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Conserved domains on  [gi|1799373467|gb|QHL33290|]
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ABC transporter permease subunit [Staphylococcus aureus]

Protein Classification

sugar ABC transporter permease( domain architecture ID 15767475)

sugar ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of sugar substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0043190|GO:0016020|GO:0008643
PubMed:  25750732|24638992|16375896|17723295|1970642
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
110-413 2.90e-74

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 233.87  E-value: 2.90e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 110 PKARMVATWDKTFPYLLISPGTFLLIFVVVFPLIFMFGVAFTNYNLYNAPPrhtlEWVGLDNFKTLFTigvwRKTFFSVI 189
Cdd:COG1175     7 AAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPP----EFVGLDNYARLFT----DPRFWNAL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 190 TWTLVWTLVATTLQIALGLFLAIIVNHPVvKGKKFIRTVLILPWAVPSFVTILIFVALFNDEFGAINNdILQPLLGVAPA 269
Cdd:COG1175    79 GNTLLFTVVSVPLQLVLGLLLALLLNRKL-RGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNA-LLGALGLEPIN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 270 WLSDPFWAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNN 349
Cdd:COG1175   157 WLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799373467 350 FNLIYLFNKGGPpvsgqnAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFRRT 413
Cdd:COG1175   237 FDLVYVLTGGGP------GNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLL 294
DUF5683 super family cl40938
Family of unknown function (DUF5683); This is a domain of unknown function found mostly in ...
 3-102 5.77e-04

Family of unknown function (DUF5683); This is a domain of unknown function found mostly in bacteria.


The actual alignment was detected with superfamily member pfam18935:

Pssm-ID: 465918  Cd Length: 151  Bit Score: 40.16  E-value: 5.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467   3 KRNPKLAALLS-VIPGLGQFYNKRPIK--------GTIFFiffisfisvFYSFLNIGF------WGLFTLGTVPKLDDSR 67
Cdd:pfam18935   2 PPSPRKAALYSaILPGLGQIYNRKYWKvpivygglGGLVY---------FIIWNNRNYkryrdaYKFRPAGDADPDDPGY 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1799373467  68 V-LLAQGIISI---------LLVAFAIMLYVINILDAYRNAE--RFN 102
Cdd:pfam18935  73 PnLSTDGLKRAkdfyrrnrdLSILVTVGVYALNIIDAYVDAHlkQFD 119
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
110-413 2.90e-74

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 233.87  E-value: 2.90e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 110 PKARMVATWDKTFPYLLISPGTFLLIFVVVFPLIFMFGVAFTNYNLYNAPPrhtlEWVGLDNFKTLFTigvwRKTFFSVI 189
Cdd:COG1175     7 AAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPP----EFVGLDNYARLFT----DPRFWNAL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 190 TWTLVWTLVATTLQIALGLFLAIIVNHPVvKGKKFIRTVLILPWAVPSFVTILIFVALFNDEFGAINNdILQPLLGVAPA 269
Cdd:COG1175    79 GNTLLFTVVSVPLQLVLGLLLALLLNRKL-RGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNA-LLGALGLEPIN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 270 WLSDPFWAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNN 349
Cdd:COG1175   157 WLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799373467 350 FNLIYLFNKGGPpvsgqnAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFRRT 413
Cdd:COG1175   237 FDLVYVLTGGGP------GNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLL 294
malF PRK10999
maltose ABC transporter permease MalF;
166-413 8.17e-68

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 224.07  E-value: 8.17e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 166 WVGLDNFKTLFTIGVWRKTFFSVITWTLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFV 245
Cdd:PRK10999  264 TIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFK 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 246 ALFNDEFGAINnDILQPLLGVAPAWLSDPFWAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRN 325
Cdd:PRK10999  344 GLFNQSFGEIN-MMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFK 422

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 326 ITFPHVIYATAPLLIMQYAGNFNNFNLIYLFNKGGPPVSGQN--AGSTDILISWVYNLTFE---FNNFNMGAVVSLIIGF 400
Cdd:PRK10999  423 ITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTtpAGYTDLLVSYTYRIAFEgggGQDFGLAAAIATLIFL 502

                         250
                  ....*....|...
gi 1799373467 401 IVAIVAFIQFRRT 413
Cdd:PRK10999  503 LVGALAILNLKAT 515
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 132-408 8.57e-16

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 79.34  E-value: 8.57e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 132 FLLIFVVVfPLIFMFGVAFTNYNLynapprhtlEWVGLDNFKTLFTigvwRKTFFSVITWTLVWTLVATTLQIALGLFLA 211
Cdd:TIGR03262  13 ALLLFLLL-PLLALLTKSVYDSDG---------DFIGLANFAEYFA----TPGLLQSLGNSLTVSAIVTAIVVPLAFAFA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 212 IIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNdefgaiNNDILQPLLGVAPawlsdpFWAKVALIGIQVWLGFP 291
Cdd:TIGR03262  79 YALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG------NQGLLKGLLGGFS------IYGFWGIVIGEVFYTFP 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 292 FVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNFnliylfnkGGPPVSGqnaGST 371
Cdd:TIGR03262 147 HALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF--------GVPKVIG---GDY 215

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1799373467 372 DILISWVYNLTFEFNNFNMGAVVSLIIgFIVAIVAFI 408
Cdd:TIGR03262 216 NVLATDIYKQVIGQQNFPMGAVVGVLL-LLPALLAFG 251
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 189-402 7.17e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 7.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 189 ITWTLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFndefgainndilqpllGVAP 268
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLL 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 269 AWLSDPFWAKVALIGIQVWLgFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFN 348
Cdd:cd06261    65 GWGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1799373467 349 NFNLIYLFnkggppvsGQNAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIV 402
Cdd:cd06261   144 EFALVSFL--------GGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 203-414 3.29e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 67.71  E-value: 3.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 203 QIALGLFLAiivNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFndefgainndilqpllgvapaWLSDPFWAKVALI 282
Cdd:pfam00528   1 GIPLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------------ILSILGHGILPAI 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 283 GIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNFNLIYLFNkggpp 362
Cdd:pfam00528  57 ILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG----- 131

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1799373467 363 vSGQNAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFRRTS 414
Cdd:pfam00528 132 -SWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
DUF5683 pfam18935
Family of unknown function (DUF5683); This is a domain of unknown function found mostly in ...
 3-102 5.77e-04

Family of unknown function (DUF5683); This is a domain of unknown function found mostly in bacteria.


Pssm-ID: 465918  Cd Length: 151  Bit Score: 40.16  E-value: 5.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467   3 KRNPKLAALLS-VIPGLGQFYNKRPIK--------GTIFFiffisfisvFYSFLNIGF------WGLFTLGTVPKLDDSR 67
Cdd:pfam18935   2 PPSPRKAALYSaILPGLGQIYNRKYWKvpivygglGGLVY---------FIIWNNRNYkryrdaYKFRPAGDADPDDPGY 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1799373467  68 V-LLAQGIISI---------LLVAFAIMLYVINILDAYRNAE--RFN 102
Cdd:pfam18935  73 PnLSTDGLKRAkdfyrrnrdLSILVTVGVYALNIIDAYVDAHlkQFD 119
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
110-413 2.90e-74

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 233.87  E-value: 2.90e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 110 PKARMVATWDKTFPYLLISPGTFLLIFVVVFPLIFMFGVAFTNYNLYNAPPrhtlEWVGLDNFKTLFTigvwRKTFFSVI 189
Cdd:COG1175     7 AAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPP----EFVGLDNYARLFT----DPRFWNAL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 190 TWTLVWTLVATTLQIALGLFLAIIVNHPVvKGKKFIRTVLILPWAVPSFVTILIFVALFNDEFGAINNdILQPLLGVAPA 269
Cdd:COG1175    79 GNTLLFTVVSVPLQLVLGLLLALLLNRKL-RGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNA-LLGALGLEPIN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 270 WLSDPFWAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNN 349
Cdd:COG1175   157 WLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799373467 350 FNLIYLFNKGGPpvsgqnAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFRRT 413
Cdd:COG1175   237 FDLVYVLTGGGP------GNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLL 294
malF PRK10999
maltose ABC transporter permease MalF;
166-413 8.17e-68

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 224.07  E-value: 8.17e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 166 WVGLDNFKTLFTIGVWRKTFFSVITWTLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFV 245
Cdd:PRK10999  264 TIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFK 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 246 ALFNDEFGAINnDILQPLLGVAPAWLSDPFWAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRN 325
Cdd:PRK10999  344 GLFNQSFGEIN-MMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFK 422

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 326 ITFPHVIYATAPLLIMQYAGNFNNFNLIYLFNKGGPPVSGQN--AGSTDILISWVYNLTFE---FNNFNMGAVVSLIIGF 400
Cdd:PRK10999  423 ITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTtpAGYTDLLVSYTYRIAFEgggGQDFGLAAAIATLIFL 502

                         250
                  ....*....|...
gi 1799373467 401 IVAIVAFIQFRRT 413
Cdd:PRK10999  503 LVGALAILNLKAT 515
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 124-406 8.78e-30

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 117.50  E-value: 8.78e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 124 YLLISPGtflLIFVVVFPLIFMFGV--AFTNYNlynapPRHTL---EWVGLDNFKTLFTigvwrktffSVITWTLVW-TL 197
Cdd:COG4209    30 YLMLLPG---LIYLLIFSYLPMYGIviAFKDYN-----PFKGIfgsPWVGLKNFKFLFS---------SPDFWRVLRnTL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 198 VATTLQIALGLF----LAIIVNH-PVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDEFGAINNdILQpLLGVAP-AWL 271
Cdd:COG4209    93 LISLLKLVFGFPlpiiLALLLNElRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQ-LLR-ALGGEPiNFL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 272 SDPFWAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQyAGNF--NN 349
Cdd:COG4209   171 TEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILN-IGNIlnVG 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 350 FNLIYLFNkggppvSGQNAGSTDILISWVYNLTFEFNNFNMGAVVSL---IIGFIVAIVA 406
Cdd:COG4209   250 FEQIYLLY------NPLNYSTSDVIDTYVYRIGLQNGDYSYATAVGLfksVVGLILVLIA 303
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
116-411 7.55e-24

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 103.70  E-value: 7.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 116 ATWDKTFPYLLISPGTFLLIFVVVFPLIFMFGVAFTnynlynapprhtlewVGLDNFKTLFtigvWRKTFFSVITWTLVW 195
Cdd:COG1178     2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFT---------------DGLANFWALL----SDPYLWRALGNTLLL 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 196 TLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNdefgaiNNDILQPLLGVAPAWLSDPF 275
Cdd:COG1178    63 ALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFG------PNGLLNTLLRALFGLEPPDI 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 276 WAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNFNLIYL 355
Cdd:COG1178   137 YGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLV 216

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1799373467 356 FnkggppvsgqnAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFR 411
Cdd:COG1178   217 L-----------GGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERR 261
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 120-421 2.87e-17

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 81.73  E-value: 2.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 120 KTFPYLLISPGTFLLIFVVVFPLIFMFGVAFTNYNLYNAPPRHtlewVGLDNFKTLFTigvwRKTFFSVITWTLVWTLVA 199
Cdd:COG1176     8 RLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPG----FTLENYARLFT----DPLYLKVLLRTLWIALLT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 200 TTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDEfGAINNdILQpLLGVAPAWLSDPFWAKV 279
Cdd:COG1176    80 TLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNS-LLL-ALGLIDEPLRLLYTEFA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 280 ALIGIqVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHV---IYATAPLLIMQYAGNFNNFNLIylf 356
Cdd:COG1176   157 VVIGL-VYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSlpgIIAGSLLVFIPALGAFVTPALL--- 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799373467 357 nkGGPpvsgqnagSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFRRTSTFKDEGG 421
Cdd:COG1176   233 --GGG--------KVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 132-408 8.57e-16

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 79.34  E-value: 8.57e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 132 FLLIFVVVfPLIFMFGVAFTNYNLynapprhtlEWVGLDNFKTLFTigvwRKTFFSVITWTLVWTLVATTLQIALGLFLA 211
Cdd:TIGR03262  13 ALLLFLLL-PLLALLTKSVYDSDG---------DFIGLANFAEYFA----TPGLLQSLGNSLTVSAIVTAIVVPLAFAFA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 212 IIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNdefgaiNNDILQPLLGVAPawlsdpFWAKVALIGIQVWLGFP 291
Cdd:TIGR03262  79 YALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG------NQGLLKGLLGGFS------IYGFWGIVIGEVFYTFP 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 292 FVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNFnliylfnkGGPPVSGqnaGST 371
Cdd:TIGR03262 147 HALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF--------GVPKVIG---GDY 215

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1799373467 372 DILISWVYNLTFEFNNFNMGAVVSLIIgFIVAIVAFI 408
Cdd:TIGR03262 216 NVLATDIYKQVIGQQNFPMGAVVGVLL-LLPALLAFG 251
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
165-411 1.98e-15

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 76.02  E-value: 1.98e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 165 EWVGLDNFKTLFTIGVWRKTFFSvitwTLVWTLVATTLQIALGLFLAIIVNHpVVKGKKFIRTVLILPWAVPSFVTILIF 244
Cdd:PRK10561   37 QFVGLDNFVALFHDSYYLDSFWT----TIKFSTLVTVSGLLVSLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLW 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 245 VALFNDEFGAINNDILQplLGVAPAWLSDPFWAKVALIGIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFR 324
Cdd:PRK10561  112 IFLFNPGRGLITHFLAE--FGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFF 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 325 NITFPHVIYATAPLLIMqyagnfnnfNLIYLFNKGGPPVSGQNAG----STDILISWVYNLTFEFNNFNMGAVVSLIIGF 400
Cdd:PRK10561  190 KLALPLIAPVSFFLLVV---------NLVYAFFDTFPVIDAATSGgpvqATTTLIYKIYREGFTGLDLSSSAAQSVVLMF 260

                         250
                  ....*....|.
gi 1799373467 401 IVAIVAFIQFR 411
Cdd:PRK10561  261 LVIVLTVVQFR 271
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 189-402 7.17e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 7.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 189 ITWTLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFndefgainndilqpllGVAP 268
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLL 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 269 AWLSDPFWAKVALIGIQVWLgFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFN 348
Cdd:cd06261    65 GWGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1799373467 349 NFNLIYLFnkggppvsGQNAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIV 402
Cdd:cd06261   144 EFALVSFL--------GGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 203-414 3.29e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 67.71  E-value: 3.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 203 QIALGLFLAiivNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFndefgainndilqpllgvapaWLSDPFWAKVALI 282
Cdd:pfam00528   1 GIPLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------------ILSILGHGILPAI 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 283 GIQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNFNLIYLFNkggpp 362
Cdd:pfam00528  57 ILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG----- 131

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1799373467 363 vSGQNAGSTDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFRRTS 414
Cdd:pfam00528 132 -SWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 131-412 3.23e-12

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 66.29  E-value: 3.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 131 TFLLIFVVVFPLIFMFGVAFTNYNLYNAPPRH-TLEWvgldnFKTLFTIGVWRKTFFsvitWTLVWTLVATTLQIALGLF 209
Cdd:COG1177    13 LALVLLFLYLPILVLVLYSFNDSWFLTFPPEGfTLRW-----YAELFSDPRLLDALL----NSLLIALLSTLLATVLGTP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 210 LAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNdefgainndilqpLLGVAPAWLSdpfwakvaLIGIQVWLG 289
Cdd:COG1177    84 AALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFS-------------ALGLSGGLWG--------LILAHVVFT 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 290 FPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNFNLIYLfnkggppVSGqnaG 369
Cdd:COG1177   143 LPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLF-------LAG---P 212

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1799373467 370 STDILISWVYNLTFEFNNFNMGAVVSLIIGFIVAIVAFIQFRR 412
Cdd:COG1177   213 GVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLR 255
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 132-350 1.20e-09

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 58.95  E-value: 1.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 132 FLLIFVVVFPLIFMFGVAF-TNYNLYNAPPRHTLEWVGLDNFKTLFT-IGVWRKTFFSVITwtlvwTLVATTLQIALGLF 209
Cdd:COG0395    22 ILLALLFLFPLYWMVVTSFkPPAEIFSGPPSLLPSEFTLENYRAAFTdGPFGRYLLNSLIV-----AVVSTVLSLLLSSL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 210 LAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDefgainndilqplLGvapawLSDPFWAkvaLIGIQVWLG 289
Cdd:COG0395    97 AAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQ-------------LG-----LLNTYWG---LILPYLAFG 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1799373467 290 FPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNF 350
Cdd:COG0395   156 LPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDF 216
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 114-331 2.48e-09

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 57.84  E-value: 2.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 114 MVATWDKTFPYLLISPGTFLLIFVVVfPLIFMFGVAFTnynlynapprhtlewVGLDNFKTLFTigvwRKTFFSVITWTL 193
Cdd:COG0555     1 MSRRVLPGFGLTLGLTLLYLSLIVLL-PLAALVLKAAG---------------LGWAEFWAVLT----SPRVLAALKLSL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 194 VWTLVATTLQIALGLFLAII---VNHPvvkGKKFIRTVLILPWAVPSFVTILIFVALFNDefgainndilQPLLGvapAW 270
Cdd:COG0555    61 GTALIAALINLVFGLPLAWVlvrYRFP---GKRLVDALVDLPFALPTAVAGIALLLLFGP----------NGWLG---QL 124

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799373467 271 LsDPFWAKVA--LIGI---QVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHV 331
Cdd:COG0555   125 L-APLGIKVAftPLGIvlaQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLL 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
75-413 4.44e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 58.25  E-value: 4.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467  75 ISILLVAFAIMLYVInildaYRNAERFNRNEEIKDPKARMVATWDKTFPYLLISPGTFLLIFVVVFPLIFMFGVAFTNYN 154
Cdd:COG1178   244 LALVLLLLVLLLLLL-----ERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKAL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 155 LYNapprhtlewVGLDNFKTLFtigvWRKTFFSVITWTLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWA 234
Cdd:COG1178   319 DDN---------LTLDNYRFVL----LDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYA 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 235 VPSFVTILIFVALFNdefgainndilqpllGVAPAWLSDPFWAkvaLIGIQVWLGFPFVFALFTGVLQSISSDWYEAADM 314
Cdd:COG1178   386 VPGIVLGLGLLLLFN---------------RPLPLLLYGTLAI---LVLAYVVRFLPFALRSLEAALAQIDPSLEEAARS 447

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 315 DGASSWQKFRNITFPHVIYATAPLLIMQYAGNFNNFNLIYLFnkgGPPvsgqnagSTDILISWVYNLTfEFNNFNMGAVV 394
Cdd:COG1178   448 LGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLL---RPP-------GFETLAVLIYQLA-SSGRYGEAAAL 516

                         330
                  ....*....|....*....
gi 1799373467 395 SLIIGFIVAIVAFIQFRRT 413
Cdd:COG1178   517 ALLLVLVSLLPVLLLERLL 535
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
192-347 3.87e-07

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 51.29  E-value: 3.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 192 TLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDEfgainndilqpllGVAPAWL 271
Cdd:PRK10971   63 TLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN-------------GWYGEWL 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 272 SDpFWAKVAL--IGIQVWLGF---PFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHViyatAPLLIMQYAGN 346
Cdd:PRK10971  130 AK-FDIKVTYtwLGIAVAMAFtsiPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPEL----SPALLAGVALS 204


                  .
gi 1799373467 347 F 347
Cdd:PRK10971  205 F 205
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 185-334 5.10e-06

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 47.73  E-value: 5.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 185 FFSVITWTLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDE------FGAINND 258
Cdd:TIGR00969  58 AVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNgwlgswLASFGIQ 137

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799373467 259 ILQPLLGVAPAwlsdpfwakvaligiQVWLGFPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYA 334
Cdd:TIGR00969 138 IIFTWPGMALA---------------MIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWA 198
cysT CHL00187
sulfate transport protein; Provisional
 180-334 5.26e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 47.32  E-value: 5.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 180 VWRKTFFSVITW----TLVWTLVATTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDefgai 255
Cdd:CHL00187   44 FLQKATEPIALSayslTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGD----- 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 256 nNDILQPLLgvapawlsDPFWAKVALIGIQVWLG-----FPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPH 330
Cdd:CHL00187  119 -NGWIGHLL--------SHLGIQIVFTKLGVLLAmifvsFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPP 189


                  ....
gi 1799373467 331 VIYA 334
Cdd:CHL00187  190 LIPA 193
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
124-334 3.51e-05

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 45.13  E-value: 3.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 124 YLLISPGTFLLIFVVVFPLIFMFGVAFTNynlynapprhtlewvGLDnfktlftiGVWR----KTFFSVITWTLVWTLVA 199
Cdd:PRK11602   20 WFLIGIGMLVSAFILVVPMIYIFVQAFSK---------------GLM--------PVLQnladPDMLHAIWLTVLIALIA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 200 TTLQIALGLFLAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDEfgainndilqpllGVAPAWLsDPF---- 275
Cdd:PRK11602   77 VPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSN-------------GPLGGWL-DEHnlql 142

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799373467 276 ---WAKVALIGIQVWLgfPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFPHVIYA 334
Cdd:PRK11602  143 mfsWPGMVLVTIFVTC--PFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWA 202
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 133-329 6.36e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 44.37  E-value: 6.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 133 LLIFVVVFPLIFMFGVAFTNYN-LY--NAPPRHtlewVGLDNFKTLFTigvwRKTFFSVITWTLVWTLVATTLQIALGLF 209
Cdd:COG3833    24 ILAIIALFPILWVVSASFNPGGsLYssSLIPEN----FTLENYKKLFT----ETPFLRWFLNSLIVAVVTAIISVFLAAL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467 210 LAIIVNHPVVKGKKFIRTVLILPWAVPSFVTILIFVALFNDeFGAINNdilqpllgvapawlsdpfwaKVALIGIQVWLG 289
Cdd:COG3833    96 AAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSA-LGLLNT--------------------LLGLILVYLGGA 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1799373467 290 FPFVFALFTGVLQSISSDWYEAADMDGASSWQKFRNITFP 329
Cdd:COG3833   155 IPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILP 194
DUF5683 pfam18935
Family of unknown function (DUF5683); This is a domain of unknown function found mostly in ...
 3-102 5.77e-04

Family of unknown function (DUF5683); This is a domain of unknown function found mostly in bacteria.


Pssm-ID: 465918  Cd Length: 151  Bit Score: 40.16  E-value: 5.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799373467   3 KRNPKLAALLS-VIPGLGQFYNKRPIK--------GTIFFiffisfisvFYSFLNIGF------WGLFTLGTVPKLDDSR 67
Cdd:pfam18935   2 PPSPRKAALYSaILPGLGQIYNRKYWKvpivygglGGLVY---------FIIWNNRNYkryrdaYKFRPAGDADPDDPGY 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1799373467  68 V-LLAQGIISI---------LLVAFAIMLYVINILDAYRNAE--RFN 102
Cdd:pfam18935  73 PnLSTDGLKRAkdfyrrnrdLSILVTVGVYALNIIDAYVDAHlkQFD 119
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 262-331 1.82e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.75  E-value: 1.82e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1799373467 262 PLLGVAP---AWLSDPFWAKVALIGIQVWlgFPFVFALFTGVlQSISSDWYEAADMDGASSWQKFRNITFPHV 331
Cdd:COG0600   109 PPLALAPlliLWFGIGEASKIFVIFLGAF--FPILLNTAAGV-RSVDPELLELARSLGASRWQILRKVVLPAA 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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