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Conserved domains on  [gi|1774458454|gb|QGG58675|]
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ABC transporter permease subunit [Paenibacillus sp. B01]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-260 2.32e-66

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 207.26  E-value: 2.32e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   1 MSLPIVFIFNHAFKPQNELFLFPPRFFVQNPTWRNFEALFlhasnATVPFTRYLFNSVVVLGLTLASVIVISTMAAYALA 80
Cdd:COG0395    28 FLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAF-----TDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALA 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  81 KHRFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFGHVLPSLA--SPVAVFMLVGFISQIPGDLLEAARIDG 158
Cdd:COG0395   103 RFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSIPRELEEAARIDG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 159 AGHLGIFARIVLPLSAPAVATISILTFQAAWGDVETSTLFMQKEAMRTLAFYVNSLLSGLQNNvagQNMAAAAGLLLFLP 238
Cdd:COG0395   183 ASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTD---WGLLMAAAVIATLP 259

                         250       260
                  ....*....|....*....|..
gi 1774458454 239 NLIIFLLFQRKVLESMVHSGIK 260
Cdd:COG0395   260 VLILFLFLQRYFVRGLTAGAVK 281
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-260 2.32e-66

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 207.26  E-value: 2.32e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   1 MSLPIVFIFNHAFKPQNELFLFPPRFFVQNPTWRNFEALFlhasnATVPFTRYLFNSVVVLGLTLASVIVISTMAAYALA 80
Cdd:COG0395    28 FLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAF-----TDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALA 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  81 KHRFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFGHVLPSLA--SPVAVFMLVGFISQIPGDLLEAARIDG 158
Cdd:COG0395   103 RFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSIPRELEEAARIDG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 159 AGHLGIFARIVLPLSAPAVATISILTFQAAWGDVETSTLFMQKEAMRTLAFYVNSLLSGLQNNvagQNMAAAAGLLLFLP 238
Cdd:COG0395   183 ASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTD---WGLLMAAAVIATLP 259

                         250       260
                  ....*....|....*....|..
gi 1774458454 239 NLIIFLLFQRKVLESMVHSGIK 260
Cdd:COG0395   260 VLILFLFLQRYFVRGLTAGAVK 281
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
4-257 2.21e-22

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 93.26  E-value: 2.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   4 PIVFIFNHAFKPQNELFLFPPRFFVQNPTWRNFEALFLHAS-NATVPFTRYLFNSVVV-LGLTLASvIVISTMAAYALAK 81
Cdd:PRK10973   26 PLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVgNNSAPFGRMLLNSFVMaFSITVGK-ITVSMLSAFAIVW 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  82 HRFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFGHVLPSLASPVAVFMLVGFISQIPGDLLEAARIDGAGH 161
Cdd:PRK10973  105 FRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARIDGASP 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 162 LGIFARIVLPLSAPAVATISILTFQAAWGDVETSTLFMQKEAMRTLAFYVNSLLSGlQNNVAGQNMAAAAGLLLFLPNLI 241
Cdd:PRK10973  185 MRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT-GEGTTEWNQVMAAMLLTLIPPVV 263

                         250
                  ....*....|....*.
gi 1774458454 242 IFLLFQRKVLESMVHS 257
Cdd:PRK10973  264 IVLAMQRAFVRGLVDS 279
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 54-192 9.90e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.52  E-value: 9.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  54 LFNSVVVLGLTLASVIVISTMAAYALAKHRFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFGHVLPSLA-- 131
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1774458454 132 ----SPVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTFQAAWGDV 192
Cdd:cd06261    81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-191 2.80e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 2.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 112 IVSGLGLNNTYFGHVLPSLASPVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTFQAAWGD 191
Cdd:pfam00528  44 ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGG 123
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-260 2.32e-66

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 207.26  E-value: 2.32e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   1 MSLPIVFIFNHAFKPQNELFLFPPRFFVQNPTWRNFEALFlhasnATVPFTRYLFNSVVVLGLTLASVIVISTMAAYALA 80
Cdd:COG0395    28 FLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAF-----TDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALA 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  81 KHRFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFGHVLPSLA--SPVAVFMLVGFISQIPGDLLEAARIDG 158
Cdd:COG0395   103 RFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSIPRELEEAARIDG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 159 AGHLGIFARIVLPLSAPAVATISILTFQAAWGDVETSTLFMQKEAMRTLAFYVNSLLSGLQNNvagQNMAAAAGLLLFLP 238
Cdd:COG0395   183 ASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTD---WGLLMAAAVIATLP 259

                         250       260
                  ....*....|....*....|..
gi 1774458454 239 NLIIFLLFQRKVLESMVHSGIK 260
Cdd:COG0395   260 VLILFLFLQRYFVRGLTAGAVK 281
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 4-248 5.08e-40

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 139.52  E-value: 5.08e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   4 PIVFIFNHAFKPQNelFLFPPRFFVQNPTWRNFEALFlhasnATVPFTRYLFNSVVVLGLTLASVIVISTMAAYALAKHR 83
Cdd:COG3833    32 PILWVVSASFNPGG--SLYSSSLIPENFTLENYKKLF-----TETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFR 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  84 FHFKALILSLITLSLMFaPETVS-IPRYLIVSGLGLNNTYFGHVLPSL--ASPVAVFMLVGFISQIPGDLLEAARIDGAG 160
Cdd:COG3833   105 FKGRKAGLLALLLLQMF-PAFLAlVALYLLLSALGLLNTLLGLILVYLggAIPFNTWLMKGYFDTIPKELDEAAKIDGAS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 161 HLGIFARIVLPLSAPAVATISILTFQAAWGDVETSTLFMQKEAMRTLAFYVNSLLSGLQNN-----VAGqnmaaaaGLLL 235
Cdd:COG3833   184 HFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQRNTnwgvfAAG-------AVLV 256

                         250
                  ....*....|...
gi 1774458454 236 FLPNLIIFLLFQR 248
Cdd:COG3833   257 AIPIVILFLFLQR 269
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
4-257 2.21e-22

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 93.26  E-value: 2.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   4 PIVFIFNHAFKPQNELFLFPPRFFVQNPTWRNFEALFLHAS-NATVPFTRYLFNSVVV-LGLTLASvIVISTMAAYALAK 81
Cdd:PRK10973   26 PLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVNGVgNNSAPFGRMLLNSFVMaFSITVGK-ITVSMLSAFAIVW 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  82 HRFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFGHVLPSLASPVAVFMLVGFISQIPGDLLEAARIDGAGH 161
Cdd:PRK10973  105 FRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARIDGASP 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 162 LGIFARIVLPLSAPAVATISILTFQAAWGDVETSTLFMQKEAMRTLAFYVNSLLSGlQNNVAGQNMAAAAGLLLFLPNLI 241
Cdd:PRK10973  185 MRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIAT-GEGTTEWNQVMAAMLLTLIPPVV 263

                         250
                  ....*....|....*.
gi 1774458454 242 IFLLFQRKVLESMVHS 257
Cdd:PRK10973  264 IVLAMQRAFVRGLVDS 279
malG PRK10998
maltose ABC transporter permease MalG;
49-260 6.46e-17

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 78.21  E-value: 6.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  49 PFTRYLFNSVVVLGLTLASVIVISTMAAYALAKHRFHFKALILSLITLSLMFAPETVSIPRYLI-------VSGLGLNnT 121
Cdd:PRK10998   80 PVLLWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALfdrlgqyIPFIGLN-T 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 122 YFGHVLPSLAS-PVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTFQAAWGDVETSTLFMQ 200
Cdd:PRK10998  159 HGGVIFAYLGGiALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLR 238

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 201 KEAMRTLAFYVNSLLSGlQNNVAGQnmAAAAGLLLFLPNLIIFLLFQRKVLESMVHSGIK 260
Cdd:PRK10998  239 DVNSYTLAVGMQQYLNP-QNYLWGD--FAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVK 295
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 3-215 1.45e-15

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 73.99  E-value: 1.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   3 LPIVFIFNHAFKPQNELFLFPPRFfvqnpTWRNFEALFlhasnATVPFTRYLFNSVVVLGLTLASVIVISTMAAYALAKH 82
Cdd:COG1177    22 LPILVLVLYSFNDSWFLTFPPEGF-----TLRWYAELF-----SDPRLLDALLNSLLIALLSTLLATVLGTPAALALARY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  83 RFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFG----HVLPSLasPVAVFMLVGFISQIPGDLLEAARIDG 158
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGlilaHVVFTL--PFVVLVVLARLQGFDPSLEEAARDLG 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1774458454 159 AGHLGIFARIVLPLSAPAVATISILTFQAAWGDVETsTLFMQKEAMRTLAFYVNSLL 215
Cdd:COG1177   170 ASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVI-TLFLAGPGVTTLPVYIYSMI 225
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 54-192 9.90e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.52  E-value: 9.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  54 LFNSVVVLGLTLASVIVISTMAAYALAKHRFHFKALILSLITLSLMFAPETVSIPRYLIVSGLGLNNTYFGHVLPSLA-- 131
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1774458454 132 ----SPVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTFQAAWGDV 192
Cdd:cd06261    81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-216 1.51e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 57.86  E-value: 1.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  25 RFFVQNPTWRNFEALFLHASnatvpFTRYLFNSVVVLGLTLASVIVISTMAAYALAKHRFHFKALILSLitlslmfapet 104
Cdd:COG1178   316 KALDDNLTLDNYRFVLLDPS-----LLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRL----------- 379

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 105 VSIPRYL--IVSGLGLNNTYFGHVLPSL--------------ASPVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARI 168
Cdd:COG1178   380 AMLPYAVpgIVLGLGLLLLFNRPLPLLLygtlailvlayvvrFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRV 459

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1774458454 169 VLPLSAPAVATISILTFQAAWGDVeTSTLFMQKEAMRTLAFYVNSLLS 216
Cdd:COG1178   460 TLPLLRPGLLAAALLVFVTSMKEL-SATLLLRPPGFETLAVLIYQLAS 506
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
52-185 3.19e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 54.01  E-value: 3.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  52 RYLFNSVVVLGLTLASVIVISTMAAYALAKHRFHFKALILSLITLSLMFAPETVSI-------PRYLIVSGLGlnnTYFG 124
Cdd:COG1178    54 RALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALawialfgPNGLLNTLLR---ALFG 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1774458454 125 HVLPSLAS-------------PVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTF 185
Cdd:COG1178   131 LEPPDIYGlggiilvlvlfnyPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVF 204
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 3-197 5.44e-08

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 52.46  E-value: 5.44e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454   3 LPIVFIFNHAFKPQNELFLFPPRFfvqnpTWRNFEALFLHASNATVpftryLFNSVVVLGLTLASVIVISTMAAYALAKH 82
Cdd:COG1176    28 LPLLLLLVYSFTTRDPYGGVVPGF-----TLENYARLFTDPLYLKV-----LLRTLWIALLTTLICLLLGYPIAYFLARA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  83 RFHFKALILSLITL-------------SLMFAPETVsIPRYLIVSGL-----GLNNTYFGHVLPSLAS--PVAVFMLVGF 142
Cdd:COG1176    98 PPRWRNLLLLLVILpfwtsflvrtyawIVLLGRNGL-LNSLLLALGLideplRLLYTEFAVVIGLVYVylPFMVLPLYAA 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1774458454 143 ISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTFQAAWGDVETSTL 197
Cdd:COG1176   177 LEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPAL 231
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
134-185 6.34e-07

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 49.36  E-value: 6.34e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1774458454 134 VAVFMLVGfISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTF 185
Cdd:COG1175   180 NMLIFLAG-LQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLST 230
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-191 2.80e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 2.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454 112 IVSGLGLNNTYFGHVLPSLASPVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTFQAAWGD 191
Cdd:pfam00528  44 ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGG 123
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 131-185 9.01e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 42.81  E-value: 9.01e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1774458454 131 ASPVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTF 185
Cdd:COG0555   147 SLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAF 201
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 57-196 1.27e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 42.28  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774458454  57 SVVVLGLTLASVIviSTMAAYALAKHRFHFKALILSLITLSLMfAPETV---SIPRYLIVSG--LGLNNTYFGHVlpSLA 131
Cdd:PRK09500   64 TMAVFSATFATLI--GSLTAVALYRYRFRGKKFVSGMLFVVMM-SPDIVmaiSLLVLFMLLGiqLGFWSLLFAHI--TFC 138

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1774458454 132 SPVAVFMLVGFISQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTFQAAWGDVETST 196
Cdd:PRK09500  139 LPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSS 203
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 144-185 6.22e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 37.29  E-value: 6.22e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1774458454 144 SQIPGDLLEAARIDGAGHLGIFARIVLPLSAPAVATISILTF 185
Cdd:PRK15050  185 AQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCL 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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