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Conserved domains on  [gi|1789829750|gb|QHB63509|]
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ABC transporter permease subunit [Bifidobacterium adolescentis]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
24-308 9.16e-85

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 256.99  E-value: 9.16e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  24 SKRKVDPAFYWMTIPAMILVCIFLYLPFLQGAMYSFTNSQGYG-DYKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLG 102
Cdd:COG1175    12 RRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 103 TNILGMFLAVLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALH------IDWLStsmisNPDLAWF 176
Cdd:COG1175    92 QLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGalglepINWLG-----DPSLALP 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 177 PIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKG 256
Cdd:COG1175   167 AVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGG 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1789829750 257 GPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 308
Cdd:COG1175   247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
24-308 9.16e-85

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 256.99  E-value: 9.16e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  24 SKRKVDPAFYWMTIPAMILVCIFLYLPFLQGAMYSFTNSQGYG-DYKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLG 102
Cdd:COG1175    12 RRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 103 TNILGMFLAVLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALH------IDWLStsmisNPDLAWF 176
Cdd:COG1175    92 QLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGalglepINWLG-----DPSLALP 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 177 PIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKG 256
Cdd:COG1175   167 AVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGG 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1789829750 257 GPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 308
Cdd:COG1175   247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
35-307 3.98e-24

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 99.13  E-value: 3.98e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  35 MTIPAMILVCIFLYLPFLQGAMYSFTNSQGYG-DYKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLAVL 113
Cdd:PRK10561    2 LVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 114 LNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALHIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLL 193
Cdd:PRK10561   82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 194 YLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP--FF--TINMVLSLKNSLGAFDqvmALTKGGPDSKTETVSYLI 269
Cdd:PRK10561  162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPvsFFllVVNLVYAFFDTFPVID---AATSGGPVQATTTLIYKI 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1789829750 270 FQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGK 307
Cdd:PRK10561  239 YREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 89-296 3.81e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.14  E-value: 3.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  89 YLFTIFIAILITLGTNILGMFLAVLLNSKI-AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGqalhidwlstsm 167
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 168 isNPDLAWFPIVFLSIWQGvAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAF 247
Cdd:cd06261    69 --LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1789829750 248 DQVMALTKGGPDskteTVSYLIFQNGLGNGEYSYQMANAVTFFIVLAIL 296
Cdd:cd06261   146 ALVSFLGGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 104-299 9.85e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 9.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 104 NILGMFLAVLLNSKiaFKNGFRAIFFIPYTLSVLVIGYVFKYIFMtplpalgqalhidwlstsmISNPDLAWFPIVFLSI 183
Cdd:pfam00528   2 IPLGIIAALRRGRR--LDRLLRPLIDLLQALPSFVLAILLVVIAI-------------------LSILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 184 WQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKGGPDSKTE 263
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1789829750 264 TVSYLIFQnglgngeysYQMANAVTFFIVLAILAFV 299
Cdd:pfam00528 141 IEAILGYD---------YPEIQGPVLAAALILLLLN 167
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 45-226 7.10e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 47.37  E-value: 7.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  45 IFLYLPFLQGAMYSFTNSQGygdyKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLA-VLLNSKIAFKNG 123
Cdd:TIGR03262  16 LFLLLPLLALLTKSVYDSDG----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRIPGKGA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 124 FRAIFFIPYTLSVLVIGYVFKYIFMTplpalgQALHIDWLSTSMISNPdlawFPIVFLSIWQGVAYSTLLYLAGLQTIDN 203
Cdd:TIGR03262  92 FRLVALLPLLAPSLLPAISLIYLFGN------QGLLKGLLGGFSIYGF----WGIVIGEVFYTFPHALMILVTALSLADG 161

                         170       180
                  ....*....|....*....|...
gi 1789829750 204 EIYEAASIDGVNAWQNFWQITFP 226
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
24-308 9.16e-85

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 256.99  E-value: 9.16e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  24 SKRKVDPAFYWMTIPAMILVCIFLYLPFLQGAMYSFTNSQGYG-DYKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLG 102
Cdd:COG1175    12 RRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 103 TNILGMFLAVLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALH------IDWLStsmisNPDLAWF 176
Cdd:COG1175    92 QLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGalglepINWLG-----DPSLALP 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 177 PIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKG 256
Cdd:COG1175   167 AVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGG 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1789829750 257 GPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 308
Cdd:COG1175   247 GPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 29-290 7.78e-37

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 133.68  E-value: 7.78e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  29 DPAFYWMTIPAMILVCIFLYLPFLqGAMYSFTN---SQGYGDYKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNI 105
Cdd:COG4209    26 DWQLYLMLLPGLIYLLIFSYLPMY-GIVIAFKDynpFKGIFGSPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFP 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 106 LGMFLAVLLNS--KIAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTP----LPALGQALHIDwlSTSMISNPDLAWFPIV 179
Cdd:COG4209   105 LPIILALLLNElrSKRFKKTVQTISYLPHFLSWVVVAGIV-YQFLSPdtglVNQLLRALGGE--PINFLTEPKYFRPIYV 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 180 FLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGA-FDQVMALTKGGP 258
Cdd:COG4209   182 FSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNILNVgFEQIYLLYNPLN 261

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1789829750 259 DSKTETVSYLIFQNGLGNGEYSYqmANAVTFF 290
Cdd:COG4209   262 YSTSDVIDTYVYRIGLQNGDYSY--ATAVGLF 291
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
35-307 3.98e-24

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 99.13  E-value: 3.98e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  35 MTIPAMILVCIFLYLPFLQGAMYSFTNSQGYG-DYKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLAVL 113
Cdd:PRK10561    2 LVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 114 LNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALHIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLL 193
Cdd:PRK10561   82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 194 YLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP--FF--TINMVLSLKNSLGAFDqvmALTKGGPDSKTETVSYLI 269
Cdd:PRK10561  162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPvsFFllVVNLVYAFFDTFPVID---AATSGGPVQATTTLIYKI 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1789829750 270 FQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGK 307
Cdd:PRK10561  239 YREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 33-310 1.11e-21

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 92.52  E-value: 1.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  33 YWMTIPAMILVCIFLYLPFLQGAMYSFTNSQGYGDYKF-IGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLA 111
Cdd:COG1176    12 LLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPgFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 112 VLL-NSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMT--PLPALGQALHIDWLSTSMISNPdlawFPIVFLSIWQGVA 188
Cdd:COG1176    92 YFLaRAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRngLLNSLLLALGLIDEPLRLLYTE----FAVVIGLVYVYLP 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 189 YSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALtkGGPDSKteTVSYL 268
Cdd:COG1176   168 FMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--GGGKVL--MIGNL 243

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1789829750 269 IFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKEKV 310
Cdd:COG1176   244 IYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
33-299 8.50e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 80.59  E-value: 8.50e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  33 YWMTIPAMILVCIFLYLPFLQGAMYSFTNsqgygdykfiGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLAV 112
Cdd:COG1178    10 RLLLLLLALLLALLVLLPLLALLLRAFTD----------GLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAW 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 113 LLN-SKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFmTPLPALGQALHidwlSTSMISNPDL-AWFPIVFLSIWQGVAYS 190
Cdd:COG1178    80 LLArTDFPGRRLLRWLLLLPLALPPYVVALAWIALF-GPNGLLNTLLR----ALFGLEPPDIyGLGGIILVLVLFNYPYV 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 191 TLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALtkGGpdsKTETVSYLIF 270
Cdd:COG1178   155 YLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL--GG---GYTTLTTAIY 229

                         250       260
                  ....*....|....*....|....*....
gi 1789829750 271 QngLGNGEYSYQMANAVTFFIVLAILAFV 299
Cdd:COG1178   230 Q--AWLGDFDLGAAAALALVLLLLVLLLL 256
malF PRK10999
maltose ABC transporter permease MalF;
70-303 7.77e-16

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 77.69  E-value: 7.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  70 FIGFKNYIAMFQDARVGHAYLfTIFI-----AILITLGTNILGMFLAVLLN-SKIAFKNGFRAIFFIPYT----LSVLVi 139
Cdd:PRK10999  264 TIGWKNFTRVFTDEGIQKPFI-AIFIwtvvfSLLTVVLTVAVGMVLACLVQwEALKGKAVYRVLLILPYAvpsfISILI- 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 140 gyvFKYIFMTPLPALGQAL-HIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQ 218
Cdd:PRK10999  342 ---FKGLFNQSFGEINMMLsALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 219 NFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKGGPDSKTET---------VSY---LIFQNGlGNGEYSYQMANA 286
Cdd:PRK10999  419 NFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTtpagytdllVSYtyrIAFEGG-GGQDFGLAAAIA 497

                         250
                  ....*....|....*..
gi 1789829750 287 VTFFIVLAILAFVQLKF 303
Cdd:PRK10999  498 TLIFLLVGALAILNLKA 514
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 40-299 8.28e-16

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 75.53  E-value: 8.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  40 MILVCIFLYLPFLQGAMYSFtNSQGYGDYKFIGF--KNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLAVLLN-S 116
Cdd:COG1177    13 LALVLLFLYLPILVLVLYSF-NDSWFLTFPPEGFtlRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALArY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 117 KIAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTPLPALGQALHIdWLSTSMISnpdlawFPIVFLSIwqgvaystllyLA 196
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGVAL-LLLFSALGLSGGLWGL-ILAHVVFT------LPFVVLVV-----------LA 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 197 GLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFdqVMALTKGGPDskTETVSYLIFqNGLGN 276
Cdd:COG1177   153 RLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEF--VITLFLAGPG--VTTLPVYIY-SMIRR 227

                         250       260
                  ....*....|....*....|...
gi 1789829750 277 GeySYQMANAVTFFIVLAILAFV 299
Cdd:COG1177   228 G--ISPEINALSTLLILLSLLLL 248
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
21-299 6.23e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 69.03  E-value: 6.23e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  21 SKYSKRKVDPAFYWMTIPAMILVCIFLYLPFLQGAMYSFTNSQGYGdykfIGFKNYIAMFQDARVGHAYLFTIFIAILIT 100
Cdd:COG1178   276 RRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALDDN----LTLDNYRFVLLDPSLLRALLNSLLLALLAA 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 101 LGTNILGMFLAVLLN-SKIAFKNGFRAIFFIPYTLS--VLVIGYVFKYIFMTPLPaLGQALHIDWLSTSMIsnpdlaWFP 177
Cdd:COG1178   352 LLAVLLALLLAYLVRrRRGRLARLLDRLAMLPYAVPgiVLGLGLLLLFNRPLPLL-LYGTLAILVLAYVVR------FLP 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 178 IVFLSIwqgvaystllyLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALtkGG 257
Cdd:COG1178   425 FALRSL-----------EAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLL--RP 491

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1789829750 258 PDskTETVSYLIFQNglgNGEYSYQMANAVTFFIVLAILAFV 299
Cdd:COG1178   492 PG--FETLAVLIYQL---ASSGRYGEAAALALLLVLVSLLPV 528
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 25-301 2.88e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 65.54  E-value: 2.88e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  25 KRKVDPAFYWMTIPAMILVCIFLYLPFLQGAMYSFTnsqgygdykfIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTN 104
Cdd:COG0555     2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAG----------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 105 ILGMFLAVLLnSKIAF--KNGFRAIFFIPYTLSVLVIGYVFKYIFMTPlPALGQALH---IDWLSTsmisnpdlaWFPIV 179
Cdd:COG0555    72 VFGLPLAWVL-VRYRFpgKRLVDALVDLPFALPTAVAGIALLLLFGPN-GWLGQLLAplgIKVAFT---------PLGIV 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 180 FLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTkGGPD 259
Cdd:COG0555   141 LAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIA-GNLP 219

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1789829750 260 SKTETVSYLIFQNGLgngEYSYQMANAVTffIVLAILAFVQL 301
Cdd:COG0555   220 MKTEILPLLIYLKLE---EGDYAGATAIA--LVLLLISFLLL 256
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 89-296 3.81e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.14  E-value: 3.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  89 YLFTIFIAILITLGTNILGMFLAVLLNSKI-AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGqalhidwlstsm 167
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 168 isNPDLAWFPIVFLSIWQGvAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAF 247
Cdd:cd06261    69 --LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1789829750 248 DQVMALTKGGPDskteTVSYLIFQNGLGNGEYSYQMANAVTFFIVLAIL 296
Cdd:cd06261   146 ALVSFLGGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 21-230 9.00e-11

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 61.26  E-value: 9.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  21 SKYSKRKVDPAFYWMTIPAMILVCIFLYLPFLQGAMYSFTNSQGYGDYKF------IGFKNYIAMFQDARVGHAYLFTIF 94
Cdd:COG0395     2 SATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPsllpseFTLENYRAAFTDGPFGRYLLNSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  95 IAILITLGTNILGMFLAVLLnSKIAFKnGFRAIFFIpyTLSVLVIGYVfkyIFMTPLPALGQALHidWLSTsmisnpdla 174
Cdd:COG0395    82 VAVVSTVLSLLLSSLAAYAL-ARFRFR-GRKLLFLL--ILATLMIPGQ---VLLIPLYLLFRQLG--LLNT--------- 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1789829750 175 WFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP 230
Cdd:COG0395   144 YWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKP 199
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 104-299 9.85e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 9.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 104 NILGMFLAVLLNSKiaFKNGFRAIFFIPYTLSVLVIGYVFKYIFMtplpalgqalhidwlstsmISNPDLAWFPIVFLSI 183
Cdd:pfam00528   2 IPLGIIAALRRGRR--LDRLLRPLIDLLQALPSFVLAILLVVIAI-------------------LSILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 184 WQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKGGPDSKTE 263
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1789829750 264 TVSYLIFQnglgngeysYQMANAVTFFIVLAILAFV 299
Cdd:pfam00528 141 IEAILGYD---------YPEIQGPVLAAALILLLLN 167
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 25-230 2.43e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 54.24  E-value: 2.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  25 KRKVDPAFYWMTIPAMILVCIFLYlPFLQGAMYSFTNSQGygdykfIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTN 104
Cdd:PRK15050   18 RRRRLRPLLWLLLPLLVLAPLVVY-PLVRVVLQSLTGEHG------LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 105 ILGMFLAVLLnskiafkngfraiFFIPYTLSVLVIGYVFKYIfmtPLPALGQALHIDWL--STSMISNPDLAWF-----P 177
Cdd:PRK15050   91 VLGVLLALVL-------------AFVPFPGASLVGRFIDTFV---AFPSFLITLAFTFLygSAGSVNIALQRLFgleapP 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1789829750 178 IVFL-SIWQGVAYSTLLY--------LAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP 230
Cdd:PRK15050  155 LDFLySPGGVILAEITFYtpfvvrplLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWP 216
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 40-309 9.96e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 49.47  E-value: 9.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  40 MILVC--IFLYLPFLQGAMYSFTNSQGYGDYKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLAVLLNSK 117
Cdd:PRK10592   14 VILVLgfTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 118 IAFK--NGFRAIFFIPYTLSVLVIGYVFKYIFMtplpALGQAlhIDWLStsmisnpDLAWFPIVFLSIWQGVAYSTLLYL 195
Cdd:PRK10592   94 GRFRgsNGFAFMITAPLVMPDVITGLSLLLLFV----ALAHA--IGWPA-------DRGMLTIWLAHVTFCTAYVAVVIS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 196 AGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGafDQVMALTKGGPDSKteTVSYLIFQNgLG 275
Cdd:PRK10592  161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLD--DLVIASFVSGPGAT--TLPMLVFSS-VR 235

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1789829750 276 NGEYSYQMANAVTFFIVLAILAFVQLKFFSGKEK 309
Cdd:PRK10592  236 MGVNPEINALATLILGVVGIVGFIAWYLMARAEK 269
modB PRK09421
molybdate ABC transporter permease subunit;
94-247 1.78e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 47.99  E-value: 1.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  94 FIAILITLGtniLGMFLAVLLNSK-IAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTPLPALGQALhidwlstsmisnpd 172
Cdd:PRK09421   19 SVAVLFSLP---FGILVAWLLARCrFPGKSLLDSLLHLPLVLPPVVTGYLL-LISMGRRGFIGQWL-------------- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 173 LAWFPIVFLSIWQGVAYST------LLYLA---GLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNS 243
Cdd:PRK09421   81 YEWFGISFAFSWRGAALAAavmafpLMVRAirlSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160


                  ....
gi 1789829750 244 LGAF 247
Cdd:PRK09421  161 LGEF 164
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 45-226 7.10e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 47.37  E-value: 7.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  45 IFLYLPFLQGAMYSFTNSQGygdyKFIGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLA-VLLNSKIAFKNG 123
Cdd:TIGR03262  16 LFLLLPLLALLTKSVYDSDG----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRIPGKGA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 124 FRAIFFIPYTLSVLVIGYVFKYIFMTplpalgQALHIDWLSTSMISNPdlawFPIVFLSIWQGVAYSTLLYLAGLQTIDN 203
Cdd:TIGR03262  92 FRLVALLPLLAPSLLPAISLIYLFGN------QGLLKGLLGGFSIYGF----WGIVIGEVFYTFPHALMILVTALSLADG 161

                         170       180
                  ....*....|....*....|...
gi 1789829750 204 EIYEAASIDGVNAWQNFWQITFP 226
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLP 184
cysT CHL00187
sulfate transport protein; Provisional
 32-271 4.16e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 44.23  E-value: 4.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  32 FYWMTIPAMILVCIFLYLPFLqgAMYSFTNSQGygdykfigFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLA 111
Cdd:CHL00187   10 FSSIYIISLSYIIFLLVLPIL--ALLIKASQQP--------WSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 112 -VLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPaLGQALhiDWLSTSMISNPDLAWFPIVFLSIwqgvAYS 190
Cdd:CHL00187   80 wVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGW-IGHLL--SHLGIQIVFTKLGVLLAMIFVSF----PFV 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 191 TLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKGGPdSKTETVSYLIF 270
Cdd:CHL00187  153 VRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIP-FKDLVASVLIF 231


                  .
gi 1789829750 271 Q 271
Cdd:CHL00187  232 Q 232
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
198-296 7.15e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 43.59  E-value: 7.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 198 LQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTkGGPDSKTETVSYLIFqngLGNG 277
Cdd:PRK10971  163 LEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIA-GNIAWKTEVTSLMIF---VRLQ 238

                          90
                  ....*....|....*....
gi 1789829750 278 EYSYQMANAVTFFIVLAIL 296
Cdd:PRK10971  239 EFDYPAASAIASVILAASL 257
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 41-239 9.03e-04

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 40.13  E-value: 9.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750  41 ILVCIFLYLPFLQGAMYSFTNSQG-YGDYKF---IGFKNYIAMFQDARVGHAYLFTIFIAILITLGTNILGMFLAVLLnS 116
Cdd:COG3833    23 IILAIIALFPILWVVSASFNPGGSlYSSSLIpenFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAF-S 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789829750 117 KIAFK------NGFRAIFFIPYTLSvlvigyvfkyifMTPLPALGQALHIDWLSTSMIsnpdlawfpIVFLSIwqGVAYS 190
Cdd:COG3833   102 RFRFKgrkaglLALLLLQMFPAFLA------------LVALYLLLSALGLLNTLLGLI---------LVYLGG--AIPFN 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1789829750 191 TLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLS 239
Cdd:COG3833   159 TWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLS 207
malG PRK10998
maltose ABC transporter permease MalG;
199-239 8.76e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 37.38  E-value: 8.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1789829750 199 QTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLS 239
Cdd:PRK10998  182 ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILS 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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