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Conserved domains on  [gi|1707812228|gb|QDO70482|]
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ATP synthase F1 subunit epsilon [Bacteroides intestinalis]

Protein Classification

F0F1 ATP synthase subunit epsilon( domain architecture ID 11417490)

F0F1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 4-81 3.96e-24

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


:

Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 87.55  E-value: 3.96e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILAD 78
 
Name Accession Description Interval E-value
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 4-81 3.96e-24

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 87.55  E-value: 3.96e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILAD 78
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 4-81 4.95e-23

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 84.87  E-value: 4.95e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:cd12152     1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILAD 78
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-81 2.29e-22

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 83.27  E-value: 2.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707812228   1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACV 80
Cdd:PRK00571    1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80


                  .
gi 1707812228  81 D 81
Cdd:PRK00571   81 D 81
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 4-81 8.88e-22

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 80.17  E-value: 8.88e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228  4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:pfam02823  1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILAD 78
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-81 1.02e-21

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 81.53  E-value: 1.02e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1707812228   3 KLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILAD 79
 
Name Accession Description Interval E-value
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 4-81 3.96e-24

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 87.55  E-value: 3.96e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILAD 78
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 4-81 4.95e-23

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 84.87  E-value: 4.95e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:cd12152     1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILAD 78
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-81 2.29e-22

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 83.27  E-value: 2.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707812228   1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACV 80
Cdd:PRK00571    1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80


                  .
gi 1707812228  81 D 81
Cdd:PRK00571   81 D 81
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 4-81 8.88e-22

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 80.17  E-value: 8.88e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228  4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:pfam02823  1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILAD 78
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-81 1.02e-21

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 81.53  E-value: 1.02e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1707812228   3 KLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILAD 79
atpC PRK13449
ATP synthase F1 subunit epsilon;
1-72 1.50e-18

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 72.50  E-value: 1.50e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1707812228  1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKV-IYVPEGGEEQTLDIEGGFVELS 72
Cdd:PRK13449   1 MAKLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVtVYSSDGAAPEVFHVQGGFAEVN 73
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 2-81 4.41e-18

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 72.22  E-value: 4.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707812228   2 KKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGkVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:PRK13444    4 KKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIG-LLEIRKGEKLKRISVEGGFCEVKDNQISILTD 82
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-81 2.46e-17

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 70.37  E-value: 2.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707812228   1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVpEGGEEQTLDIEGGFVELSGGVVSACV 80
Cdd:PRK13446    2 AKKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYK-KGGKTHYVAVNGGFAEVSNNKVTVLA 80


                  .
gi 1707812228  81 D 81
Cdd:PRK13446   81 E 81
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 1-77 7.72e-16

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 66.74  E-value: 7.72e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228   1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGkVIYVPEG-GEEQTLDIEGGFVELSGGVVS 77
Cdd:PRK14736    1 MATFHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVG-VITVTETtGNGKRIYVRGGFAEIGPTSVT 77
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 1-72 1.46e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 60.94  E-value: 1.46e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1707812228   1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGkVIYVPEGGEEQTLDIEGGFVELS 72
Cdd:PRK13448    1 MATFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPG-ILTVTAGGNQQKIVVLGGLAEVS 71
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 1-81 4.10e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 59.78  E-value: 4.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707812228   1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVSACV 80
Cdd:PRK13450    1 ANNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILC 80


                  .
gi 1707812228  81 D 81
Cdd:PRK13450   81 D 81
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-77 5.02e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 55.79  E-value: 5.02e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1707812228  1 MKKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGGVVS 77
Cdd:PRK13442   3 GATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLT 79
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 4-77 8.24e-10

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 51.08  E-value: 8.24e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREG-KVIYVPEGGEEQTldIEGGFVELSGGVVS 77
Cdd:PRK13443    5 LQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGiLRAHGPSGTQEYA--VTGGFAEINATSIS 77
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 4-71 9.94e-09

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 48.46  E-value: 9.94e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIYVpEGGEEQTLDIEGGFVEL 71
Cdd:PRK14735    3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIV-KNGVRTPFAISGGFMEV 69
atpE CHL00063
ATP synthase CF1 epsilon subunit
 3-71 2.19e-06

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 42.16  E-value: 2.19e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1707812228   3 KLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGkVIYVPEGGEEQTLDIEGGFVEL 71
Cdd:CHL00063    2 TLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIG-VLRIRLNDQWLTMALMGGFARI 69
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 2-81 2.45e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 42.42  E-value: 2.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707812228   2 KKLYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGkVIYVPEGGEEQTLDIEGGFVELSGGVVSACVD 81
Cdd:PRK13452    4 KYLKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAG-VVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVD 82
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 8-77 3.72e-05

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 38.70  E-value: 3.72e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1707812228   8 IVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKV-IYVPEGGE-EQTLDIEGGFVELSGGVVS 77
Cdd:PRK01474    9 IITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVqVYIDDMHKsENTYLISGGVTEVTGNYIN 80
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 4-73 5.45e-05

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 37.84  E-value: 5.45e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707812228   4 LYLNIVSPEKEIYNGEIESVTLPGTIGTFTILPQHAPIVSSLREGKVIyVPEGGEEQTLDIEGGFVELSG 73
Cdd:PRK13451    1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVK-IKSGDDEYEYKVADGFLHCDG 69
PRK13447 PRK13447
F0F1 ATP synthase subunit epsilon; Provisional
 30-79 3.45e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184057 [Multi-domain]  Cd Length: 136  Bit Score: 33.83  E-value: 3.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1707812228  30 GTFTILPQHAPIVSSLREGKVIYVPEGGEEQTLDIEGGFVELSGG--VVSAC 79
Cdd:PRK13447   28 GGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGarVEIAC 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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