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Conserved domains on  [gi|1721641862|gb|QEC61275|]
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hypothetical protein FRZ54_01315 [Mucilaginibacter ginsenosidivorans]

Protein Classification

carboxypeptidase-like regulatory domain-containing protein( domain architecture ID 10616715)

carboxypeptidase-like regulatory domain-containing protein is an uncharacterized protein that may be lacking the TonB-dependent receptor plug domain and TonB-dependent receptor domain that are often found associated with the regulatory domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 270-353 2.07e-13

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


:

Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 65.69  E-value: 2.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862 270 LTGIITSAGGNGPLVGAIVKIAGSNFGAVTDANGRFVLHDVPEKR-SLIVGYLGYDTKKVNLTGTGDS---INVALTPAG 345
Cdd:pfam13715   1 ISGTVVDENTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTyTLVVSFVGYKTQEKKVTVSNDNtldVNFLLKEDA 80


                  ....*...
gi 1721641862 346 SALkEEVT 353
Cdd:pfam13715  81 LLL-DEVV 87
PRK07033 super family cl32184
DotU family type VI secretion system protein;
56-137 1.19e-03

DotU family type VI secretion system protein;


The actual alignment was detected with superfamily member PRK07033:

Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 41.19  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862  56 AELEQRLQD--RTDKKVRPmWIPLWAAASV------LIIIGVGIWLATKDEPAKKNViaEAIKPKkeEKQAVRAAPAPAT 127
Cdd:PRK07033  208 PALSPHWRDvpVARVLLRP-TVPLWVCVALalllalLLFIGLRWRLADRSDPVFAAI--YALRLP--VVQIARPAPQPPP 282

                          90
                  ....*....|
gi 1721641862 128 SPYIADTLKP 137
Cdd:PRK07033  283 APRLAKFLEP 292
RsiW super family cl26167
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
3-88 4.08e-03

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


The actual alignment was detected with superfamily member COG5662:

Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 37.90  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862   3 KHKDDISQIRKYLDGQLDARAMHQLERGALDDPFLADALEGYE-------AAGRDQKNNMAELEQRLQDRTDKKVRPMWi 75
Cdd:COG5662     2 TCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRrlraalrAALAPDEPVPARLRARVMARLPRRRRRRW- 80

                          90
                  ....*....|...
gi 1721641862  76 pLWAAASVLIIIG 88
Cdd:COG5662    81 -RAVAAADLSAAG 92
 
Name Accession Description Interval E-value
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 270-353 2.07e-13

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 65.69  E-value: 2.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862 270 LTGIITSAGGNGPLVGAIVKIAGSNFGAVTDANGRFVLHDVPEKR-SLIVGYLGYDTKKVNLTGTGDS---INVALTPAG 345
Cdd:pfam13715   1 ISGTVVDENTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTyTLVVSFVGYKTQEKKVTVSNDNtldVNFLLKEDA 80


                  ....*...
gi 1721641862 346 SALkEEVT 353
Cdd:pfam13715  81 LLL-DEVV 87
PRK07033 PRK07033
DotU family type VI secretion system protein;
56-137 1.19e-03

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 41.19  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862  56 AELEQRLQD--RTDKKVRPmWIPLWAAASV------LIIIGVGIWLATKDEPAKKNViaEAIKPKkeEKQAVRAAPAPAT 127
Cdd:PRK07033  208 PALSPHWRDvpVARVLLRP-TVPLWVCVALalllalLLFIGLRWRLADRSDPVFAAI--YALRLP--VVQIARPAPQPPP 282

                          90
                  ....*....|
gi 1721641862 128 SPYIADTLKP 137
Cdd:PRK07033  283 APRLAKFLEP 292
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
3-88 4.08e-03

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 37.90  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862   3 KHKDDISQIRKYLDGQLDARAMHQLERGALDDPFLADALEGYE-------AAGRDQKNNMAELEQRLQDRTDKKVRPMWi 75
Cdd:COG5662     2 TCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRrlraalrAALAPDEPVPARLRARVMARLPRRRRRRW- 80

                          90
                  ....*....|...
gi 1721641862  76 pLWAAASVLIIIG 88
Cdd:COG5662    81 -RAVAAADLSAAG 92
 
Name Accession Description Interval E-value
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 270-353 2.07e-13

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 65.69  E-value: 2.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862 270 LTGIITSAGGNGPLVGAIVKIAGSNFGAVTDANGRFVLHDVPEKR-SLIVGYLGYDTKKVNLTGTGDS---INVALTPAG 345
Cdd:pfam13715   1 ISGTVVDENTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTyTLVVSFVGYKTQEKKVTVSNDNtldVNFLLKEDA 80


                  ....*...
gi 1721641862 346 SALkEEVT 353
Cdd:pfam13715  81 LLL-DEVV 87
CarboxypepD_reg pfam13620
Carboxypeptidase regulatory-like domain;
269-341 4.45e-06

Carboxypeptidase regulatory-like domain;


Pssm-ID: 433354 [Multi-domain]  Cd Length: 81  Bit Score: 44.58  E-value: 4.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862 269 TLTGIITSAGGNgPLVGAIVKIA----GSNFGAVTDANGRFVLHDVPEKR-SLIVGYLGYDT---KKVNLT-GTGDSINV 339
Cdd:pfam13620   1 TISGTVTDPSGA-PVPGATVTVTntdtGTVRTTTTDADGRYRFPGLPPGTyTVTVSAPGFKTatrTGVTVTaGQTTTLDV 79


                  ..
gi 1721641862 340 AL 341
Cdd:pfam13620  80 TL 81
PRK07033 PRK07033
DotU family type VI secretion system protein;
56-137 1.19e-03

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 41.19  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862  56 AELEQRLQD--RTDKKVRPmWIPLWAAASV------LIIIGVGIWLATKDEPAKKNViaEAIKPKkeEKQAVRAAPAPAT 127
Cdd:PRK07033  208 PALSPHWRDvpVARVLLRP-TVPLWVCVALalllalLLFIGLRWRLADRSDPVFAAI--YALRLP--VVQIARPAPQPPP 282

                          90
                  ....*....|
gi 1721641862 128 SPYIADTLKP 137
Cdd:PRK07033  283 APRLAKFLEP 292
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
3-88 4.08e-03

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 37.90  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721641862   3 KHKDDISQIRKYLDGQLDARAMHQLERGALDDPFLADALEGYE-------AAGRDQKNNMAELEQRLQDRTDKKVRPMWi 75
Cdd:COG5662     2 TCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRrlraalrAALAPDEPVPARLRARVMARLPRRRRRRW- 80

                          90
                  ....*....|...
gi 1721641862  76 pLWAAASVLIIIG 88
Cdd:COG5662    81 -RAVAAADLSAAG 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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