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Conserved domains on  [gi|1772203922|gb|QFY26032|]
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transcriptional regulator (plasmid) [Klebsiella variicola]

Protein Classification

DUF905 domain-containing protein( domain architecture ID 10532453)

uncharacterized DUF905 domain-containing protein similar to Escherichia coli YubL, YkfF and YpjL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF905 pfam06006
Bacterial protein of unknown function (DUF905); This family consists of several short ...
 11-80 1.25e-33

Bacterial protein of unknown function (DUF905); This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646.


:

Pssm-ID: 368702  Cd Length: 70  Bit Score: 109.97  E-value: 1.25e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1772203922 11 SLPDGTFTRRQAQVAAAQYQNVAIEDDQGTHFRLVVRHQdDGSMIWRVWNFEPGGEYLMNRYIRYYGVRK 80
Cdd:pfam06006  2 SLPDGTFTREQAQAVAAQYQNVAIEDDQGTHFRLVVRDA-DGEMVWRAWNFEPGAGYWLNRYIRDYGIRK 70
 
Name Accession Description Interval E-value
DUF905 pfam06006
Bacterial protein of unknown function (DUF905); This family consists of several short ...
 11-80 1.25e-33

Bacterial protein of unknown function (DUF905); This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646.


Pssm-ID: 368702  Cd Length: 70  Bit Score: 109.97  E-value: 1.25e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1772203922 11 SLPDGTFTRRQAQVAAAQYQNVAIEDDQGTHFRLVVRHQdDGSMIWRVWNFEPGGEYLMNRYIRYYGVRK 80
Cdd:pfam06006  2 SLPDGTFTREQAQAVAAQYQNVAIEDDQGTHFRLVVRDA-DGEMVWRAWNFEPGAGYWLNRYIRDYGIRK 70
 
Name Accession Description Interval E-value
DUF905 pfam06006
Bacterial protein of unknown function (DUF905); This family consists of several short ...
 11-80 1.25e-33

Bacterial protein of unknown function (DUF905); This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646.


Pssm-ID: 368702  Cd Length: 70  Bit Score: 109.97  E-value: 1.25e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1772203922 11 SLPDGTFTRRQAQVAAAQYQNVAIEDDQGTHFRLVVRHQdDGSMIWRVWNFEPGGEYLMNRYIRYYGVRK 80
Cdd:pfam06006  2 SLPDGTFTREQAQAVAAQYQNVAIEDDQGTHFRLVVRDA-DGEMVWRAWNFEPGAGYWLNRYIRDYGIRK 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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