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Conserved domains on  [gi|1805985841|gb|QHV98490|]
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family 10 glycosylhydrolase [Spirosoma endbachense]

Protein Classification

glycoside hydrolase family 10 protein( domain architecture ID 11447250)

glycoside hydrolase family 10 protein similar to Escherichia coli YddW and Bacillus subtilis sporulation protein YngK

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YddW COG1649
Uncharacterized lipoprotein YddW, UPF0748 family [Function unknown];
82-512 1.01e-156

Uncharacterized lipoprotein YddW, UPF0748 family [Function unknown];


:

Pssm-ID: 441255 [Multi-domain]  Cd Length: 451  Bit Score: 456.09  E-value: 1.01e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  82 PVENGPVPPKREFRAVWIATVDnidwpskkgLPVADQQREIIEMFDQQQQMGINAVVVQVRSAADAFYAKSSEPWSEWLT 161
Cdd:COG1649    21 PAPAAAPSPKREIRGVWLTTVD---------LSVLKQKAELIEILDRLKELGFNAVFFQVRPAGDALYPSAIEPWSEYLT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 162 GQQGLAPApfYDPLEFMIEQAHQRGMEFHAWFNLDRATFS-KVSSVAPTNIIYRKPDWVFTY--GGRKLFNLGMPAVRSY 238
Cdd:COG1649    92 GTQGKDPG--YDPLAFAIEEAHKRGLEVHAWFNPYRAAPNtDVSPLAPSHIAKKHPEWLTKYrdGGKLWLNPGHPEVRDF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 239 IAGIVANVVREYDVDGIHFDDYFYPFgvtgQALRDD---NIYQA-----NFNGMKKEDWRRDNINKLIAELRDSIRSNKP 310
Cdd:COG1649   170 ILDLVLEVVTRYDVDGIHFDDYFYPS----EFGYDDatyALYGQetgfdNPKDLSWADWRRDNVNRFVRRLYQAIKAVKP 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 311 WVKFGISPFGIWKNKSndaegsatTGGQSYYDLYADTRKWVRDGLIDYIVPQVYFSTEFSRVPYKTLVEWWTRNCG--KC 388
Cdd:COG1649   246 DVKFSISPFGIWRNSP--------TGLFAYDDLYQDWRTWVKEGWVDYIVPQLYWPDGNSAADFEKLLDWWAQQAKgrKV 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 389 HLYIGHGAYRVGhgserdpgwgrATEFPDQMRYNRQQRAVQGSIFFSAKSLKTNPlAIRDSLQTNFYRYPALVPPMTWLD 468
Cdd:COG1649   318 PLYIGIGLYKVP-----------PEEILRQIQLNRDLPGVAGVVFFSYESLWNNP-GLADALRQGLYRTPALVPAMPWLD 385

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1805985841 469 SIpplsprdlkaadtaeGVELFWQQPAEAEDGDGASYYIVYRFE 512
Cdd:COG1649   386 GT---------------GVLLSWQAPAEELAEALARLAVVPSSA 414
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
468-563 9.11e-09

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 58.09  E-value: 9.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 468 DSIPPLSPRDLKA-ADTAEGVELFWQQPaeaeDGDGASYYIVYRFEGIRSRLRLddprcivaqcVGE--STTRFVDKTTD 544
Cdd:COG3401   323 DLTPPAAPSGLTAtAVGSSSITLSWTAS----SDADVTGYNVYRSTSGGGTYTK----------IAEtvTTTSYTDTGLT 388

                          90
                  ....*....|....*....
gi 1805985841 545 PKKKYVYAVTAVDRLHNES 563
Cdd:COG3401   389 PGTTYYYKVTAVDAAGNES 407
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
21-109 7.69e-08

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14950:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 585  Bit Score: 55.20  E-value: 7.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  21 RPEPVVTKRPPVAARRPPisKPAPPKPTAAKPEPAKPTPATAIVPANK---PDTIEAESVADQMPVENGPVPPKREFRAV 97
Cdd:PRK14950  380 RPTPAPSTRPKAAAAANI--PPKEPVRETATPPPVPPRPVAPPVPHTPesaPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

                          90
                  ....*....|....*..
gi 1805985841  98 wIATVDNID-----WPS 109
Cdd:PRK14950  458 -IADGDVLEqleaiWKQ 473
 
Name Accession Description Interval E-value
YddW COG1649
Uncharacterized lipoprotein YddW, UPF0748 family [Function unknown];
82-512 1.01e-156

Uncharacterized lipoprotein YddW, UPF0748 family [Function unknown];


Pssm-ID: 441255 [Multi-domain]  Cd Length: 451  Bit Score: 456.09  E-value: 1.01e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  82 PVENGPVPPKREFRAVWIATVDnidwpskkgLPVADQQREIIEMFDQQQQMGINAVVVQVRSAADAFYAKSSEPWSEWLT 161
Cdd:COG1649    21 PAPAAAPSPKREIRGVWLTTVD---------LSVLKQKAELIEILDRLKELGFNAVFFQVRPAGDALYPSAIEPWSEYLT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 162 GQQGLAPApfYDPLEFMIEQAHQRGMEFHAWFNLDRATFS-KVSSVAPTNIIYRKPDWVFTY--GGRKLFNLGMPAVRSY 238
Cdd:COG1649    92 GTQGKDPG--YDPLAFAIEEAHKRGLEVHAWFNPYRAAPNtDVSPLAPSHIAKKHPEWLTKYrdGGKLWLNPGHPEVRDF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 239 IAGIVANVVREYDVDGIHFDDYFYPFgvtgQALRDD---NIYQA-----NFNGMKKEDWRRDNINKLIAELRDSIRSNKP 310
Cdd:COG1649   170 ILDLVLEVVTRYDVDGIHFDDYFYPS----EFGYDDatyALYGQetgfdNPKDLSWADWRRDNVNRFVRRLYQAIKAVKP 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 311 WVKFGISPFGIWKNKSndaegsatTGGQSYYDLYADTRKWVRDGLIDYIVPQVYFSTEFSRVPYKTLVEWWTRNCG--KC 388
Cdd:COG1649   246 DVKFSISPFGIWRNSP--------TGLFAYDDLYQDWRTWVKEGWVDYIVPQLYWPDGNSAADFEKLLDWWAQQAKgrKV 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 389 HLYIGHGAYRVGhgserdpgwgrATEFPDQMRYNRQQRAVQGSIFFSAKSLKTNPlAIRDSLQTNFYRYPALVPPMTWLD 468
Cdd:COG1649   318 PLYIGIGLYKVP-----------PEEILRQIQLNRDLPGVAGVVFFSYESLWNNP-GLADALRQGLYRTPALVPAMPWLD 385

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1805985841 469 SIpplsprdlkaadtaeGVELFWQQPAEAEDGDGASYYIVYRFE 512
Cdd:COG1649   386 GT---------------GVLLSWQAPAEELAEALARLAVVPSSA 414
GHL10 pfam02638
Glycosyl hydrolase-like 10; This is family of bacterial glycosyl-hydrolase-like proteins ...
 93-409 3.75e-75

Glycosyl hydrolase-like 10; This is family of bacterial glycosyl-hydrolase-like proteins falling into the family GHL10 as described above,.


Pssm-ID: 251441 [Multi-domain]  Cd Length: 311  Bit Score: 241.35  E-value: 3.75e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  93 EFRAVWIATVDNIDWPSKkglpvaDQQREIIEMFDQQQqmgINAVVVQVRSAADAFYAKSSEPWSEWLTGQQGLAPApfY 172
Cdd:pfam02638   1 EIRGVWLTNVDSNDWPDP------VQLQEAIALLDDLN---FNTVYPQVWNDGHALYPSAVAPWSGLKTGEKGGDPG--Y 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 173 DPLEFMIEQAHQRGMEFHAWFNLDRAT--FSKVSSVAPTNIIYRKPDWVFTY----GGRKLFNLGMPAVRSYIAGIVANV 246
Cdd:pfam02638  70 DPLAFMIDEAHKRNLRVHPWFEFGFNApaLSDLVKAHPAWLTTQHRDWTITSeggtGPRVWLNPGHPEVQDFITALVVDV 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 247 VREYDVDGIHFDDYFYPFGVTGQALRDDNIYQ--------ANFNGMKKEDWRRDNINKLIAELRDSIRSNKPWVKFGISP 318
Cdd:pfam02638 150 VRRYDVDGVQFDDHFYYPYSFGYDPITVALYRqetkqepfSNPEDDLNTDWRRDKISQLVQQLNPTIKAAKPNVTFSISP 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 319 FGIWKnksndaegsattggQSYYDLYADTRKWVRDGLIDYIVPQVYFSTE-FSRVPYKTLVEWWTRNC--GKCHLYIGHG 395
Cdd:pfam02638 230 AGVWN--------------FAYNCFLADWRTWIEAGVIDEIAPQVYREKQaAFTAEYQVLAVWWSKQVipTVVGILIGLA 295

                         330
                  ....*....|....
gi 1805985841 396 AYRVGHGSERDPGW 409
Cdd:pfam02638 296 NYKIPSPIKQDPQW 309
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
468-563 9.11e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 58.09  E-value: 9.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 468 DSIPPLSPRDLKA-ADTAEGVELFWQQPaeaeDGDGASYYIVYRFEGIRSRLRLddprcivaqcVGE--STTRFVDKTTD 544
Cdd:COG3401   323 DLTPPAAPSGLTAtAVGSSSITLSWTAS----SDADVTGYNVYRSTSGGGTYTK----------IAEtvTTTSYTDTGLT 388

                          90
                  ....*....|....*....
gi 1805985841 545 PKKKYVYAVTAVDRLHNES 563
Cdd:COG3401   389 PGTTYYYKVTAVDAAGNES 407
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 21-109 7.69e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 55.20  E-value: 7.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  21 RPEPVVTKRPPVAARRPPisKPAPPKPTAAKPEPAKPTPATAIVPANK---PDTIEAESVADQMPVENGPVPPKREFRAV 97
Cdd:PRK14950  380 RPTPAPSTRPKAAAAANI--PPKEPVRETATPPPVPPRPVAPPVPHTPesaPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

                          90
                  ....*....|....*..
gi 1805985841  98 wIATVDNID-----WPS 109
Cdd:PRK14950  458 -IADGDVLEqleaiWKQ 473
GH36 cd14791
glycosyl hydrolase family 36 (GH36); GH36 enzymes occur in prokaryotes, eukaryotes, and ...
 121-258 1.41e-07

glycosyl hydrolase family 36 (GH36); GH36 enzymes occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-galactosidase, alpha-N-acetylgalactosaminidase, stachyose synthase, and raffinose synthase. All GH36 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH36 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.


Pssm-ID: 269892 [Multi-domain]  Cd Length: 299  Bit Score: 53.38  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 121 EIIEMFDQQQQMGINAVVVQvrsaaDAFYAKSSEPWS---EWLTGQQGlapapFYDPLEFMIEQAHQRGMEFHAWFnldr 197
Cdd:cd14791    20 KLLELADAAAELGVELFVID-----DGWFGARNDDYAglgDWLVDPEK-----FPDGLKALADRIHALGMKFGLWL---- 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 198 ATFSkvssVAPTNIIYRK-PDWVFTYGGRKL--------FNLGMPAVRSYIAGIVANVVREYDVDGIHFD 258
Cdd:cd14791    86 EPEM----VGPDSELYREhPDWLLKDPGGPPvtgrnqyvLDLSNPEVRDYLREVIDRLLREWGIDYLKWD 151
 
Name Accession Description Interval E-value
YddW COG1649
Uncharacterized lipoprotein YddW, UPF0748 family [Function unknown];
82-512 1.01e-156

Uncharacterized lipoprotein YddW, UPF0748 family [Function unknown];


Pssm-ID: 441255 [Multi-domain]  Cd Length: 451  Bit Score: 456.09  E-value: 1.01e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  82 PVENGPVPPKREFRAVWIATVDnidwpskkgLPVADQQREIIEMFDQQQQMGINAVVVQVRSAADAFYAKSSEPWSEWLT 161
Cdd:COG1649    21 PAPAAAPSPKREIRGVWLTTVD---------LSVLKQKAELIEILDRLKELGFNAVFFQVRPAGDALYPSAIEPWSEYLT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 162 GQQGLAPApfYDPLEFMIEQAHQRGMEFHAWFNLDRATFS-KVSSVAPTNIIYRKPDWVFTY--GGRKLFNLGMPAVRSY 238
Cdd:COG1649    92 GTQGKDPG--YDPLAFAIEEAHKRGLEVHAWFNPYRAAPNtDVSPLAPSHIAKKHPEWLTKYrdGGKLWLNPGHPEVRDF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 239 IAGIVANVVREYDVDGIHFDDYFYPFgvtgQALRDD---NIYQA-----NFNGMKKEDWRRDNINKLIAELRDSIRSNKP 310
Cdd:COG1649   170 ILDLVLEVVTRYDVDGIHFDDYFYPS----EFGYDDatyALYGQetgfdNPKDLSWADWRRDNVNRFVRRLYQAIKAVKP 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 311 WVKFGISPFGIWKNKSndaegsatTGGQSYYDLYADTRKWVRDGLIDYIVPQVYFSTEFSRVPYKTLVEWWTRNCG--KC 388
Cdd:COG1649   246 DVKFSISPFGIWRNSP--------TGLFAYDDLYQDWRTWVKEGWVDYIVPQLYWPDGNSAADFEKLLDWWAQQAKgrKV 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 389 HLYIGHGAYRVGhgserdpgwgrATEFPDQMRYNRQQRAVQGSIFFSAKSLKTNPlAIRDSLQTNFYRYPALVPPMTWLD 468
Cdd:COG1649   318 PLYIGIGLYKVP-----------PEEILRQIQLNRDLPGVAGVVFFSYESLWNNP-GLADALRQGLYRTPALVPAMPWLD 385

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1805985841 469 SIpplsprdlkaadtaeGVELFWQQPAEAEDGDGASYYIVYRFE 512
Cdd:COG1649   386 GT---------------GVLLSWQAPAEELAEALARLAVVPSSA 414
GHL10 pfam02638
Glycosyl hydrolase-like 10; This is family of bacterial glycosyl-hydrolase-like proteins ...
 93-409 3.75e-75

Glycosyl hydrolase-like 10; This is family of bacterial glycosyl-hydrolase-like proteins falling into the family GHL10 as described above,.


Pssm-ID: 251441 [Multi-domain]  Cd Length: 311  Bit Score: 241.35  E-value: 3.75e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  93 EFRAVWIATVDNIDWPSKkglpvaDQQREIIEMFDQQQqmgINAVVVQVRSAADAFYAKSSEPWSEWLTGQQGLAPApfY 172
Cdd:pfam02638   1 EIRGVWLTNVDSNDWPDP------VQLQEAIALLDDLN---FNTVYPQVWNDGHALYPSAVAPWSGLKTGEKGGDPG--Y 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 173 DPLEFMIEQAHQRGMEFHAWFNLDRAT--FSKVSSVAPTNIIYRKPDWVFTY----GGRKLFNLGMPAVRSYIAGIVANV 246
Cdd:pfam02638  70 DPLAFMIDEAHKRNLRVHPWFEFGFNApaLSDLVKAHPAWLTTQHRDWTITSeggtGPRVWLNPGHPEVQDFITALVVDV 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 247 VREYDVDGIHFDDYFYPFGVTGQALRDDNIYQ--------ANFNGMKKEDWRRDNINKLIAELRDSIRSNKPWVKFGISP 318
Cdd:pfam02638 150 VRRYDVDGVQFDDHFYYPYSFGYDPITVALYRqetkqepfSNPEDDLNTDWRRDKISQLVQQLNPTIKAAKPNVTFSISP 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 319 FGIWKnksndaegsattggQSYYDLYADTRKWVRDGLIDYIVPQVYFSTE-FSRVPYKTLVEWWTRNC--GKCHLYIGHG 395
Cdd:pfam02638 230 AGVWN--------------FAYNCFLADWRTWIEAGVIDEIAPQVYREKQaAFTAEYQVLAVWWSKQVipTVVGILIGLA 295

                         330
                  ....*....|....
gi 1805985841 396 AYRVGHGSERDPGW 409
Cdd:pfam02638 296 NYKIPSPIKQDPQW 309
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
468-563 9.11e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 58.09  E-value: 9.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 468 DSIPPLSPRDLKA-ADTAEGVELFWQQPaeaeDGDGASYYIVYRFEGIRSRLRLddprcivaqcVGE--STTRFVDKTTD 544
Cdd:COG3401   323 DLTPPAAPSGLTAtAVGSSSITLSWTAS----SDADVTGYNVYRSTSGGGTYTK----------IAEtvTTTSYTDTGLT 388

                          90
                  ....*....|....*....
gi 1805985841 545 PKKKYVYAVTAVDRLHNES 563
Cdd:COG3401   389 PGTTYYYKVTAVDAAGNES 407
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
469-563 6.07e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 55.39  E-value: 6.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 469 SIPPLSPRDLKA-ADTAEGVELFWQqpaeAEDGDGASYYIVYRfegirsRLRLDDPRCIVAQcvgESTTRFVDKTTDPKK 547
Cdd:COG3401   230 TTPPSAPTGLTAtADTPGSVTLSWD----PVTESDATGYRVYR------SNSGDGPFTKVAT---VTTTSYTDTGLTNGT 296

                          90
                  ....*....|....*.
gi 1805985841 548 KYVYAVTAVDRLHNES 563
Cdd:COG3401   297 TYYYRVTAVDAAGNES 312
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 21-109 7.69e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 55.20  E-value: 7.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  21 RPEPVVTKRPPVAARRPPisKPAPPKPTAAKPEPAKPTPATAIVPANK---PDTIEAESVADQMPVENGPVPPKREFRAV 97
Cdd:PRK14950  380 RPTPAPSTRPKAAAAANI--PPKEPVRETATPPPVPPRPVAPPVPHTPesaPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

                          90
                  ....*....|....*..
gi 1805985841  98 wIATVDNID-----WPS 109
Cdd:PRK14950  458 -IADGDVLEqleaiWKQ 473
Melibiase pfam02065
Melibiase; Glycoside hydrolase families GH27, GH31 and GH36 form the glycoside hydrolase clan ...
 167-258 1.24e-07

Melibiase; Glycoside hydrolase families GH27, GH31 and GH36 form the glycoside hydrolase clan GH-D. Glycoside hydrolase family 36 can be split into 11 families, GH36A to GH36K. This family includes enzymes from GH36A-B and GH36D-K and from GH27.


Pssm-ID: 307952  Cd Length: 347  Bit Score: 53.94  E-value: 1.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 167 APAPFYDPLEFMIEQAHQRGMEFHAWFNLDratfskvsSVAPTNIIYRK-PDWVFTYGGRK--------LFNLGMPAVRS 237
Cdd:pfam02065  98 NPRKFPNGLDPLAKQVHALGMQFGLWFEPE--------MVNPNSDLYRQhPDWVLHVPGRPrtegrnqlVLDLSRPDVVD 169

                          90       100
                  ....*....|....*....|.
gi 1805985841 238 YIAGIVANVVREYDVDGIHFD 258
Cdd:pfam02065 170 YIIETLDNLLQEAPIDYVKWD 190
GH36 cd14791
glycosyl hydrolase family 36 (GH36); GH36 enzymes occur in prokaryotes, eukaryotes, and ...
 121-258 1.41e-07

glycosyl hydrolase family 36 (GH36); GH36 enzymes occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-galactosidase, alpha-N-acetylgalactosaminidase, stachyose synthase, and raffinose synthase. All GH36 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH36 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.


Pssm-ID: 269892 [Multi-domain]  Cd Length: 299  Bit Score: 53.38  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 121 EIIEMFDQQQQMGINAVVVQvrsaaDAFYAKSSEPWS---EWLTGQQGlapapFYDPLEFMIEQAHQRGMEFHAWFnldr 197
Cdd:cd14791    20 KLLELADAAAELGVELFVID-----DGWFGARNDDYAglgDWLVDPEK-----FPDGLKALADRIHALGMKFGLWL---- 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841 198 ATFSkvssVAPTNIIYRK-PDWVFTYGGRKL--------FNLGMPAVRSYIAGIVANVVREYDVDGIHFD 258
Cdd:cd14791    86 EPEM----VGPDSELYREhPDWLLKDPGGPPvtgrnqyvLDLSNPEVRDYLREVIDRLLREWGIDYLKWD 151
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
24-87 4.00e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 4.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1805985841  24 PVVTKRPPVAARRPPISKPAPPKPT-AAKPEPAKPTPATAIVPANKPDTIEAESVADQMPVENGP 87
Cdd:PRK12323  381 PVAQPAPAAAAPAAAAPAPAAPPAApAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPG 445
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 22-96 6.33e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 6.33e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1805985841  22 PEPVVTKRPPVAARRPPISKPAPPKPTAAKPEPAKPTPATAIVPANKPDTIEAESVADQMPVENGPVPPKREFRA 96
Cdd:PRK14951  403 PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAP 477
PRK10905 PRK10905
cell division protein DamX; Validated
 20-91 7.36e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.85  E-value: 7.36e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1805985841  20 RRPEP----VVTKRPPVAARRPPISKPAPPK--PTAAKPEPAKpTPATAIVPANKPdTIEAESVADQMPVENGPVPPK 91
Cdd:PRK10905  154 TRPARkqavIEPKKPQATAKTEPKPVAQTPKrtEPAAPVASTK-APAATSTPAPKE-TATTAPVQTASPAQTTATPAA 229
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 20-140 7.39e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 7.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  20 RRPEPVVtkrPPVAARRPPISKPAPPKPTAAkPEPAKPTPATAIVPANKPDTIEAESVADQMPvengPVPPKREFRAVWI 99
Cdd:PRK14951  393 PVAQAAA---APAPAAAPAAAASAPAAPPAA-APPAPVAAPAAAAPAAAPAAAPAAVALAPAP----PAQAAPETVAIPV 464

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1805985841 100 ATVDNIDWPSKKGLPVADQQ---REIIEMFD------QQ--QQMGINAVVVQ 140
Cdd:PRK14951  465 RVAPEPAVASAAPAPAAAPAaarLTPTEEGDvwhatvQQlaAAEAITALARE 516
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 30-149 9.29e-04

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 39.76  E-value: 9.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  30 PPVAARRPPISKPAPPKPTA-AKPEPAKPTPATAIVPANKPDTIEAESVADQMPVENGPVPPKREFrAVWIATVDNidwp 108
Cdd:COG3147     1 PAEEAAAAPAAAAAPAAPAAaAAPAPAAAAAAAAPKPAAKPAAPKPAAAAAAAPAAKAAAPAGGGW-VVQLGAFSN---- 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1805985841 109 skkglpvADQQREIIemfDQQQQMGINAVVVQVRSAADAFY 149
Cdd:COG3147    76 -------EDNAKELV---AKLRAAGYPAYTEPVTTGGGTLY 106
PRK11633 PRK11633
cell division protein DedD; Provisional
 21-71 2.09e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.99  E-value: 2.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1805985841  21 RPEPVVTKRPPVAARRP-PISKPaPPKPTAAKPEPAKPTPATAIVPANKPDT 71
Cdd:PRK11633   93 PNTPVEPEPAPVEPPKPkPVEKP-KPKPKPQQKVEAPPAPKPEPKPVVEEKA 143
PHA03247 PHA03247
large tegument protein UL36; Provisional
 20-90 2.10e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 2.10e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1805985841   20 RRPEPVVTKRPPVAARRPP---ISKPAPPKPTAAKPEPA-----KPTPATAIVPANKPDTIEAESVADQMPVENGPVPP 90
Cdd:PHA03247  2864 RRPPSRSPAAKPAAPARPPvrrLARPAVSRSTESFALPPdqperPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
17-69 2.23e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.56  E-value: 2.23e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1805985841  17 DGCRRPE----PVVTKRPPVAARRPPiSKPAPPKPTAAKPEPAKPTPATAIVPANKP 69
Cdd:PRK12373  218 DTVKRIDgtevPLLAPWQGDAAPVPP-SEAARPKSADAETNAALKTPATAPKAAAKN 273
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 23-90 2.25e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.95  E-value: 2.25e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1805985841  23 EPVVTKRPPVAArrppiSKPAPPKPTAAKPEPAKPTPATAIVPANKPdtiEAESVADQMPVENGPVPP 90
Cdd:PRK14950  357 EALLVPVPAPQP-----AKPTAAAPSPVRPTPAPSTRPKAAAAANIP---PKEPVRETATPPPVPPRP 416
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 20-79 2.67e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 40.50  E-value: 2.67e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805985841  20 RRPEPVVTKRPPvAARRPPISKPAPPKPTAAKPEPAKPTPATAIVPANKPDTIEAESVAD 79
Cdd:PRK14965  390 GAPTPAAPAAPP-PAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGD 448
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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