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Conserved domains on  [gi|1815807024|gb|QIE72513|]
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hypothetical protein G5C59_04750 [Glaesserella parasuis]

Protein Classification

porin family protein( domain architecture ID 229388)

porin family protein is a member of a large superfamily consisting of classical (gram-negative ) porins which are non-specific channels for small hydrophillic molecules, maltoporin-like channels which have specificities for various sugars, and ligand-gated protein channels which cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OM_channels super family cl21487
Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in ...
 2-425 5.53e-137

Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20), which associate as trimers. Maltoporin-like channels have specificities for various sugars and form 18 beta-stranded barrels (18,22), which associate as trimers. Ligand-gated protein channels cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force and they form monomeric, (22,24) barrels. The 150-200 N-terminal residues form a plug that blocks the channel from the periplasmic end.


The actual alignment was detected with superfamily member PRK10716:

Pssm-ID: 473880  Cd Length: 435  Bit Score: 399.47  E-value: 5.53e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024   2 NKFTKTALASIFTFSAAGASAAAFQLAEVSTSGLGMAYAGNAAVADNASVVATNPALMTKFKQVEISAGGVYVDADVDVE 81
Cdd:PRK10716    5 TLFTKSALAVAVALISSQAWAAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNIS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  82 GSfkgsfnrtvngraipSSATGNANAKDIIPSAIVPNLYVVAPISERFAVGGGVNVNYGLKSEFEKTYSAGVLAGKTKLS 161
Cdd:PRK10716   85 GT---------------SPSGRSLDADNIAPTAWVPNLHFVAPINDQWGWGASATSNYGLATEFNDTYAAGSVGGKTDLE 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 162 AVNYNFSSAYDLGYGFSFGAGLNAVHAKATLERHFGALNPM---------------APTATASRLKGDKWGFRWNVGLTY 226
Cdd:PRK10716  150 TMNLNLSGAYRLNNAFSFGLGFNAVYARAKIERFAGDLGQLvagqgqalaataggiPSNTEIAHLNGNQWGFGWNAGILY 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 227 DINENNRLGVAYHSPVDLRFKGKY----------------VGTQSANveIPGRLNLELPAYWEISGYHKLTEKLAVQYSY 290
Cdd:PRK10716  230 ELDKNNRYALTYRSEVKIDFDGDYssdlpvafnniglplpTGTGGAT--QPGSLTLNLPEMWEVSGYNRVAPQWAIHYSL 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 291 KKTHWNSFRELRATDNNGKVLLQKDKKFNNNSRIALGVSYDVIEALTLRAGIAYDESASVA-HPSISIPDTYRTWYTLGA 369
Cdd:PRK10716  308 AYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAqNRSISIPDQDRFWLSAGT 387

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1815807024 370 TYRFTPNLSVDLSYAHLRGSKNTFTESQVTavtsavgeFKVKSTANLYGLNVNYKF 425
Cdd:PRK10716  388 TYAFNKDASVDVGVSYMHGQSVKINEGPYQ--------FESEGKAWLYGTNFNYAF 435
 
Name Accession Description Interval E-value
PRK10716 PRK10716
long-chain fatty acid transporter FadL;
2-425 5.53e-137

long-chain fatty acid transporter FadL;


Pssm-ID: 236741  Cd Length: 435  Bit Score: 399.47  E-value: 5.53e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024   2 NKFTKTALASIFTFSAAGASAAAFQLAEVSTSGLGMAYAGNAAVADNASVVATNPALMTKFKQVEISAGGVYVDADVDVE 81
Cdd:PRK10716    5 TLFTKSALAVAVALISSQAWAAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNIS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  82 GSfkgsfnrtvngraipSSATGNANAKDIIPSAIVPNLYVVAPISERFAVGGGVNVNYGLKSEFEKTYSAGVLAGKTKLS 161
Cdd:PRK10716   85 GT---------------SPSGRSLDADNIAPTAWVPNLHFVAPINDQWGWGASATSNYGLATEFNDTYAAGSVGGKTDLE 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 162 AVNYNFSSAYDLGYGFSFGAGLNAVHAKATLERHFGALNPM---------------APTATASRLKGDKWGFRWNVGLTY 226
Cdd:PRK10716  150 TMNLNLSGAYRLNNAFSFGLGFNAVYARAKIERFAGDLGQLvagqgqalaataggiPSNTEIAHLNGNQWGFGWNAGILY 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 227 DINENNRLGVAYHSPVDLRFKGKY----------------VGTQSANveIPGRLNLELPAYWEISGYHKLTEKLAVQYSY 290
Cdd:PRK10716  230 ELDKNNRYALTYRSEVKIDFDGDYssdlpvafnniglplpTGTGGAT--QPGSLTLNLPEMWEVSGYNRVAPQWAIHYSL 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 291 KKTHWNSFRELRATDNNGKVLLQKDKKFNNNSRIALGVSYDVIEALTLRAGIAYDESASVA-HPSISIPDTYRTWYTLGA 369
Cdd:PRK10716  308 AYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAqNRSISIPDQDRFWLSAGT 387

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1815807024 370 TYRFTPNLSVDLSYAHLRGSKNTFTESQVTavtsavgeFKVKSTANLYGLNVNYKF 425
Cdd:PRK10716  388 TYAFNKDASVDVGVSYMHGQSVKINEGPYQ--------FESEGKAWLYGTNFNYAF 435
Toluene_X pfam03349
Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from ...
 25-425 5.12e-132

Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.


Pssm-ID: 427255 [Multi-domain]  Cd Length: 421  Bit Score: 386.38  E-value: 5.12e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  25 FQLAEVSTSGLGMAYAGNAAVADNASVVATNPALMTKFKQVEISAGGVYVDADVDVEGSfkgSFNRTVNGraipssATGN 104
Cdd:pfam03349   2 FQLNEQSASGLGRAYAGEAAIADDASVVWRNPAAMTLLDGAEFSLGLIYVDPDVDVTGN---SGTGQGGN------DYGP 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 105 ANAKDIIPSAIVPNLYVVAPISERFAVGGGVNVNYGLKSEFEKTYSAGVLAGKTKLSAVNYNFSSAYDLGYGFSFGAGLN 184
Cdd:pfam03349  73 GNGGDAAPNALVPNGYLIVPINDQFAFGLSLYTPYGLATEYDDNYAGRYHGGYTKLQTINLNLSIAYRVNDELSVGLGVT 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 185 AVHAKATLERHFGALNPMA-------------PTATASRLKGDKWGFRWNVGLTYDINENNRLGVAYHSPVDLRFKGKY- 250
Cdd:pfam03349 153 AVRADGKLSRLAGLLQQAKeipgvagpnigpsNADNLSHLKGDDTSPGFNLGALYEPDEDNRIGFTYRSKVKMKLKGHYe 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 251 -------------VGTQSANVEIPGRLNLELPAYWEISGYHKLTEKLAVQYSYKKTHWNSFRELRATDNNGKVLLQKDKK 317
Cdd:pfam03349 233 vdygpgalglglgLGGAATGATVPGTLTITLPAIAELSGFHQFNDQWAIHYSVKWTGWSSFDELTAVFAKGKTSFTKDEG 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 318 FNNNSRIALGVSYDVIEALTLRAGIAYDESA-SVAHPSISIPDTYRTWYTLGATYRFTPNLSVDLSYAHLRGSKNTFTES 396
Cdd:pfam03349 313 YRDTWRWALGTTYQVNDRLTLRAGVAYDPSPtPDENRTIRIPDGDRTWYSLGATYAFTPDLTIDAGFAYLFGKKVTINEN 392

                         410       420
                  ....*....|....*....|....*....
gi 1815807024 397 QVTAVTSAVGEFKVKSTANLYGLNVNYKF 425
Cdd:pfam03349 393 NAGSDPGGGLDGDSEGKAYLLALQANYRF 421
FadL COG2067
Long-chain fatty acid transport protein [Lipid transport and metabolism];
25-425 5.19e-119

Long-chain fatty acid transport protein [Lipid transport and metabolism];


Pssm-ID: 441670 [Multi-domain]  Cd Length: 403  Bit Score: 352.29  E-value: 5.19e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  25 FQLAEVSTSGLGMAYAGNAAVADNASVVATNPALMTKFKQVEISAGGVYVDADVDVEGSFKGSfnrtvngraipssaTGN 104
Cdd:COG2067    19 FQLNEQGARALGMAGAGVAALADDASAVFYNPAGLAFLKGTQLSLGLTLIDPDVDFTGTGTGS--------------DGS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 105 ANAkdiiPSAIVPNLYVVAPISERFAVGGGVNVNYGLKSEFEKTYSAGVLAGKTKLSAVNYNFSSAYDLGYGFSFGAGLN 184
Cdd:COG2067    85 ADG----PVFVVPNFYYVYPLNDRLAFGLGVYAPFGLGTDYDDDWPGRYLATKSELKTININPSVAYKVNDKLSVGAGLD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 185 AVHAKATLERHFGALNPmAPTATASRLKGDKWGFRWNVGLTYDINENNRLGVAYHSPVDLRFKGKYVGTQSANV----EI 260
Cdd:COG2067   161 LVYGDAELKRAVDFAGL-APSDGSAELKGDDWGFGFNLGLLYKPTDNLRLGLSYRSKVKMDLDGDATFSGPASLglfaDT 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 261 PGRLNLELPAYWEISGYHKLTEKLAVQYSYKKTHWNSFRELRATDNN--GKVLLQKDKKFNNNSRIALGVSYDVIEALTL 338
Cdd:COG2067   240 AGSADLDLPATLSLGVAYKLTDKLTLAADVTWTNWSSFDELAITFDNpvGSPDSVLPFNWKDTWVYALGAEYKLNDKLTL 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 339 RAGIAYDESA-SVAHPSISIPDTYRTWYTLGATYRFTPNLSVDLSYAHLRGSKNTFTESQVTAVTSAvgefKVKSTANLY 417
Cdd:COG2067   320 RAGYAYDESPvPDETRNPLIPDGDRHWLSLGAGYKLSKNLSLDLAYAYLFGKDRTINNTSTPGNLNG----TYKASANIL 395


                  ....*...
gi 1815807024 418 GLNVNYKF 425
Cdd:COG2067   396 GLSLSYKF 403
 
Name Accession Description Interval E-value
PRK10716 PRK10716
long-chain fatty acid transporter FadL;
2-425 5.53e-137

long-chain fatty acid transporter FadL;


Pssm-ID: 236741  Cd Length: 435  Bit Score: 399.47  E-value: 5.53e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024   2 NKFTKTALASIFTFSAAGASAAAFQLAEVSTSGLGMAYAGNAAVADNASVVATNPALMTKFKQVEISAGGVYVDADVDVE 81
Cdd:PRK10716    5 TLFTKSALAVAVALISSQAWAAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNIS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  82 GSfkgsfnrtvngraipSSATGNANAKDIIPSAIVPNLYVVAPISERFAVGGGVNVNYGLKSEFEKTYSAGVLAGKTKLS 161
Cdd:PRK10716   85 GT---------------SPSGRSLDADNIAPTAWVPNLHFVAPINDQWGWGASATSNYGLATEFNDTYAAGSVGGKTDLE 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 162 AVNYNFSSAYDLGYGFSFGAGLNAVHAKATLERHFGALNPM---------------APTATASRLKGDKWGFRWNVGLTY 226
Cdd:PRK10716  150 TMNLNLSGAYRLNNAFSFGLGFNAVYARAKIERFAGDLGQLvagqgqalaataggiPSNTEIAHLNGNQWGFGWNAGILY 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 227 DINENNRLGVAYHSPVDLRFKGKY----------------VGTQSANveIPGRLNLELPAYWEISGYHKLTEKLAVQYSY 290
Cdd:PRK10716  230 ELDKNNRYALTYRSEVKIDFDGDYssdlpvafnniglplpTGTGGAT--QPGSLTLNLPEMWEVSGYNRVAPQWAIHYSL 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 291 KKTHWNSFRELRATDNNGKVLLQKDKKFNNNSRIALGVSYDVIEALTLRAGIAYDESASVA-HPSISIPDTYRTWYTLGA 369
Cdd:PRK10716  308 AYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAqNRSISIPDQDRFWLSAGT 387

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1815807024 370 TYRFTPNLSVDLSYAHLRGSKNTFTESQVTavtsavgeFKVKSTANLYGLNVNYKF 425
Cdd:PRK10716  388 TYAFNKDASVDVGVSYMHGQSVKINEGPYQ--------FESEGKAWLYGTNFNYAF 435
Toluene_X pfam03349
Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from ...
 25-425 5.12e-132

Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.


Pssm-ID: 427255 [Multi-domain]  Cd Length: 421  Bit Score: 386.38  E-value: 5.12e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  25 FQLAEVSTSGLGMAYAGNAAVADNASVVATNPALMTKFKQVEISAGGVYVDADVDVEGSfkgSFNRTVNGraipssATGN 104
Cdd:pfam03349   2 FQLNEQSASGLGRAYAGEAAIADDASVVWRNPAAMTLLDGAEFSLGLIYVDPDVDVTGN---SGTGQGGN------DYGP 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 105 ANAKDIIPSAIVPNLYVVAPISERFAVGGGVNVNYGLKSEFEKTYSAGVLAGKTKLSAVNYNFSSAYDLGYGFSFGAGLN 184
Cdd:pfam03349  73 GNGGDAAPNALVPNGYLIVPINDQFAFGLSLYTPYGLATEYDDNYAGRYHGGYTKLQTINLNLSIAYRVNDELSVGLGVT 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 185 AVHAKATLERHFGALNPMA-------------PTATASRLKGDKWGFRWNVGLTYDINENNRLGVAYHSPVDLRFKGKY- 250
Cdd:pfam03349 153 AVRADGKLSRLAGLLQQAKeipgvagpnigpsNADNLSHLKGDDTSPGFNLGALYEPDEDNRIGFTYRSKVKMKLKGHYe 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 251 -------------VGTQSANVEIPGRLNLELPAYWEISGYHKLTEKLAVQYSYKKTHWNSFRELRATDNNGKVLLQKDKK 317
Cdd:pfam03349 233 vdygpgalglglgLGGAATGATVPGTLTITLPAIAELSGFHQFNDQWAIHYSVKWTGWSSFDELTAVFAKGKTSFTKDEG 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 318 FNNNSRIALGVSYDVIEALTLRAGIAYDESA-SVAHPSISIPDTYRTWYTLGATYRFTPNLSVDLSYAHLRGSKNTFTES 396
Cdd:pfam03349 313 YRDTWRWALGTTYQVNDRLTLRAGVAYDPSPtPDENRTIRIPDGDRTWYSLGATYAFTPDLTIDAGFAYLFGKKVTINEN 392

                         410       420
                  ....*....|....*....|....*....
gi 1815807024 397 QVTAVTSAVGEFKVKSTANLYGLNVNYKF 425
Cdd:pfam03349 393 NAGSDPGGGLDGDSEGKAYLLALQANYRF 421
FadL COG2067
Long-chain fatty acid transport protein [Lipid transport and metabolism];
25-425 5.19e-119

Long-chain fatty acid transport protein [Lipid transport and metabolism];


Pssm-ID: 441670 [Multi-domain]  Cd Length: 403  Bit Score: 352.29  E-value: 5.19e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  25 FQLAEVSTSGLGMAYAGNAAVADNASVVATNPALMTKFKQVEISAGGVYVDADVDVEGSFKGSfnrtvngraipssaTGN 104
Cdd:COG2067    19 FQLNEQGARALGMAGAGVAALADDASAVFYNPAGLAFLKGTQLSLGLTLIDPDVDFTGTGTGS--------------DGS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 105 ANAkdiiPSAIVPNLYVVAPISERFAVGGGVNVNYGLKSEFEKTYSAGVLAGKTKLSAVNYNFSSAYDLGYGFSFGAGLN 184
Cdd:COG2067    85 ADG----PVFVVPNFYYVYPLNDRLAFGLGVYAPFGLGTDYDDDWPGRYLATKSELKTININPSVAYKVNDKLSVGAGLD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 185 AVHAKATLERHFGALNPmAPTATASRLKGDKWGFRWNVGLTYDINENNRLGVAYHSPVDLRFKGKYVGTQSANV----EI 260
Cdd:COG2067   161 LVYGDAELKRAVDFAGL-APSDGSAELKGDDWGFGFNLGLLYKPTDNLRLGLSYRSKVKMDLDGDATFSGPASLglfaDT 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 261 PGRLNLELPAYWEISGYHKLTEKLAVQYSYKKTHWNSFRELRATDNN--GKVLLQKDKKFNNNSRIALGVSYDVIEALTL 338
Cdd:COG2067   240 AGSADLDLPATLSLGVAYKLTDKLTLAADVTWTNWSSFDELAITFDNpvGSPDSVLPFNWKDTWVYALGAEYKLNDKLTL 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 339 RAGIAYDESA-SVAHPSISIPDTYRTWYTLGATYRFTPNLSVDLSYAHLRGSKNTFTESQVTAVTSAvgefKVKSTANLY 417
Cdd:COG2067   320 RAGYAYDESPvPDETRNPLIPDGDRHWLSLGAGYKLSKNLSLDLAYAYLFGKDRTINNTSTPGNLNG----TYKASANIL 395


                  ....*...
gi 1815807024 418 GLNVNYKF 425
Cdd:COG2067   396 GLSLSYKF 403
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 91-385 1.69e-04

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 43.69  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024  91 TVNGRAIPSSATGNANAKDIIPSAIVPNLYVVA-PISERF---AVGGGVNVNYgLKSEFEKTYSAGVLAGKTKLSAVNYN 166
Cdd:COG4771   101 LIDGVPVNNPALGGGGDLSYIPPDDIERIEVIRgPASALYgsdAIGGVINIIT-KKPTDELEGSVSLGYGSNGNGTYSGS 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 167 FSSAYDLGyGFSFGAGLNAVHAKATLERHFGALNPMAPTatasrlkgdkWGFRWNVGLTYDINENNRLGVAYHSPVDLRF 246
Cdd:COG4771   180 LSLGGPGD-KLSFLLSGSYRDRDGYLDYRNGGFVGNSGY----------ERYNLNAKLGYRLSDNHRLSLSGGYSRQDRD 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 247 KGKYVGTQSANVEIPGRLNLELPAYWEISG--YHKLTEKLAVQYSYKKTHWNSF--------RELRATDNNGKVL-LQKD 315
Cdd:COG4771   249 GGPPTLGDTEISSDNAGDRDTTTDRGNYSLryNGDLGDNLDLSLYYSRTDRDSTngslggstGSFSDSDDTTYGLeLDLT 328

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 316 KKFNNNSRIALGVSY-----------------------------DVIEALTLRAGIAYDesasvaHPSISIPDTYRTWY- 365
Cdd:COG4771   329 YPLGGNHTLTLGAEYryddldsssflggadasrdtyglfaqdewKLTDKLTLTAGLRYD------YYSTFGASNYTAFSp 402

                         330       340
                  ....*....|....*....|
gi 1815807024 366 TLGATYRFTPNLSVDLSYAH 385
Cdd:COG4771   403 RLGLRYDLSDNLTLRASYGR 422
OmpC COG3203
Outer membrane porin OmpC/OmpF/PhoE [Cell wall/membrane/envelope biogenesis];
306-425 2.93e-03

Outer membrane porin OmpC/OmpF/PhoE [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442436 [Multi-domain]  Cd Length: 336  Bit Score: 39.60  E-value: 2.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 306 NNGKVLLQKDKKFNNnsrIALGVSYDVIEALTLRAGIAYDESASVAHpsisipDTYRTWYTLGATYRFTPNLSVDLSYAH 385
Cdd:COG3203   238 KNDDAGGAGNAKADG---YELGASYPFGPALTLSASYGYTDAKDGAD------DDDANQYALGADYALSKRTSLYAEYGY 308

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1815807024 386 LRGSKNtftesqvTAVTSAVGefkvkSTANLYGLNVNYKF 425
Cdd:COG3203   309 NDNDGN-------ANFTAAAG-----DTDDGVAVGLRHKF 336
LomR COG3637
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];
300-425 3.18e-03

Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442854 [Multi-domain]  Cd Length: 154  Bit Score: 38.03  E-value: 3.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815807024 300 ELRATDNNGKVLLQKDKKFNNNSRIALGVSYDVIEALTL--RAGIAY---DESASVAHPSISIPDTYRTWYTLGA--TYR 372
Cdd:COG3637    31 DYSYSDIDGDSSGTTGSGDLDYLSLRARAGYDFNDRFLPyaTAGVAYarvKVTGNTGSGTSGSDSDTRFGWTVGAgvEYA 110

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1815807024 373 FTPNLSVDLSYAHLRGSKNTFTesqvtavtsAVGEFKVKSTANLYGLNVNYKF 425
Cdd:COG3637   111 LTDNWSLRLEYRYTDLGDADFD---------GGGSVDVDLDSHTVRVGLNYRF 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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