NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1802535440|gb|QHQ86697|]
View 

50S ribosomal protein L30 [Elizabethkingia miricola]

Protein Classification

uL30 family ribosomal protein( domain architecture ID 10012504)

uL30 family ribosomal protein, such as 50S ribosomal protein L30, which binds the 23SrRNA as well as the 5S rRNA

Gene Ontology:  GO:0006412|GO:0015934|GO:0003735
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-58 3.76e-25

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 441446  Cd Length: 58  Bit Score: 87.02  E-value: 3.76e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1802535440  1 MAKIAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQE 58
Cdd:COG1841    1 MKKLKVTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVEE 58
 
Name Accession Description Interval E-value
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-58 3.76e-25

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 87.02  E-value: 3.76e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1802535440  1 MAKIAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQE 58
Cdd:COG1841    1 MKKLKVTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVEE 58
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 1-58 7.56e-25

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 86.31  E-value: 7.56e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1802535440  1 MAKIAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQE 58
Cdd:PRK05611   1 MKTLKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEE 58
Ribosomal_L30 cd01658
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 4-57 2.69e-22

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100100  Cd Length: 54  Bit Score: 79.77  E-value: 2.69e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1802535440  4 IAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQ 57
Cdd:cd01658    1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKVE 54
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 4-58 3.82e-18

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 69.26  E-value: 3.82e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1802535440  4 IAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQE 58
Cdd:TIGR01308  1 IKVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVEE 55
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 4-54 6.63e-17

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 66.18  E-value: 6.63e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1802535440  4 IAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLV 54
Cdd:pfam00327  1 LKVTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
 
Name Accession Description Interval E-value
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-58 3.76e-25

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 87.02  E-value: 3.76e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1802535440  1 MAKIAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQE 58
Cdd:COG1841    1 MKKLKVTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVEE 58
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 1-58 7.56e-25

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 86.31  E-value: 7.56e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1802535440  1 MAKIAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQE 58
Cdd:PRK05611   1 MKTLKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEE 58
Ribosomal_L30 cd01658
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 4-57 2.69e-22

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100100  Cd Length: 54  Bit Score: 79.77  E-value: 2.69e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1802535440  4 IAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQ 57
Cdd:cd01658    1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKVE 54
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 4-58 3.82e-18

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 69.26  E-value: 3.82e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1802535440  4 IAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQE 58
Cdd:TIGR01308  1 IKVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVEE 55
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 5-57 3.87e-18

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 69.36  E-value: 3.87e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1802535440  5 AIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLVEVQ 57
Cdd:cd00355    1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 4-54 6.63e-17

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 66.18  E-value: 6.63e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1802535440  4 IAIKQVRSAIGRTKNQKLTLEALGLKKLQQVVEHEATPSILGMVATVSHLV 54
Cdd:pfam00327  1 LKVTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH