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Conserved domains on  [gi|1760234714|gb|QFK72115|]
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2-oxo acid dehydrogenase subunit E2 [Pradoshia sp. D12]

Protein Classification

dihydrolipoamide acetyltransferase family protein( domain architecture ID 11485570)

dihydrolipoamide acetyltransferase family protein is the acetyltransferase (E2) subunit of a 2-oxo acid dehydrogenase multienzyme complex, such as Pseudomonas putida lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex

EC:  2.3.-.-
Gene Ontology:  GO:0016407|GO:0045240
PubMed:  3332999|24077172
SCOP:  4000430

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PRK11856 PRK11856
branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
1-418 2.44e-177

branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed


:

Pssm-ID: 237001 [Multi-domain]  Cd Length: 411  Bit Score: 501.24  E-value: 2.44e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   1 MPIEqMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLA 80
Cdd:PRK11856    1 MMFE-FKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  81 GEPDSSEEAPKEEKNHSEEKSESLIQTDQSNKA-------------RYSPAVLKLSQEHGINLENVAGSGAGGRITRKDI 147
Cdd:PRK11856   80 GEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAaaaapaapaaaaaKASPAVRKLARELGVDLSTVKGSGPGGRITKEDV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 148 LKAVESGTAAKAQVNIENAEPKADTqmyepnlgvkqkssgsdmkiESGDREIPVTGIRKAIAQNMVRSKHEIPHAWTMVE 227
Cdd:PRK11856  160 EAAAAAAAPAAAAAAAAAAAPPAAA--------------------AEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDE 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 228 ADVTNLVQYRDSLKKEfrqkeGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFA 307
Cdd:PRK11856  220 VDVTALLALRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDA 294
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 308 DEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGnMIAIRD 387
Cdd:PRK11856  295 DKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDG-EIVVRK 373
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1760234714 388 RVNLCLSLDHRILDGLVCGRFLARVKDILEH 418
Cdd:PRK11856  374 VMPLSLSFDHRVIDGADAARFLKALKELLEN 404
 
Name Accession Description Interval E-value
PRK11856 PRK11856
branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
1-418 2.44e-177

branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed


Pssm-ID: 237001 [Multi-domain]  Cd Length: 411  Bit Score: 501.24  E-value: 2.44e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   1 MPIEqMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLA 80
Cdd:PRK11856    1 MMFE-FKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  81 GEPDSSEEAPKEEKNHSEEKSESLIQTDQSNKA-------------RYSPAVLKLSQEHGINLENVAGSGAGGRITRKDI 147
Cdd:PRK11856   80 GEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAaaaapaapaaaaaKASPAVRKLARELGVDLSTVKGSGPGGRITKEDV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 148 LKAVESGTAAKAQVNIENAEPKADTqmyepnlgvkqkssgsdmkiESGDREIPVTGIRKAIAQNMVRSKHEIPHAWTMVE 227
Cdd:PRK11856  160 EAAAAAAAPAAAAAAAAAAAPPAAA--------------------AEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDE 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 228 ADVTNLVQYRDSLKKEfrqkeGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFA 307
Cdd:PRK11856  220 VDVTALLALRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDA 294
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 308 DEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGnMIAIRD 387
Cdd:PRK11856  295 DKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDG-EIVVRK 373
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1760234714 388 RVNLCLSLDHRILDGLVCGRFLARVKDILEH 418
Cdd:PRK11856  374 VMPLSLSFDHRVIDGADAARFLKALKELLEN 404
sucB TIGR01347
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ...
7-417 9.58e-103

2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]


Pssm-ID: 273565 [Multi-domain]  Cd Length: 403  Bit Score: 310.90  E-value: 9.58e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   7 KMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAGEPDS- 85
Cdd:TIGR01347   4 KVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDATAa 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  86 SEEAPKEEKNHSEEKSESLIQTDQSNKARYSPAVLKLSQEHGINLENVAGSGAGGRITRKDILKAVESGTAAKAQVNIEN 165
Cdd:TIGR01347  84 PPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQPPAAAAA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 166 AepKADTQMYEPNlgvkqkssgsdmkiesgdREIPVTGIRKAIAQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFR 245
Cdd:TIGR01347 164 A--AAPAAATRPE------------------ERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFE 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 246 QKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEK 325
Cdd:TIGR01347 224 KKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKK 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 326 VRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGNmIAIRDRVNLCLSLDHRILDGLVC 405
Cdd:TIGR01347 304 ARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQ-IEIRPMMYLALSYDHRLIDGKEA 382
                         410
                  ....*....|..
gi 1760234714 406 GRFLARVKDILE 417
Cdd:TIGR01347 383 VTFLVTIKELLE 394
2-oxoacid_dh pfam00198
2-oxoacid dehydrogenases acyltransferase (catalytic domain); These proteins contain one to ...
212-420 5.12e-95

2-oxoacid dehydrogenases acyltransferase (catalytic domain); These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.


Pssm-ID: 425518 [Multi-domain]  Cd Length: 212  Bit Score: 284.05  E-value: 5.12e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 212 MVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFrQKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDK--IVRKKDINI 289
Cdd:pfam00198   1 MTESKQTIPHFTLTDEVDVTELLALREELKEDA-ADEETKLTFLPFLVKAVALALKKFPELNASWDGEEgeIVYKKYVNI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 290 SIAVSTDEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVE 369
Cdd:pfam00198  80 GIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAREGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVG 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1760234714 370 SIVKKPVVMHGNmIAIRDRVNLCLSLDHRILDGLVCGRFLARVKDILEHIT 420
Cdd:pfam00198 160 RIRKRPVVVDGE-IVVRKVMPLSLSFDHRVIDGAEAARFLNTLKELLENPE 209
AceF COG0508
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component ...
1-77 6.88e-31

Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [Energy production and conversion]; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440274 [Multi-domain]  Cd Length: 77  Bit Score: 113.24  E-value: 6.88e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1760234714   1 MPIEqMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:COG0508     1 MAIE-IKMPDLGESMTEGTIVEWLVKEGDTVKEGDPLAEVETDKATMEVPAPAAGVLLEILVKEGDTVPVGAVIAVI 76
lipoyl_domain cd06849
Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. ...
5-77 2.46e-28

Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.


Pssm-ID: 133458 [Multi-domain]  Cd Length: 74  Bit Score: 106.33  E-value: 2.46e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1760234714   5 QMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:cd06849     2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74
 
Name Accession Description Interval E-value
PRK11856 PRK11856
branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
1-418 2.44e-177

branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed


Pssm-ID: 237001 [Multi-domain]  Cd Length: 411  Bit Score: 501.24  E-value: 2.44e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   1 MPIEqMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLA 80
Cdd:PRK11856    1 MMFE-FKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  81 GEPDSSEEAPKEEKNHSEEKSESLIQTDQSNKA-------------RYSPAVLKLSQEHGINLENVAGSGAGGRITRKDI 147
Cdd:PRK11856   80 GEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAaaaapaapaaaaaKASPAVRKLARELGVDLSTVKGSGPGGRITKEDV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 148 LKAVESGTAAKAQVNIENAEPKADTqmyepnlgvkqkssgsdmkiESGDREIPVTGIRKAIAQNMVRSKHEIPHAWTMVE 227
Cdd:PRK11856  160 EAAAAAAAPAAAAAAAAAAAPPAAA--------------------AEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDE 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 228 ADVTNLVQYRDSLKKEfrqkeGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFA 307
Cdd:PRK11856  220 VDVTALLALRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDA 294
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 308 DEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGnMIAIRD 387
Cdd:PRK11856  295 DKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDG-EIVVRK 373
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1760234714 388 RVNLCLSLDHRILDGLVCGRFLARVKDILEH 418
Cdd:PRK11856  374 VMPLSLSFDHRVIDGADAARFLKALKELLEN 404
PRK11855 PRK11855
dihydrolipoamide acetyltransferase; Reviewed
3-417 7.61e-120

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237000 [Multi-domain]  Cd Length: 547  Bit Score: 359.52  E-value: 7.61e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   3 IEQMKMPQLGEsVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAGE 82
Cdd:PRK11855  119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAA 197
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  83 PDSSEEAPKEEK---------------NHSEEKSESLIQTDQSNKARYSPAVLKLSQEHGINLENVAGSGAGGRITRKDI 147
Cdd:PRK11855  198 APAAAAAPAAAApaaaaaaapapapaaAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDV 277
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 148 LKAVESGTAAKAQVnienAEPKADTQMYEPNLGVKQKSSGSDmkiESGDREIPVTGIRKAIAQNMVRSKHEIPHAWTMVE 227
Cdd:PRK11855  278 QAFVKGAMSAAAAA----AAAAAAAGGGGLGLLPWPKVDFSK---FGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDE 350
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 228 ADVTNLVQYRDSLKKEFrQKEGYNLTYFAFFVKAVAQALKEFPEMNSM--WAGDKIVRKKDINISIAVSTDEALYVPVIK 305
Cdd:PRK11855  351 ADITDLEALRKQLKKEA-EKAGVKLTMLPFFIKAVVAALKEFPVFNASldEDGDELTYKKYFNIGFAVDTPNGLVVPVIK 429
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 306 FADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPvVMHGNMIAI 385
Cdd:PRK11855  430 DVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKP-VWDGKEFVP 508
                         410       420       430
                  ....*....|....*....|....*....|..
gi 1760234714 386 RDRVNLCLSLDHRILDGLVCGRFLARVKDILE 417
Cdd:PRK11855  509 RLMLPLSLSYDHRVIDGATAARFTNYLKQLLA 540
PRK05704 PRK05704
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase;
1-417 5.94e-110

2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase;


Pssm-ID: 235571 [Multi-domain]  Cd Length: 407  Bit Score: 329.49  E-value: 5.94e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   1 MPIEqMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLA 80
Cdd:PRK05704    1 MMVE-IKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  81 GEPDSSEEAP--KEEKNHSEEKSESLIQTDQSNKARySPAVLKLSQEHGINLENVAGSGAGGRITRKDILKAVESGTAAK 158
Cdd:PRK05704   80 AAAGAAAAAAaaAAAAAAAPAQAQAAAAAEQSNDAL-SPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAP 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 159 AQVNIENAEPKAdtqmyepnlgvkqksSGSDMKIESgdREiPVTGIRKAIAQNMVRSKHEIPHAWTMVEADVTNLVQYRD 238
Cdd:PRK05704  159 AAPAAAAPAAAP---------------APLGARPEE--RV-PMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRK 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 239 SLKKEFRQKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIARE 318
Cdd:PRK05704  221 QYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKK 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 319 INELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGNmIAIRDRVNLCLSLDHR 398
Cdd:PRK05704  301 IAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQ-IVIRPMMYLALSYDHR 379
                         410
                  ....*....|....*....
gi 1760234714 399 ILDGLVCGRFLARVKDILE 417
Cdd:PRK05704  380 IIDGKEAVGFLVTIKELLE 398
sucB TIGR01347
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ...
7-417 9.58e-103

2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]


Pssm-ID: 273565 [Multi-domain]  Cd Length: 403  Bit Score: 310.90  E-value: 9.58e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   7 KMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAGEPDS- 85
Cdd:TIGR01347   4 KVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDATAa 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  86 SEEAPKEEKNHSEEKSESLIQTDQSNKARYSPAVLKLSQEHGINLENVAGSGAGGRITRKDILKAVESGTAAKAQVNIEN 165
Cdd:TIGR01347  84 PPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQPPAAAAA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 166 AepKADTQMYEPNlgvkqkssgsdmkiesgdREIPVTGIRKAIAQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFR 245
Cdd:TIGR01347 164 A--AAPAAATRPE------------------ERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFE 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 246 QKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEK 325
Cdd:TIGR01347 224 KKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKK 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 326 VRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGNmIAIRDRVNLCLSLDHRILDGLVC 405
Cdd:TIGR01347 304 ARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQ-IEIRPMMYLALSYDHRLIDGKEA 382
                         410
                  ....*....|..
gi 1760234714 406 GRFLARVKDILE 417
Cdd:TIGR01347 383 VTFLVTIKELLE 394
aceF PRK11854
pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
3-419 3.14e-99

pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated


Pssm-ID: 236999 [Multi-domain]  Cd Length: 633  Bit Score: 309.24  E-value: 3.14e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   3 IEQMKMPQLGesVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAG- 81
Cdd:PRK11854  206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGa 283
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  82 -----EPDSSEEAPKEEKNHSEEKSESLIQTDQS--------NKARYSPAVLKLSQEHGINLENVAGSGAGGRITRKDIL 148
Cdd:PRK11854  284 apaaaPAKQEAAAPAPAAAKAEAPAAAPAAKAEGksefaendAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQ 363
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 149 KAVEsgtAAKAQVniENAEPKADTQMYEPNLGVKQKSSGSDMK-IEsgdrEIPVTGIRKAIAQNMVRSKHEIPHAWTMVE 227
Cdd:PRK11854  364 AYVK---DAVKRA--EAAPAAAAAGGGGPGLLPWPKVDFSKFGeIE----EVELGRIQKISGANLHRNWVMIPHVTQFDK 434
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 228 ADVTNLVQYRDSLKKE-FRQKEGYNLTYFAFFVKAVAQALKEFPEMNSMWA--GDKIVRKKDINISIAVSTDEALYVPVI 304
Cdd:PRK11854  435 ADITELEAFRKQQNAEaEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSedGQRLTLKKYVNIGIAVDTPNGLVVPVF 514
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 305 KFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPvVMHGNMIA 384
Cdd:PRK11854  515 KDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEP-VWNGKEFA 593
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1760234714 385 IRDRVNLCLSLDHRILDGLVCGRFLARVKDILEHI 419
Cdd:PRK11854  594 PRLMLPLSLSYDHRVIDGADGARFITIINDRLSDI 628
2-oxoacid_dh pfam00198
2-oxoacid dehydrogenases acyltransferase (catalytic domain); These proteins contain one to ...
212-420 5.12e-95

2-oxoacid dehydrogenases acyltransferase (catalytic domain); These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.


Pssm-ID: 425518 [Multi-domain]  Cd Length: 212  Bit Score: 284.05  E-value: 5.12e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 212 MVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFrQKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDK--IVRKKDINI 289
Cdd:pfam00198   1 MTESKQTIPHFTLTDEVDVTELLALREELKEDA-ADEETKLTFLPFLVKAVALALKKFPELNASWDGEEgeIVYKKYVNI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 290 SIAVSTDEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVE 369
Cdd:pfam00198  80 GIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAREGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVG 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1760234714 370 SIVKKPVVMHGNmIAIRDRVNLCLSLDHRILDGLVCGRFLARVKDILEHIT 420
Cdd:pfam00198 160 RIRKRPVVVDGE-IVVRKVMPLSLSFDHRVIDGAEAARFLNTLKELLENPE 209
SucB_Actino TIGR02927
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; This model ...
5-417 3.12e-93

2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).


Pssm-ID: 200219 [Multi-domain]  Cd Length: 579  Bit Score: 292.30  E-value: 3.12e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   5 QMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAGE-- 82
Cdd:TIGR02927 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGTVLAIIGDANAap 207
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  83 ------------------------------PDSSEEAPKEEKnhSEEKSESLIQTDQSNKARYSPAVLKLSQEHGINLEN 132
Cdd:TIGR02927 208 aepaeeeapapseagsepapdpaaraphaaPDPPAPAPAPAK--TAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLST 285
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 133 VAGSGAGGRITRKDILKAVESGTAAKAQV-----NIENAEPKADTQMYEPNlgvKQKSSGSDMKiesgdreipVTGIRKA 207
Cdd:TIGR02927 286 VKGTGVGGRIRKQDVLAAAKAAEEARAAAaapaaAAAPAAPAAAAKPAEPD---TAKLRGTTQK---------MNRIRQI 353
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 208 IAQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFRQKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGD--KIVRKK 285
Cdd:TIGR02927 354 TADKTIESLQTSAQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAEtkEVTYHD 433
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 286 DINISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAI 365
Cdd:TIGR02927 434 VEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDELSGGTFTITNIGSGGALFDTPILNPPQAAI 513
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1760234714 366 LQVESIVKKPVVMH----GNMIAIRDRVNLCLSLDHRILDGLVCGRFLARVKDILE 417
Cdd:TIGR02927 514 LGTGAIVKRPRVIKdedgGESIAIRSVCYLPLTYDHRLVDGADAGRFLTTIKKRLE 569
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
3-417 1.27e-85

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 267.32  E-value: 1.27e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   3 IEQMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAGE 82
Cdd:PTZ00144   44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGA 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  83 PdsSEEAPKEEKNHSEEKSESliqtdqsnkaryspavlklsqehginlenvagsgaggritrkdilKAVESGTAAKAQVN 162
Cdd:PTZ00144  124 P--PAAAPAAAAAAKAEKTTP---------------------------------------------EKPKAAAPTPEPPA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 163 IENAEPKADTQMYEPNLGVKQKSSGSDMKIESgDREIPVTGIRKAIAQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKK 242
Cdd:PTZ00144  157 ASKPTPPAAAKPPEPAPAAKPPPTPVARADPR-ETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKD 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 243 EFRQKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIAREINEL 322
Cdd:PTZ00144  236 DFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADL 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 323 AEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMhGNMIAIRDRVNLCLSLDHRILDG 402
Cdd:PTZ00144  316 AEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYLALTYDHRLIDG 394
                         410
                  ....*....|....*
gi 1760234714 403 LVCGRFLARVKDILE 417
Cdd:PTZ00144  395 RDAVTFLKKIKDLIE 409
PDHac_trf_mito TIGR01349
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ...
6-417 1.22e-83

pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score. [Energy metabolism, Pyruvate dehydrogenase]


Pssm-ID: 273567 [Multi-domain]  Cd Length: 436  Bit Score: 262.81  E-value: 1.22e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   6 MKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEG-ETLPVGEVMCSI------- 77
Cdd:TIGR01349   2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGtKDVPVNKPIAVLveekedv 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  78 -----------QLAGEPDSSEEAPKEEKNHSEEKSESLIQ----------TDQSNKARY--SPAVLKLSQEHGINLENVA 134
Cdd:TIGR01349  82 adafknyklesSASPAPKPSEIAPTAPPSAPKPSPAPQKQspepsspaplSDKESGDRIfaSPLAKKLAKEKGIDLSAVA 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 135 GSGAGGRITRKDILKAVE-----SGTAAKAQVNIENAEPK-ADTQMYEpnlgvkqkssgsdmkiesgdrEIPVTGIRKAI 208
Cdd:TIGR01349 162 GSGPNGRIVKKDIESFVPqspasANQQAAATTPATYPAAApVSTGSYE---------------------DVPLSNIRKII 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 209 AQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFRQKegYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDIN 288
Cdd:TIGR01349 221 AKRLLESKQTIPHYYVSIECNVDKLLALRKELNAMASEV--YKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVD 298
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 289 ISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQV 368
Cdd:TIGR01349 299 ISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAV 378
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1760234714 369 ESIVKKPVVMHG--NMIAIRDRVNLCLSLDHRILDGLVCGRFLARVKDILE 417
Cdd:TIGR01349 379 GAVEDVAVVDNDeeKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLE 429
PDHac_trf_long TIGR01348
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ...
3-419 1.61e-71

pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase]


Pssm-ID: 273566 [Multi-domain]  Cd Length: 546  Bit Score: 234.77  E-value: 1.61e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   3 IEQMKMPQLGeSVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAGE 82
Cdd:TIGR01348 116 VQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  83 PDSSEEAPKEEKNHS-----------------EEKSESLIQTDQSNKARY---SPAVLKLSQEHGINLENVAGSGAGGRI 142
Cdd:TIGR01348 195 TPATAPAPASAQPAAqspaatqpepaaapaaaKAQAPAPQQAGTQNPAKVdhaAPAVRRLAREFGVDLSAVKGTGIKGRI 274
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 143 TRKDILKAVesgtaaKAQVNIENAEPkADTQMYEPNLGVKQKSSGSDMkiesGD-REIPVTGIRKAIAQNMVRSKHEIPH 221
Cdd:TIGR01348 275 LREDVQRFV------KEPSVRAQAAA-ASAAGGAPGALPWPNVDFSKF----GEvEEVDMSRIRKISGANLTRNWTMIPH 343
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 222 AWTMVEADVTNLVQYRDSLKKEFRqKEGYNLTYFAFFVKAVAQALKEFPEMNSMWA--GDKIVRKKDINISIAVSTDEAL 299
Cdd:TIGR01348 344 VTHFDKADITEMEAFRKQQNAAVE-KEGVKLTVLHILMKAVAAALKKFPKFNASLDlgGEQLILKKYVNIGVAVDTPNGL 422
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 300 YVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPvVMH 379
Cdd:TIGR01348 423 LVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEP-VWN 501
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1760234714 380 GNMIAIRDRVNLCLSLDHRILDGLVCGRFLARVKDILEHI 419
Cdd:TIGR01348 502 GKEFEPRLMLPLSLSYDHRVIDGADAARFTTYICESLADI 541
PLN02744 PLN02744
dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
2-421 1.47e-69

dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex


Pssm-ID: 215397 [Multi-domain]  Cd Length: 539  Bit Score: 229.35  E-value: 1.47e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   2 PIEQMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEG-ETLPVGEVMC----- 75
Cdd:PLN02744  111 PHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGaKEIKVGEVIAitvee 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  76 ------------SIQLAGEPDSSEEAPKEEKNHSEEKSESLIQTDQS---------NKARYSPAVLKLSQEHGINLENVA 134
Cdd:PLN02744  191 eedigkfkdykpSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASkpsappssgDRIFASPLARKLAEDNNVPLSSIK 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 135 GSGAGGRITRKDILKAVESGTaakaqvniENAEPKADTQMYEPNLGVKqkssgsdmkiesgdrEIPVTGIRKAIAQNMVR 214
Cdd:PLN02744  271 GTGPDGRIVKADIEDYLASGG--------KGATAPPSTDSKAPALDYT---------------DIPNTQIRKVTASRLLQ 327
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 215 SKHEIPHAWTMVEADVTNLVQYRDSLKKEFRQKEGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVS 294
Cdd:PLN02744  328 SKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQ 407
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 295 TDEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNTGS-FGSIQSMGIINHPQAAILQVESIVK 373
Cdd:PLN02744  408 TENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGpFGIKQFCAIINPPQSAILAVGSAEK 487
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 1760234714 374 KPVVMHGN-MIAIRDRVNLCLSLDHRILDGLVCGRFLARVKDILEHITS 421
Cdd:PLN02744  488 RVIPGSGPdQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPES 536
PLN02528 PLN02528
2-oxoisovalerate dehydrogenase E2 component
10-418 5.80e-67

2-oxoisovalerate dehydrogenase E2 component


Pssm-ID: 215289 [Multi-domain]  Cd Length: 416  Bit Score: 219.21  E-value: 5.80e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  10 QLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAGEPDSSEEA 89
Cdd:PLN02528    5 QTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHLRSDS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  90 PKEEKNHSEEKS--ESLIQTDQSNKARYSPAVLKLSQEHGINLENVAGSGAGGRITRKDILKAVESGTAAKAQVNIENAE 167
Cdd:PLN02528   85 LLLPTDSSNIVSlaESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEAT 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 168 PKADTQMYEpnlGVKQKSSGSDmkiesGDREIPVTGIRKAIAQNMVRSKhEIPHAWTMVEADVTNLVQYRDSLKKEFRQk 247
Cdd:PLN02528  165 IAEQEEFST---SVSTPTEQSY-----EDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENNTD- 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 248 EGYNLTYFAFFVKAVAQALKEFPEMNSMWAGD--KIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEK 325
Cdd:PLN02528  235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEEtsEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHL 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 326 VRSGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGNMIAIRDRVNLCLSLDHRILDGLVC 405
Cdd:PLN02528  315 AAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATV 394
                         410
                  ....*....|...
gi 1760234714 406 GRFLARVKDILEH 418
Cdd:PLN02528  395 ARFCNEWKSYVEK 407
PLN02226 PLN02226
2-oxoglutarate dehydrogenase E2 component
8-417 5.27e-64

2-oxoglutarate dehydrogenase E2 component


Pssm-ID: 177871 [Multi-domain]  Cd Length: 463  Bit Score: 212.69  E-value: 5.27e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   8 MPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAgEPDSSE 87
Cdd:PLN02226   96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKS-EDAASQ 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  88 EAPKEEKNHSEEKSESliqtdqsnkarySPAVLKLSQEhginlenvagsgaggritrkdilkaVESGTAAKaqvnienaE 167
Cdd:PLN02226  175 VTPSQKIPETTDPKPS------------PPAEDKQKPK-------------------------VESAPVAE--------K 209
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 168 PKADTQMYEPnlgvKQKSSGSDMKIESGDREIPVTGIRKAIAQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFRQK 247
Cdd:PLN02226  210 PKAPSSPPPP----KQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEK 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 248 EGYNLTYFAFFVKAVAQALKEFPEMNSMWAGDKIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEKVR 327
Cdd:PLN02226  286 HGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKAN 365
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 328 SGKLKSEDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGNMIAiRDRVNLCLSLDHRILDGLVCGR 407
Cdd:PLN02226  366 EGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVP-RPMMYVALTYDHRLIDGREAVY 444
                         410
                  ....*....|
gi 1760234714 408 FLARVKDILE 417
Cdd:PLN02226  445 FLRRVKDVVE 454
PRK11857 PRK11857
dihydrolipoamide acetyltransferase; Reviewed
112-417 1.11e-58

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237002 [Multi-domain]  Cd Length: 306  Bit Score: 194.24  E-value: 1.11e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 112 KARYSPAVLKLSQEHGINLENVAGSGAGGRITRKDILKAVESGTAAKAQV------NIENAEPKADTQMYEPNLGvkqks 185
Cdd:PRK11857    1 KILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAeaasvsSAQQAAKTAAPAAAPPKLE----- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 186 sgsdmkiesGDREiPVTGIRKAIAQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFRQKEGYNLTYFAFFVKAVAQA 265
Cdd:PRK11857   76 ---------GKRE-KVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIA 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 266 LKEFPEMNSMW--AGDKIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTV 343
Cdd:PRK11857  146 LKEFPIFAAKYdeATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTI 225
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1760234714 344 NNTGSFGSIQSMGIINHPQAAILQVESIVKKPVVMHGNMIAIRdRVNLCLSLDHRILDGLVCGRFLARVKDILE 417
Cdd:PRK11857  226 TNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGK-VMHLTVAADHRWIDGATIGRFASRVKELLE 298
PRK14843 PRK14843
dihydrolipoamide acetyltransferase; Provisional
110-417 3.97e-45

dihydrolipoamide acetyltransferase; Provisional


Pssm-ID: 184847 [Multi-domain]  Cd Length: 347  Bit Score: 159.69  E-value: 3.97e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 110 SNKARYSPAVLKLSQEHGINLENVAGSGAGGRITRKDILKAVESgtaakaqvNIENAEPKADTQmyepnlgVKQKSSGSD 189
Cdd:PRK14843   46 TNVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPE--------NIENDSIKSPAQ-------IEKVEEVPD 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 190 MKIESGDRE-IPVTGIRKAIAQNMVRSKHEIPHAWTMVEADVTNLVQYRDSLKKEFRQKEGYNLTYFAFFVKAVAQALKE 268
Cdd:PRK14843  111 NVTPYGEIErIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMK 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714 269 FPEMNSMWA--GDKIVRKKDINISIAVSTDEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKSEDMQGGTFTVNNT 346
Cdd:PRK14843  191 HPYINASLTedGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNL 270
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1760234714 347 GSFGsIQSMG-IINHPQAAILQVESIVKKPVVMHGNmIAIRDRVNLCLSLDHRILDGLVCGRFLARVKDILE 417
Cdd:PRK14843  271 GMFG-VQSFGpIINQPNSAILGVSSTIEKPVVVNGE-IVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIE 340
AceF COG0508
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component ...
1-77 6.88e-31

Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [Energy production and conversion]; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440274 [Multi-domain]  Cd Length: 77  Bit Score: 113.24  E-value: 6.88e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1760234714   1 MPIEqMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:COG0508     1 MAIE-IKMPDLGESMTEGTIVEWLVKEGDTVKEGDPLAEVETDKATMEVPAPAAGVLLEILVKEGDTVPVGAVIAVI 76
lipoyl_domain cd06849
Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. ...
5-77 2.46e-28

Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.


Pssm-ID: 133458 [Multi-domain]  Cd Length: 74  Bit Score: 106.33  E-value: 2.46e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1760234714   5 QMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:cd06849     2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74
PRK14875 PRK14875
acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
2-89 4.92e-23

acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional


Pssm-ID: 184875 [Multi-domain]  Cd Length: 371  Bit Score: 99.63  E-value: 4.92e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   2 PIEQMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQLAG 81
Cdd:PRK14875    1 SITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80

                  ....*...
gi 1760234714  82 EPDSSEEA 89
Cdd:PRK14875   81 VSDAEIDA 88
Biotin_lipoyl pfam00364
Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue ...
4-77 1.11e-18

Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognize the Glycine cleavage system H proteins.


Pssm-ID: 395290 [Multi-domain]  Cd Length: 73  Bit Score: 79.95  E-value: 1.11e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1760234714   4 EQMKMPQLGESVTEGtISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:pfam00364   1 TEIKSPMIGESVREG-VVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEGDTVEVGDPLAKI 73
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
193-416 1.78e-17

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 84.94  E-value: 1.78e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  193 ESGDREIPVTGIRKAIAQNMVRSKhEIPHAWTM----VEADVTNLVQYRDSLKK------EFRQKEGYnltyfaffvkAV 262
Cdd:PRK12270   112 AVEDEVTPLRGAAAAVAKNMDASL-EVPTATSVravpAKLLIDNRIVINNHLKRtrggkvSFTHLIGY----------AL 180
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  263 AQALKEFPEMNSMWAGDK----IVRKKDINISIAVST-----DEALYVPVIKFADEKTIKGIAREINELAEKVRSGKLKS 333
Cdd:PRK12270   181 VQALKAFPNMNRHYAEVDgkptLVTPAHVNLGLAIDLpkkdgSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTA 260
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714  334 EDMQGGTFTVNNTGSFGSIQSMGIINHPQAAILQVESIvKKPVVMHG------NMIAIRDRVNLCLSLDHRILDGLVCGR 407
Cdd:PRK12270   261 DDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAM-EYPAEFQGaseerlAELGISKVMTLTSTYDHRIIQGAESGE 339

                   ....*....
gi 1760234714  408 FLARVKDIL 416
Cdd:PRK12270   340 FLRTIHQLL 348
PRK11892 PRK11892
pyruvate dehydrogenase subunit beta; Provisional
1-118 1.96e-12

pyruvate dehydrogenase subunit beta; Provisional


Pssm-ID: 237011 [Multi-domain]  Cd Length: 464  Bit Score: 68.79  E-value: 1.96e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1760234714   1 MPIEqMKMPQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEG-ETLPVGEVMCSIQL 79
Cdd:PRK11892    1 MAIE-ILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGtEGVKVNTPIAVLLE 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1760234714  80 AGE---PDSSEEAPKEEKNHSEEKSESLIQTDQSNKARYSPA 118
Cdd:PRK11892   80 EGEsasDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPA 121
E3_binding pfam02817
e3 binding domain; This family represents a small domain of the E2 subunit of 2-oxo-acid ...
114-148 3.76e-11

e3 binding domain; This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit.


Pssm-ID: 460710 [Multi-domain]  Cd Length: 36  Bit Score: 57.31  E-value: 3.76e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1760234714 114 RYSPAVLKLSQEHGINLENVAGSGAGGRITRKDIL 148
Cdd:pfam02817   2 LASPAARKLARELGIDLSDVKGTGPGGRITKEDVE 36
Biotinyl_lipoyl_domains cd06663
Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the ...
9-77 7.05e-10

Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.


Pssm-ID: 133456 [Multi-domain]  Cd Length: 73  Bit Score: 55.14  E-value: 7.05e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1760234714   9 PQLGESVTEGTISSWLVKPGDRVNKYDPIAEVMTDKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:cd06663     5 PDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73
biotinyl_domain cd06850
The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all ...
18-77 8.48e-08

The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.


Pssm-ID: 133459 [Multi-domain]  Cd Length: 67  Bit Score: 48.95  E-value: 8.48e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1760234714  18 GTISSWLVKPGDRVNKYDPIA--EVMtdKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:cd06850     8 GTVVKVLVKEGDKVEAGQPLAvlEAM--KMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67
PRK09282 PRK09282
pyruvate carboxylase subunit B; Validated
18-78 8.29e-06

pyruvate carboxylase subunit B; Validated


Pssm-ID: 236449 [Multi-domain]  Cd Length: 592  Bit Score: 47.91  E-value: 8.29e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1760234714  18 GTISSWLVKPGDRVNKYDPIA--EVMtdKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSIQ 78
Cdd:PRK09282  531 GTVVKVKVKEGDKVKAGDTVLvlEAM--KMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591
PycA COG1038
Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the ...
18-72 1.96e-03

Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440660 [Multi-domain]  Cd Length: 1144  Bit Score: 40.45  E-value: 1.96e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1760234714   18 GTISSWLVKPGDRVNKYDPIA--EVMtdKVNAEVPSSFTGVIKDLIAAEGETLPVGE 72
Cdd:COG1038   1085 GTVVKVLVKEGDEVKKGDPLLtiEAM--KMETTITAPRDGTVKEVLVKEGDQVEAGD 1139
PRK14040 PRK14040
oxaloacetate decarboxylase subunit alpha;
12-77 8.97e-03

oxaloacetate decarboxylase subunit alpha;


Pssm-ID: 237592 [Multi-domain]  Cd Length: 593  Bit Score: 38.37  E-value: 8.97e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1760234714  12 GESVT---EGTISSWLVKPGDRVNKYDP--IAEVMtdKVNAEVPSSFTGVIKDLIAAEGETLPVGEVMCSI 77
Cdd:PRK14040  524 GEPVTaplAGNIFKVIVTEGQTVAEGDVllILEAM--KMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592
PRK12999 PRK12999
pyruvate carboxylase; Reviewed
18-72 9.02e-03

pyruvate carboxylase; Reviewed


Pssm-ID: 237263 [Multi-domain]  Cd Length: 1146  Bit Score: 38.58  E-value: 9.02e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1760234714   18 GTISSWLVKPGDRVNKYDPIA--EVMtdKVNAEVPSSFTGVIKDLIAAEGETLPVGE 72
Cdd:PRK12999  1085 GSVVTVLVKEGDEVKAGDPLAviEAM--KMETTITAPVDGTVKRVLVKAGDQVEAGD 1139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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