTAGSLAGT 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 172 TRFETGGRITSGGEVQftlknyngiddfkfqkvVISTSVGTGLGALADEINKNADKTGVRA-TFTVETRGMAAVRAGTTS 250
Cdd:PRK12688  167 GATAGDGTTALTGTIT-----------------LIATNGTTATGLLGNAQPADGDTLTVNGkTITFRSGAAPASTAVPSG 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 251 DDFAINGVKIGKVDYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGikIDGNIGGGAfinanmkenygrL 330
Cdd:PRK12688  230 SGVSGNLVTDGNGNSTVYLGSATVNDLLSAIDLASGVQTVTISSGAATIAVSASGG--AVSAAAAGA------------V 295

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1829629007 331 SLVKNDGKDILVSGTGLSFAGFGANSFISQASVS 364
Cdd:PRK12688  296 TLKSSTGADLSVTGKADLLKALGLTTATGAGNAT 329
PRK12687 PRK12687
flagellin; Reviewed
 7-139 2.55e-04

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 43.50  E-value: 2.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   7 TNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQantlGQAISNGNDALGILQTADKAMDEQL 86
Cdd:PRK12687    6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSD----NEALSAVSDALGLGAATVDTMYTAL 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1829629007  87 KI--------LDTIKTKATQAAQDGQSlktRTMLQADINRLMEELDNIANTTSFNGKQLLS 139
Cdd:PRK12687   82 TSvvgdsksgLTALKAKLVAAREPGID---RTKIQSEITAIQNDLKNTAGLAVFNGENWLS 139
flgL PRK12717
flagellar hook-associated protein 3;
4-141 3.34e-04

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 43.58  E-value: 3.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12717    2 RISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLT 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1829629007  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Cdd:PRK12717   82 SINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGS 139
PRK14708 PRK14708
flagellin; Provisional
 12-116 7.13e-04

flagellin; Provisional


Pssm-ID: 173171 [Multi-domain]  Cd Length: 888  Bit Score: 42.59  E-value: 7.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  12 LNAKANADLnsksLDASLSRLSSGLRINSAADDASGMAIADSLRSQA---NTLGQAISNGndaLGILQTADKAMDEQLKI 88
Cdd:PRK14708   15 SSLQATADL----LATTQSRLSSGKKVNTALDNPTNFFTAASLDSRAsdiNNLLDGIGNG---VQILQAANTGITSLNKL 87

                          90       100
                  ....*....|....*....|....*...
gi 1829629007  89 LDTIKTKATQAAQDGQSLKTRTMLQADI 116
Cdd:PRK14708   88 VDSAKSIANQALQTNVGYATKSNVSATI 115
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 188-238 1.02e-03

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 37.20  E-value: 1.02e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1829629007 188 FTLKNYNGIDDfkfqkvVISTSVGTGLGALADEINKNADKTGVRATFTVET 238
Cdd:pfam07196   2 LTINGVGGGGT------DISVSAGDSLGDLADAINAVSSKTGVSASIDTDT 46
PRK12805 PRK12805
FliC/FljB family flagellin;
465-572 2.19e-03

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 40.24  E-value: 2.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007 465 TSVLGVKDETAGVTTLKGAMA-----VMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAA 539
Cdd:PRK12805  173 TITLGSGSTVAGYSALSVADAdssqeATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAA 252

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1829629007 540 ESANYSKANILAQSGSYAMAQANSVQQNVLRLL 572
Cdd:PRK12805  253 EMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 17-182 7.72e-03

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 39.02  E-value: 7.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  17 NADLNSKSLDASLS-RLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTK 95
Cdd:PRK12718   14 NGVLNQEAAMARLQeQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829629007  96 ATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSG-NFINQEFQIGASSNQTVKATIGATQSSKIGLTRF 174
Cdd:PRK12718   94 VVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGyKGFTQPYSFDAATGKVTYNGDLGQRGIQVDQSRL 173


                  ....*...
gi 1829629007 175 ETGGRITS 182
Cdd:PRK12718  174 MSGGDVGS 181
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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