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Conserved domains on  [gi|1755771981|gb|QEZ50977|]
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right-handed parallel beta-helix repeat-containing protein [Pseudomonas protegens]

Protein Classification

right-handed parallel beta-helix repeat-containing protein( domain architecture ID 17609036)

right-handed parallel beta-helix repeat-containing protein that may share some similarity with pectate lyases, similar to Pseudomonas putida mannuronan C5-epimerase that catalyzes the epimerization of beta-D-mannuronate to alpha-L-guluronate during the synthesis of the linear polysaccharide alginate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
epimerase_AlgG super family cl45661
mannuronan 5-epimerase AlgG;
31-529 0e+00

mannuronan 5-epimerase AlgG;


The actual alignment was detected with superfamily member NF038177:

Pssm-ID: 468398 [Multi-domain]  Cd Length: 519  Bit Score: 1027.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981  31 ATAETAKAPIIAKELQQAKTYTVSSAPIEPLALAKPTLPDLSGYTAEAAAAKIVRSKPGKISVRRMMQEDALKDFIGGDN 110
Cdd:NF038177   21 VPAQPEAPRQLAKELQQAKTYTVTSAPIEPLEMDPPKLPDLSGYTAAAVEKKIVRKPGGKISVARMMQETALKEFTGGDN 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 111 KMAEWVVRQHGIPQAIFIDDGYVNLKELVGKLPKQYISETAPGVYLARLPIVVGRHGILEIDKQTQELRLSQEGGSFLVN 190
Cdd:NF038177  101 KLAEWVVRQHGIPQAIFIEDGYVNLGQLAKKVPKQYLSEVEPGVYVARLPIVVGQGGILEIDKKVKELRLSQERGAFLVN 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 191 DGQLFVRDTKVTGWREKDNGPATFRSPKEFRPFLLAWGGTETYIVNSTMASFGYANSKSYGVSISQYTPNMAKVLKRPEP 270
Cdd:NF038177  181 DGKLFVTDTKVTGWSEKNNGPAAYRTPKEFRPFLLSWGGTETYISNTKMASFGYNTSKSYGVSISQYTPNMAKRLKRPEP 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 271 TGWIVGSTFSDMWYGFYCYETRDFVLKGNTYKDNIVYGIDPHDRSHGLIIADNTVHGTKKKHGIIISREVNDSFIFNNRS 350
Cdd:NF038177  261 TGWIIDSEFSDMWYGFYCYETDDFVVKGNTYRDNIVYGIDPHDRSHRLIIAENTVYGTKKKHGIIVSREVNDSFIFNNRS 340

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 351 YDNHLSGLVIDRNSVNNLIAYNEIYRNHTDGITLYESADNLIYGNKVISNRRHGIRIRNSVNIRLYENIAMANGLTGVYG 430
Cdd:NF038177  341 YDNKLSGIVLDRNSVGNLVAYNEVYRNHTDGITLYESGDNLLWGNRVIANRRHGIRVRNSVNIRLYENLAMANGLTGVYG 420

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 431 HIKDLSDTDRDIKLDPFDAQVSLIVVGGELAANGSGPMSIDSPLSVELYRVSMLAPTKSSGISFSGVLGDRQDEILDLLV 510
Cdd:NF038177  421 HIKDLSDTDRDIALDPFDTKVSLIVVGGELSGNGSGPLSIDSPLSVELYRVSMLAPTKSSGISLNGVLGERQDEILDLLV 500

                         490
                  ....*....|....*....
gi 1755771981 511 RQQKAVLIDPVERQTELRD 529
Cdd:NF038177  501 RQQKAVLIDPVESQTELQD 519
 
Name Accession Description Interval E-value
epimerase_AlgG NF038177
mannuronan 5-epimerase AlgG;
31-529 0e+00

mannuronan 5-epimerase AlgG;


Pssm-ID: 468398 [Multi-domain]  Cd Length: 519  Bit Score: 1027.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981  31 ATAETAKAPIIAKELQQAKTYTVSSAPIEPLALAKPTLPDLSGYTAEAAAAKIVRSKPGKISVRRMMQEDALKDFIGGDN 110
Cdd:NF038177   21 VPAQPEAPRQLAKELQQAKTYTVTSAPIEPLEMDPPKLPDLSGYTAAAVEKKIVRKPGGKISVARMMQETALKEFTGGDN 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 111 KMAEWVVRQHGIPQAIFIDDGYVNLKELVGKLPKQYISETAPGVYLARLPIVVGRHGILEIDKQTQELRLSQEGGSFLVN 190
Cdd:NF038177  101 KLAEWVVRQHGIPQAIFIEDGYVNLGQLAKKVPKQYLSEVEPGVYVARLPIVVGQGGILEIDKKVKELRLSQERGAFLVN 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 191 DGQLFVRDTKVTGWREKDNGPATFRSPKEFRPFLLAWGGTETYIVNSTMASFGYANSKSYGVSISQYTPNMAKVLKRPEP 270
Cdd:NF038177  181 DGKLFVTDTKVTGWSEKNNGPAAYRTPKEFRPFLLSWGGTETYISNTKMASFGYNTSKSYGVSISQYTPNMAKRLKRPEP 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 271 TGWIVGSTFSDMWYGFYCYETRDFVLKGNTYKDNIVYGIDPHDRSHGLIIADNTVHGTKKKHGIIISREVNDSFIFNNRS 350
Cdd:NF038177  261 TGWIIDSEFSDMWYGFYCYETDDFVVKGNTYRDNIVYGIDPHDRSHRLIIAENTVYGTKKKHGIIVSREVNDSFIFNNRS 340

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 351 YDNHLSGLVIDRNSVNNLIAYNEIYRNHTDGITLYESADNLIYGNKVISNRRHGIRIRNSVNIRLYENIAMANGLTGVYG 430
Cdd:NF038177  341 YDNKLSGIVLDRNSVGNLVAYNEVYRNHTDGITLYESGDNLLWGNRVIANRRHGIRVRNSVNIRLYENLAMANGLTGVYG 420

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 431 HIKDLSDTDRDIKLDPFDAQVSLIVVGGELAANGSGPMSIDSPLSVELYRVSMLAPTKSSGISFSGVLGDRQDEILDLLV 510
Cdd:NF038177  421 HIKDLSDTDRDIALDPFDTKVSLIVVGGELSGNGSGPLSIDSPLSVELYRVSMLAPTKSSGISLNGVLGERQDEILDLLV 500

                         490
                  ....*....|....*....
gi 1755771981 511 RQQKAVLIDPVERQTELRD 529
Cdd:NF038177  501 RQQKAVLIDPVESQTELQD 519
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 284-429 3.31e-17

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 78.99  E-value: 3.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 284 YGFYCYETRDFVLKGNTYKDNIVYGIDPHDrSHGLIIADNTVHGTKKkHGIIISREVNdSFIFNNRSYDNHLSGLVIdRN 363
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNGGYGIYLRG-SSNATIENNTITNNGG-DGIEISGSSN-NTISNNTISNNGGGGIAL-RG 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1755771981 364 SVNNLIAYNEIYRNHTDGITLYESADNLIYGNKVISNRRHGIRI-RNSVNIRLYENIAMANGLTGVY 429
Cdd:pfam13229  77 SSNNLIENNTISNNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIeDSSNNVTISNNTVTNNKGAGIL 143
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 274-429 4.13e-15

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 76.49  E-value: 4.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 274 IVGSTFSDMWYGFYCYETRDFVLKGNTYKDNIVYGIDPHD-----RSHGLIIADNTVHGTKkkHGIIISReVNDSFIFNN 348
Cdd:COG3420   111 IENNRIENNLFGIYLEGSDNNVIRNNTISGNRDLRADRGNgihlwNSPGNVIEGNTISGGR--DGIYLEF-SDNNVIRNN 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 349 RSYDN----HLSglvidrNSVNNLIAYNEIYRNHTdGITLYESADNLIYGNKVISNRRHGIRIRNSVNIRLYENIAMANG 424
Cdd:COG3420   188 TIRNLrygiHYM------YSNDNLVEGNTFRDNGA-GIALMYSKGNTVRGNTILGNSGYGILLKESSDSVIEGNTISGNG 260


                  ....*
gi 1755771981 425 lTGVY 429
Cdd:COG3420   261 -KGIF 264
CASH smart00722
Domain present in carbohydrate binding proteins and sugar hydrolses;
292-408 2.07e-05

Domain present in carbohydrate binding proteins and sugar hydrolses;


Pssm-ID: 214788  Cd Length: 153  Bit Score: 44.80  E-value: 2.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981  292 RDFVLKGNTYKDNIVYGIDPHDRSHGLIIADNTV------HGTKKKHGIIISREVNDSFIFN---NRSYDNHLSGLVIDR 362
Cdd:smart00722  26 GGAVIDMGSGRGSNITINSNDVRVDGVTIGGDGNavtgiyVSASGDPVIQNDGTGKNLIIDNvtfNGTEINSGAGIVVTA 105

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1755771981  363 NSVNNLIaYNEIYRNHT---DGITLYESADNLIYGNKVISNRRHGIRIR 408
Cdd:smart00722 106 GSEGLFI-GNRIIGNYVatgDGNYLSDSSGGDLIGNRIYDNNRDGIAVV 153
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 381-420 2.43e-05

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 41.34  E-value: 2.43e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1755771981 381 GITLYESADNLIYGNKVISNrRHGIRIRNSVNIRLYENIA 420
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNN-SYGIYLYDSSNNTLSNNTA 39
 
Name Accession Description Interval E-value
epimerase_AlgG NF038177
mannuronan 5-epimerase AlgG;
31-529 0e+00

mannuronan 5-epimerase AlgG;


Pssm-ID: 468398 [Multi-domain]  Cd Length: 519  Bit Score: 1027.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981  31 ATAETAKAPIIAKELQQAKTYTVSSAPIEPLALAKPTLPDLSGYTAEAAAAKIVRSKPGKISVRRMMQEDALKDFIGGDN 110
Cdd:NF038177   21 VPAQPEAPRQLAKELQQAKTYTVTSAPIEPLEMDPPKLPDLSGYTAAAVEKKIVRKPGGKISVARMMQETALKEFTGGDN 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 111 KMAEWVVRQHGIPQAIFIDDGYVNLKELVGKLPKQYISETAPGVYLARLPIVVGRHGILEIDKQTQELRLSQEGGSFLVN 190
Cdd:NF038177  101 KLAEWVVRQHGIPQAIFIEDGYVNLGQLAKKVPKQYLSEVEPGVYVARLPIVVGQGGILEIDKKVKELRLSQERGAFLVN 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 191 DGQLFVRDTKVTGWREKDNGPATFRSPKEFRPFLLAWGGTETYIVNSTMASFGYANSKSYGVSISQYTPNMAKVLKRPEP 270
Cdd:NF038177  181 DGKLFVTDTKVTGWSEKNNGPAAYRTPKEFRPFLLSWGGTETYISNTKMASFGYNTSKSYGVSISQYTPNMAKRLKRPEP 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 271 TGWIVGSTFSDMWYGFYCYETRDFVLKGNTYKDNIVYGIDPHDRSHGLIIADNTVHGTKKKHGIIISREVNDSFIFNNRS 350
Cdd:NF038177  261 TGWIIDSEFSDMWYGFYCYETDDFVVKGNTYRDNIVYGIDPHDRSHRLIIAENTVYGTKKKHGIIVSREVNDSFIFNNRS 340

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 351 YDNHLSGLVIDRNSVNNLIAYNEIYRNHTDGITLYESADNLIYGNKVISNRRHGIRIRNSVNIRLYENIAMANGLTGVYG 430
Cdd:NF038177  341 YDNKLSGIVLDRNSVGNLVAYNEVYRNHTDGITLYESGDNLLWGNRVIANRRHGIRVRNSVNIRLYENLAMANGLTGVYG 420

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 431 HIKDLSDTDRDIKLDPFDAQVSLIVVGGELAANGSGPMSIDSPLSVELYRVSMLAPTKSSGISFSGVLGDRQDEILDLLV 510
Cdd:NF038177  421 HIKDLSDTDRDIALDPFDTKVSLIVVGGELSGNGSGPLSIDSPLSVELYRVSMLAPTKSSGISLNGVLGERQDEILDLLV 500

                         490
                  ....*....|....*....
gi 1755771981 511 RQQKAVLIDPVERQTELRD 529
Cdd:NF038177  501 RQQKAVLIDPVESQTELQD 519
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 284-429 3.31e-17

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 78.99  E-value: 3.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 284 YGFYCYETRDFVLKGNTYKDNIVYGIDPHDrSHGLIIADNTVHGTKKkHGIIISREVNdSFIFNNRSYDNHLSGLVIdRN 363
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNGGYGIYLRG-SSNATIENNTITNNGG-DGIEISGSSN-NTISNNTISNNGGGGIAL-RG 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1755771981 364 SVNNLIAYNEIYRNHTDGITLYESADNLIYGNKVISNRRHGIRI-RNSVNIRLYENIAMANGLTGVY 429
Cdd:pfam13229  77 SSNNLIENNTISNNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIeDSSNNVTISNNTVTNNKGAGIL 143
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 274-429 4.13e-15

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 76.49  E-value: 4.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 274 IVGSTFSDMWYGFYCYETRDFVLKGNTYKDNIVYGIDPHD-----RSHGLIIADNTVHGTKkkHGIIISReVNDSFIFNN 348
Cdd:COG3420   111 IENNRIENNLFGIYLEGSDNNVIRNNTISGNRDLRADRGNgihlwNSPGNVIEGNTISGGR--DGIYLEF-SDNNVIRNN 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 349 RSYDN----HLSglvidrNSVNNLIAYNEIYRNHTdGITLYESADNLIYGNKVISNRRHGIRIRNSVNIRLYENIAMANG 424
Cdd:COG3420   188 TIRNLrygiHYM------YSNDNLVEGNTFRDNGA-GIALMYSKGNTVRGNTILGNSGYGILLKESSDSVIEGNTISGNG 260


                  ....*
gi 1755771981 425 lTGVY 429
Cdd:COG3420   261 -KGIF 264
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 274-418 2.39e-14

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 70.51  E-value: 2.39e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 274 IVGSTFSDM-WYGFYCYETRDFVLKGNTYKDNIVYGIDPHDRSHGLIIaDNTVHGTKkkHGIIISREVNDSFIFNNRSYD 352
Cdd:pfam13229  13 IKNNTISNNgGYGIYLRGSSNATIENNTITNNGGDGIEISGSSNNTIS-NNTISNNG--GGGIALRGSSNNLIENNTISN 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1755771981 353 NHLSGLVIDRNSvNNLIAYNEIYRNHTDGITLYESADNL-IYGNKVISNRRHGIRIRNSV-NIRLYEN 418
Cdd:pfam13229  90 NGGAGIYLSDSS-NNTIENNIIHNNGGSGIVIEDSSNNVtISNNTVTNNKGAGILIVGGSsNNTVENN 156
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 274-413 8.56e-14

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 72.64  E-value: 8.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 274 IVGSTFSDMWYGFYCYETRDFVLKGNTYKDNIVyGIDPHDrSHGLIIADNTVHGTKKkHGIIIsREVNDSFIFNNRSYDN 353
Cdd:COG3420   184 IRNNTIRNLRYGIHYMYSNDNLVEGNTFRDNGA-GIALMY-SKGNTVRGNTILGNSG-YGILL-KESSDSVIEGNTISGN 259

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1755771981 354 HlSGLVIDrNSVNNLIAYNEIYRNHTdGITLY-ESADNLIYGNKVISNRRHGIRIRNSVNI 413
Cdd:COG3420   260 G-KGIFIY-NSNRNTIRGNLFAGNGI-GIHLTaGSEGNRIYGNNFIGNRTQVKYVGGRDNE 317
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 274-423 1.28e-10

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 63.01  E-value: 1.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 274 IVGSTFSDMWYGFYCYETRDFVLKGNTYKDNiVYGIDPHDrSHGLIIADNTVHGTKKkhGIII--SREVNdsfIFNNRSY 351
Cdd:COG3420   162 IEGNTISGGRDGIYLEFSDNNVIRNNTIRNL-RYGIHYMY-SNDNLVEGNTFRDNGA--GIALmySKGNT---VRGNTIL 234

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1755771981 352 DNHLSGLVIdRNSVNNLIAYNEIYRNhTDGITLYESADNLIYGNKVISNrRHGIRIR-NSVNIRLYENIAMAN 423
Cdd:COG3420   235 GNSGYGILL-KESSDSVIEGNTISGN-GKGIFIYNSNRNTIRGNLFAGN-GIGIHLTaGSEGNRIYGNNFIGN 304
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 274-414 1.84e-10

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 60.90  E-value: 1.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 274 IVGSTFSDMWYGFYCYETRDFVLKGNTYKDNiVYGIDPHDrSHGLIIADNTVHGTkKKHGIIISrEVNDSFIFNNRSYDN 353
Cdd:pfam05048  54 ITGNRISNLRYGIHLMNSNDNTISDNVFSGN-TAGIALMS-SSNNTLENNTISGN-TNYGILLS-DSSNNTISNNTISNN 129

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1755771981 354 HLSGLVIDrNSVNNLIAYNEIYRNHTDGITLYESADNLIYGNKVISNRRHgIRIRNSVNIR 414
Cdd:pfam05048 130 NGKGIFLY-NSDYNTITGNRITSNGIGIHFLAGSNGNTIYNNYFINNSEN-VKYVGTNDNY 188
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 285-429 4.10e-09

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 56.66  E-value: 4.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 285 GFYCYETRDFVLKGNTYkDNIVYGIDpHDRSHGLIIADNTVHGTKkkHGIIISrevndsfifnnrsydnhlsglvidrNS 364
Cdd:pfam05048  21 GIQLWNTEGNVISNNDI-INSRDGIY-LDASNNNTITGNRISNLR--YGIHLM-------------------------NS 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1755771981 365 VNNLIAYNEIYRNhTDGITLYESADNLIYGNKVISNRRHGIRIRNSVNIRLYENIAMANGLTGVY 429
Cdd:pfam05048  72 NDNTISDNVFSGN-TAGIALMSSSNNTLENNTISGNTNYGILLSDSSNNTISNNTISNNNGKGIF 135
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 224-397 9.21e-09

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 54.72  E-value: 9.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 224 LLAWGGTETYIVNSTMAsfgyaNSKSYGVSIsqytpnmakvlkRPEPTGWIVGSTFSDMWY-GFYCYETRDFVLKGNTYK 302
Cdd:pfam13229   3 ILLNGSSNATIKNNTIS-----NNGGYGIYL------------RGSSNATIENNTITNNGGdGIEISGSSNNTISNNTIS 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981 303 DNIVYGIDPHDrSHGLIIADNTVHGTKKkHGIIISREvNDSFIFNNRSYDNHLSGLVIDRNSVNNLIAYNEIYRNHTDGI 382
Cdd:pfam13229  66 NNGGGGIALRG-SSNNLIENNTISNNGG-AGIYLSDS-SNNTIENNIIHNNGGSGIVIEDSSNNVTISNNTVTNNKGAGI 142

                         170
                  ....*....|....*.
gi 1755771981 383 TLYE-SADNLIYGNKV 397
Cdd:pfam13229 143 LIVGgSSNNTVENNTF 158
CASH smart00722
Domain present in carbohydrate binding proteins and sugar hydrolses;
292-408 2.07e-05

Domain present in carbohydrate binding proteins and sugar hydrolses;


Pssm-ID: 214788  Cd Length: 153  Bit Score: 44.80  E-value: 2.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755771981  292 RDFVLKGNTYKDNIVYGIDPHDRSHGLIIADNTV------HGTKKKHGIIISREVNDSFIFN---NRSYDNHLSGLVIDR 362
Cdd:smart00722  26 GGAVIDMGSGRGSNITINSNDVRVDGVTIGGDGNavtgiyVSASGDPVIQNDGTGKNLIIDNvtfNGTEINSGAGIVVTA 105

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1755771981  363 NSVNNLIaYNEIYRNHT---DGITLYESADNLIYGNKVISNRRHGIRIR 408
Cdd:smart00722 106 GSEGLFI-GNRIIGNYVatgDGNYLSDSSGGDLIGNRIYDNNRDGIAVV 153
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 381-420 2.43e-05

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 41.34  E-value: 2.43e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1755771981 381 GITLYESADNLIYGNKVISNrRHGIRIRNSVNIRLYENIA 420
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNN-SYGIYLYDSSNNTLSNNTA 39
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 363-402 1.12e-04

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 39.80  E-value: 1.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1755771981 363 NSVNNLIAYNEIYRNhTDGITLYESADNLIYGNKVISNRR 402
Cdd:TIGR03804   6 SSSNNTLSNNTASNN-SYGIYLYDSSNNTLSNNTASNNGY 44
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 349-424 1.35e-03

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 40.48  E-value: 1.35e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1755771981 349 RSYDNHLSGLVIDRNSVNNLIAYNEIYRNHtDGITLYESADNLIYGNkVISNRRHGIRIRNSVNIRLYENIAMANG 424
Cdd:pfam05048  12 IYNGLSRGNGIQLWNTEGNVISNNDIINSR-DGIYLDASNNNTITGN-RISNLRYGIHLMNSNDNTISDNVFSGNT 85
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 365-429 5.44e-03

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 38.55  E-value: 5.44e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1755771981 365 VNNLIAYNEIYR----NHTDGITLYESADNLIYGNkVISNRRHGIRIRNSVNIRLyENIAMANGLTGVY 429
Cdd:pfam05048   1 VNNAISGDTIGIynglSRGNGIQLWNTEGNVISNN-DIINSRDGIYLDASNNNTI-TGNRISNLRYGIH 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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