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Conserved domains on  [gi|1730667819|gb|QEI20702|]
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hypothetical protein FY115_15895 [Cellvibrio japonicus]

Protein Classification

DNA-binding transcriptional response regulator( domain architecture ID 1000064)

DNA-binding transcriptional response regulator similar to NtrC family, containing REC, sigma-54 interaction, and a Fis-type DNA-binding domains, and to the two-component regulatory system HrpR/HrpS that regulates the activation of the sigma factor hrpL

Gene Ontology:  GO:0043565|GO:0006355|GO:0000160

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AtoC super family cl34427
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
 154-398 1.17e-20

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG2204:

Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 93.10  E-value: 1.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 154 DEIVRTIKRYQTRYRAIYVYGDQAYWIGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIE 233
Cdd:COG2204   108 EELLAAVERALERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVA 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 234 SDCREWQDAAVLSIL---------------QSLYTYAKGGTLFLRNLDALSEQGFA----VVRDYVARRRRYSGDPQGDV 294
Cdd:COG2204   188 VNCAAIPEELLESELfghekgaftgavarrIGKFELADGGTLFLDEIGEMPLALQAkllrVLQEREFERVGGNKPIPVDV 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 295 RLLFSLSR--REAVGAPGMVAWL--ADNAADLLLPGLQERRDDVRDLVRFFIHELG--HGIEFDFTADAWQLLEMLYWEE 368
Cdd:COG2204   268 RVIAATNRdlEELVEEGRFREDLyyRLNVFPIELPPLRERREDIPLLARHFLARFAaeLGKPVKLSPEALEALLAYDWPG 347

                         250       260       270
                  ....*....|....*....|....*....|
gi 1730667819 369 NVEQLKRLVQTLTLVSQEPMIGIDLLENYL 398
Cdd:COG2204   348 NVRELENVIERAVILADGEVITAEDLPEAL 377
 
Name Accession Description Interval E-value
AtoC COG2204
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
 154-398 1.17e-20

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 93.10  E-value: 1.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 154 DEIVRTIKRYQTRYRAIYVYGDQAYWIGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIE 233
Cdd:COG2204   108 EELLAAVERALERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVA 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 234 SDCREWQDAAVLSIL---------------QSLYTYAKGGTLFLRNLDALSEQGFA----VVRDYVARRRRYSGDPQGDV 294
Cdd:COG2204   188 VNCAAIPEELLESELfghekgaftgavarrIGKFELADGGTLFLDEIGEMPLALQAkllrVLQEREFERVGGNKPIPVDV 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 295 RLLFSLSR--REAVGAPGMVAWL--ADNAADLLLPGLQERRDDVRDLVRFFIHELG--HGIEFDFTADAWQLLEMLYWEE 368
Cdd:COG2204   268 RVIAATNRdlEELVEEGRFREDLyyRLNVFPIELPPLRERREDIPLLARHFLARFAaeLGKPVKLSPEALEALLAYDWPG 347

                         250       260       270
                  ....*....|....*....|....*....|
gi 1730667819 369 NVEQLKRLVQTLTLVSQEPMIGIDLLENYL 398
Cdd:COG2204   348 NVRELENVIERAVILADGEVITAEDLPEAL 377
Sigma54_activ_2 pfam14532
Sigma-54 interaction domain;
180-303 5.59e-12

Sigma-54 interaction domain;


Pssm-ID: 434021 [Multi-domain]  Cd Length: 138  Bit Score: 62.75  E-value: 5.59e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCrewqdaavLSILQSLYTYAKGGT 259
Cdd:pfam14532   1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYL--------AHAPLELLEQAKGGT 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1730667819 260 LFLRNLDALSEQGFAVVRDYVARRRRYSgdpqgdVRLLFSLSRR 303
Cdd:pfam14532  73 LYLKDIADLSKALQKGLLLLLAKAEGYR------VRLVCTSSKD 110
PEP_resp_reg TIGR02915
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ...
 180-406 1.85e-08

PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]


Pssm-ID: 274348 [Multi-domain]  Cd Length: 445  Bit Score: 55.91  E-value: 1.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCREWQDAAVLSIL----QSLYT-- 253
Cdd:TIGR02915 142 ITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELfgyeKGAFTga 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 254 ---------YAKGGTLFLRNLD----ALSEQGFAVVRDYVARRRRYSGDPQGDVRLLFSLSR--REAVGAPGMVAWLADN 318
Cdd:TIGR02915 222 vkqtlgkieYAHGGTLFLDEIGdlplNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQdlKRMIAEGTFREDLFYR 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 319 AAD--LLLPGLQERRDDVRDLVRFFIH----ELGHGIEfDFTADAWQLLEMLYWEENVEQLKRLVQTLTLVSQEPMI--- 389
Cdd:TIGR02915 302 IAEisITIPPLRSRDGDAVLLANAFLErfarELKRKTK-GFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQItae 380

                         250
                  ....*....|....*....
gi 1730667819 390 --GIDLLENYLPPQDFYLR 406
Cdd:TIGR02915 381 dlGLDARERAETPLEVNLR 399
PRK10365 PRK10365
sigma-54-dependent response regulator transcription factor ZraR;
180-378 2.25e-08

sigma-54-dependent response regulator transcription factor ZraR;


Pssm-ID: 182412 [Multi-domain]  Cd Length: 441  Bit Score: 55.81  E-value: 2.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCREWQDAAVLSIL----------- 248
Cdd:PRK10365  142 VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELfghekgaftga 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 249 ----QSLYTYAKGGTLFLRNLDALSE-QGFAVVRDYVARRRRYSGDPQG---DVRLLFSLSRREA----VGAPGMVAWLA 316
Cdd:PRK10365  222 dkrrEGRFVEADGGTLFLDEIGDISPmMQVRLLRAIQEREVQRVGSNQTisvDVRLIAATHRDLAaevnAGRFRQDLYYR 301

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1730667819 317 DNAADLLLPGLQERRDDVRDLVRFFIH---ELGHGIEFDFTADAWQLLEMLYWEENVEQLKRLVQ 378
Cdd:PRK10365  302 LNVVAIEVPSLRQRREDIPLLAGHFLQrfaERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366
 
Name Accession Description Interval E-value
AtoC COG2204
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
 154-398 1.17e-20

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 93.10  E-value: 1.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 154 DEIVRTIKRYQTRYRAIYVYGDQAYWIGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIE 233
Cdd:COG2204   108 EELLAAVERALERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVA 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 234 SDCREWQDAAVLSIL---------------QSLYTYAKGGTLFLRNLDALSEQGFA----VVRDYVARRRRYSGDPQGDV 294
Cdd:COG2204   188 VNCAAIPEELLESELfghekgaftgavarrIGKFELADGGTLFLDEIGEMPLALQAkllrVLQEREFERVGGNKPIPVDV 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 295 RLLFSLSR--REAVGAPGMVAWL--ADNAADLLLPGLQERRDDVRDLVRFFIHELG--HGIEFDFTADAWQLLEMLYWEE 368
Cdd:COG2204   268 RVIAATNRdlEELVEEGRFREDLyyRLNVFPIELPPLRERREDIPLLARHFLARFAaeLGKPVKLSPEALEALLAYDWPG 347

                         250       260       270
                  ....*....|....*....|....*....|
gi 1730667819 369 NVEQLKRLVQTLTLVSQEPMIGIDLLENYL 398
Cdd:COG2204   348 NVRELENVIERAVILADGEVITAEDLPEAL 377
Sigma54_activ_2 pfam14532
Sigma-54 interaction domain;
180-303 5.59e-12

Sigma-54 interaction domain;


Pssm-ID: 434021 [Multi-domain]  Cd Length: 138  Bit Score: 62.75  E-value: 5.59e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCrewqdaavLSILQSLYTYAKGGT 259
Cdd:pfam14532   1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYL--------AHAPLELLEQAKGGT 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1730667819 260 LFLRNLDALSEQGFAVVRDYVARRRRYSgdpqgdVRLLFSLSRR 303
Cdd:pfam14532  73 LYLKDIADLSKALQKGLLLLLAKAEGYR------VRLVCTSSKD 110
AcoR COG3284
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
119-394 3.41e-11

Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];


Pssm-ID: 442514 [Multi-domain]  Cd Length: 625  Bit Score: 64.92  E-value: 3.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 119 QQRLGYLLAQPRTDYSHVGDAALDARLSQGLQAVADEIVRTIKRYQTRYRAIYvygDQAYWIGNSRVLRQLDQRIEKLAH 198
Cdd:COG3284   266 GLDLEALPDGARRAPASPRPLRLRDGRRLGALLRLRPARRAARAAPAGAPAPA---ALAALAGGDPAMRRALRRARRLAD 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 199 LNVPVVIRGDKGTGKVIAARSLH--CQRFSDivPFIESDCREWQDAAVLSIL----------------QSLYTYAKGGTL 260
Cdd:COG3284   343 RDIPVLILGETGTGKELFARAIHaaSPRADG--PFVAVNCAAIPEELIESELfgyepgaftgarrkgrPGKIEQADGGTL 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 261 FLRNLDALSEQGFAVVRDYVARRRRY---SGDPQ-GDVRLLFSLSR--REAVGAPGMVAWLAD--NAADLLLPGLQErRD 332
Cdd:COG3284   421 FLDEIGDMPLALQARLLRVLQEREVTplgGTKPIpVDVRLIAATHRdlRELVAAGRFREDLYYrlNGLTLTLPPLRE-RE 499

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1730667819 333 DVRDLVRFFIHELGHGI-EFDFTADAWQLLEMLYWEENVEQLKRLVQTLTLVSQEPMIGIDLL 394
Cdd:COG3284   500 DLPALIEHLLRELAAGRgPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVEDL 562
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 180-400 1.64e-09

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 59.40  E-value: 1.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLH-----CQRfsdivPFIESDCrewqdAAV-LSILQS-LY 252
Cdd:COG3829   141 IGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHnasprRDG-----PFVAVNC-----AAIpENLLESeLF 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 253 TYAKG-------------------GTLFL------------RNLDALSEQGFavvrdyvaRR------RRYsgdpqgDVR 295
Cdd:COG3829   211 GYEKGaftgakkggkpglfeladgGTLFLdeigemplslqaKLLRVLQEKEV--------RRvggtkpIPV------DVR 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 296 LLFSLSR--REAVgapgmvawlADNA--ADLL---------LPGLQERRDDVRDLVRFFIHELG--HGIEF-DFTADAWQ 359
Cdd:COG3829   277 IIAATNRdlEEMV---------EEGRfrEDLYyrlnvipihIPPLRERKEDIPLLAEHFLEKFNkkYGKNIkGISPEALE 347

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1730667819 360 LLeMLY-WEENVEQLKRLVQTLTLVSQEPMIGIDLLENYLPP 400
Cdd:COG3829   348 LL-LAYdWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLE 388
PEP_resp_reg TIGR02915
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ...
 180-406 1.85e-08

PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]


Pssm-ID: 274348 [Multi-domain]  Cd Length: 445  Bit Score: 55.91  E-value: 1.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCREWQDAAVLSIL----QSLYT-- 253
Cdd:TIGR02915 142 ITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELfgyeKGAFTga 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 254 ---------YAKGGTLFLRNLD----ALSEQGFAVVRDYVARRRRYSGDPQGDVRLLFSLSR--REAVGAPGMVAWLADN 318
Cdd:TIGR02915 222 vkqtlgkieYAHGGTLFLDEIGdlplNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQdlKRMIAEGTFREDLFYR 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 319 AAD--LLLPGLQERRDDVRDLVRFFIH----ELGHGIEfDFTADAWQLLEMLYWEENVEQLKRLVQTLTLVSQEPMI--- 389
Cdd:TIGR02915 302 IAEisITIPPLRSRDGDAVLLANAFLErfarELKRKTK-GFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQItae 380

                         250
                  ....*....|....*....
gi 1730667819 390 --GIDLLENYLPPQDFYLR 406
Cdd:TIGR02915 381 dlGLDARERAETPLEVNLR 399
Sigma54_activat pfam00158
Sigma-54 interaction domain;
180-262 1.91e-08

Sigma-54 interaction domain;


Pssm-ID: 425491 [Multi-domain]  Cd Length: 168  Bit Score: 53.56  E-value: 1.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHcqRFSDIV--PFIESDCrewqdAAV-LSILQS-LYTYA 255
Cdd:pfam00158   2 IGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIH--QLSPRAdgPFVAVNC-----AAIpEELLESeLFGHE 74

                          90       100
                  ....*....|....*....|....*
gi 1730667819 256 KG------------------GTLFL 262
Cdd:pfam00158  75 KGaftgadsdrkglfeladgGTLFL 99
PRK10365 PRK10365
sigma-54-dependent response regulator transcription factor ZraR;
180-378 2.25e-08

sigma-54-dependent response regulator transcription factor ZraR;


Pssm-ID: 182412 [Multi-domain]  Cd Length: 441  Bit Score: 55.81  E-value: 2.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCREWQDAAVLSIL----------- 248
Cdd:PRK10365  142 VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELfghekgaftga 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 249 ----QSLYTYAKGGTLFLRNLDALSE-QGFAVVRDYVARRRRYSGDPQG---DVRLLFSLSRREA----VGAPGMVAWLA 316
Cdd:PRK10365  222 dkrrEGRFVEADGGTLFLDEIGDISPmMQVRLLRAIQEREVQRVGSNQTisvDVRLIAATHRDLAaevnAGRFRQDLYYR 301

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1730667819 317 DNAADLLLPGLQERRDDVRDLVRFFIH---ELGHGIEFDFTADAWQLLEMLYWEENVEQLKRLVQ 378
Cdd:PRK10365  302 LNVVAIEVPSLRQRREDIPLLAGHFLQrfaERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366
PRK11361 PRK11361
acetoacetate metabolism transcriptional regulator AtoC;
149-401 6.14e-08

acetoacetate metabolism transcriptional regulator AtoC;


Pssm-ID: 183099 [Multi-domain]  Cd Length: 457  Bit Score: 54.47  E-value: 6.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 149 LQAVADEIVRTIKRYQTRYRAIYVygdqaywIGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDI 228
Cdd:PRK11361  122 LQSMKKEIRHLHQALSTSWQWGHI-------LTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAK 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 229 VPFIESDCREWQDAAVLSIL---------------QSLYTYAKGGTLFLRNLD----ALSEQGFAVVRDYVARRRRYSGD 289
Cdd:PRK11361  195 GPFIKVNCAALPESLLESELfghekgaftgaqtlrQGLFERANEGTLLLDEIGemplVLQAKLLRILQEREFERIGGHQT 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 290 PQGDVRLLFSLSR------REAVGAPGMVAWLadNAADLLLPGLQERRDDVRDLVRFFIHELGHG-----IEFDftADAW 358
Cdd:PRK11361  275 IKVDIRIIAATNRdlqamvKEGTFREDLFYRL--NVIHLILPPLRDRREDISLLANHFLQKFSSEnqrdiIDID--PMAM 350

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1730667819 359 QLLEMLYWEENVEQLKRLVQTLTLVSQEPMIgidlLENYLPPQ 401
Cdd:PRK11361  351 SLLTAWSWPGNIRELSNVIERAVVMNSGPII----FSEDLPPQ 389
PRK15115 PRK15115
response regulator GlrR; Provisional
 185-398 1.29e-07

response regulator GlrR; Provisional


Pssm-ID: 185070 [Multi-domain]  Cd Length: 444  Bit Score: 53.30  E-value: 1.29e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 185 VLRQLDQrIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCREWQDAAVLSIL---------------Q 249
Cdd:PRK15115  143 MLRLLEQ-ARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELfghargaftgavsnrE 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 250 SLYTYAKGGTLFLRNLD----ALSEQGFAVVRDYVARRRRYSGDPQGDVRLLfSLSRREAVGAPGMVAWLAD-----NAA 320
Cdd:PRK15115  222 GLFQAAEGGTLFLDEIGdmpaPLQVKLLRVLQERKVRPLGSNRDIDIDVRII-SATHRDLPKAMARGEFREDlyyrlNVV 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 321 DLLLPGLQERRDDVRDLVRffiHELGHGIEF------DFTADAWQLLEMLYWEENVEQLKRLVQTLTLVSQEPMIGIDLL 394
Cdd:PRK15115  301 SLKIPALAERTEDIPLLAN---HLLRQAAERhkpfvrAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALV 377


                  ....
gi 1730667819 395 ENYL 398
Cdd:PRK15115  378 EQAL 381
glnG PRK10923
nitrogen regulation protein NR(I); Provisional
 154-389 1.86e-07

nitrogen regulation protein NR(I); Provisional


Pssm-ID: 182842 [Multi-domain]  Cd Length: 469  Bit Score: 52.95  E-value: 1.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 154 DEIVRTIKRYQTRY------RAIYVYGDQAYWIGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSD 227
Cdd:PRK10923  109 DEAVALVERAISHYqeqqqpRNIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 228 IVPF------------IESDCREWQDAAVL---SILQSLYTYAKGGTLFL------------RNLDALSEQGFAVVRDYV 280
Cdd:PRK10923  189 KAPFialnmaaipkdlIESELFGHEKGAFTganTIRQGRFEQADGGTLFLdeigdmpldvqtRLLRVLADGQFYRVGGYA 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 281 ARRRrysgdpqgDVRLLFS----LSRREAVGAPGMVAWLADNAADLLLPGLQERRDDVRDLVRFFIHELGH--GIEFD-F 353
Cdd:PRK10923  269 PVKV--------DVRIIAAthqnLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARelGVEAKlL 340

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1730667819 354 TADAWQLLEMLYWEENVEQLKRLVQTLTLV--SQEPMI 389
Cdd:PRK10923  341 HPETEAALTRLAWPGNVRQLENTCRWLTVMaaGQEVLI 378
PRK15424 PRK15424
propionate catabolism operon regulatory protein PrpR; Provisional
 150-399 3.76e-07

propionate catabolism operon regulatory protein PrpR; Provisional


Pssm-ID: 237963 [Multi-domain]  Cd Length: 538  Bit Score: 52.03  E-value: 3.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 150 QAVAD--EIVRTIKRYQTRY------RAIYVYGDqayWIGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLH 221
Cdd:PRK15424  187 QAFEDalDMTRMTLRHNTHYatrnalRTRYVLGD---LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIH 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 222 CQRFSDIV--------PFIESDCrewqDAAVLSILQS-LYTY-------------------AKGGTLFL----------- 262
Cdd:PRK15424  264 REYFARHDarqgkkshPFVAVNC----GAIAESLLEAeLFGYeegaftgsrrggraglfeiAHGGTLFLdeigemplplq 339

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 263 -RNLDALSEQgfAVVRdyVARRRrysgdPQG-DVRL----LFSLSRREAVGA--PGMVAWLAdnAADLLLPGLQERRDDV 334
Cdd:PRK15424  340 tRLLRVLEEK--EVTR--VGGHQ-----PVPvDVRVisatHCDLEEDVRQGRfrRDLFYRLS--ILRLQLPPLRERVADI 408

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1730667819 335 RDLVRFFIHELGHGIEFDFTADAWQ-------LLEMLYWEENVEQLKRLVQTLTL---VSQEPMIGIDLLENYLP 399
Cdd:PRK15424  409 LPLAESFLKQSLAALSAPFSAALRQglqqcetLLLHYDWPGNVRELRNLMERLALflsVEPTPDLTPQFLQLLLP 483
FhlA COG3604
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ...
 203-396 3.95e-07

FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 442823 [Multi-domain]  Cd Length: 338  Bit Score: 51.39  E-value: 3.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 203 VVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCrewqdAAvlsILQSLytyakggtlflrnLDALSEQGFAVVRDYVAR 282
Cdd:COG3604   118 VAILGETGTGKELVANAIHELSPRADKPFVKVNC-----AA---LPESL-------------LESLQEGEFERVGGDETI 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 283 RrrysgdpqGDVRLLFSLSR--REAVGAPGMVAWLAD--NAADLLLPGLQERRDDVRDLVRFFIH----ELGHGIEfDFT 354
Cdd:COG3604   177 K--------VDVRIIAATNRdlEEEVAEGRFREDLYYrlNVFPIRLPPLRERREDIPLLAEHFLEkfsrRLGKPIL-RLS 247

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1730667819 355 ADAWQLLEMLYWEENVEQLKRLVQTLTLVSQEPMIGIDLLEN 396
Cdd:COG3604   248 PEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAP 289
PRK10820 PRK10820
transcriptional regulator TyrR;
186-405 9.84e-05

transcriptional regulator TyrR;


Pssm-ID: 236769 [Multi-domain]  Cd Length: 520  Bit Score: 44.29  E-value: 9.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 186 LRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLHCQRFSDIVPFIESDCREWQDAAVLSIL---------------QS 250
Cdd:PRK10820  213 MRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELfghapgaypnalegkKG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 251 LYTYAKGGTLFLRNLDALSEQGFA----VVRDYVARRRRYSGDPQGDVRL-------LFSLSRReavgapGMvaWLAD-- 317
Cdd:PRK10820  293 FFEQANGGSVLLDEIGEMSPRMQAkllrFLNDGTFRRVGEDHEVHVDVRVicatqknLVELVQK------GE--FREDly 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 318 ---NAADLLLPGLQERRDDVRDLVRFFIHELG--HGIEF-DFTADAWQLLEMLYWEENVEQLKR-LVQTLTlvsqepmig 390
Cdd:PRK10820  365 yrlNVLTLNLPPLRDRPQDIMPLTELFVARFAdeQGVPRpKLAADLNTVLTRYGWPGNVRQLKNaIYRALT--------- 435

                         250
                  ....*....|....*.
gi 1730667819 391 idLLENY-LPPQDFYL 405
Cdd:PRK10820  436 --QLEGYeLRPQDILL 449
TyrR COG3283
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ...
 180-374 4.18e-04

Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];


Pssm-ID: 442513 [Multi-domain]  Cd Length: 514  Bit Score: 42.48  E-value: 4.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSlhCQRFSD--IVPFIESDCREWQDAAVLSIL--------- 248
Cdd:COG3283   207 VASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARA--CHLASPrgDKPFLALNCAALPDDVAESELfgyapgafg 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 249 ------QSLYTYAKGGTLFLRNLDALSEQGFA----VVRDYVARRrrySGDPQG---DVRL-------LFSLSR----RE 304
Cdd:COG3283   285 naregkKGLFEQANGGTVFLDEIGEMSPQLQAkllrFLQDGTFRR---VGEEQEvkvDVRVicatqkdLAELVQegefRE 361

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730667819 305 avgapgmvawlaD-----NAADLLLPGLQERRDDVRDLVRFFI----HELghGIE-FDFTADAWQLLEMLYWEENVEQLK 374
Cdd:COG3283   362 ------------DlyyrlNVLTLTLPPLRERKSDILPLAEHFVarfsQQL--GRPrPRLSPDLVDFLQSYPWPGNVRQLE 427
ChlI COG1239
Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];
203-237 1.14e-03

Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];


Pssm-ID: 440852 [Multi-domain]  Cd Length: 344  Bit Score: 40.89  E-value: 1.14e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1730667819 203 VVIRGDKGTGKVIAARSLHcqrfsDIVPFIE--SDCR 237
Cdd:COG1239    33 VLIRGEKGTAKSTAVRALA-----ALLPPIEvvKGCP 64
PRK05022 PRK05022
nitric oxide reductase transcriptional regulator NorR;
180-221 2.85e-03

nitric oxide reductase transcriptional regulator NorR;


Pssm-ID: 235331 [Multi-domain]  Cd Length: 509  Bit Score: 39.77  E-value: 2.85e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1730667819 180 IGNSRVLRQLDQRIEKLAHLNVPVVIRGDKGTGKVIAARSLH 221
Cdd:PRK05022  190 IGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIH 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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