Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, ...
219-892
2.85e-57
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
The actual alignment was detected with superfamily member TIGR03434:
Pssm-ID: 274576 [Multi-domain] Cd Length: 803 Bit Score: 211.22 E-value: 2.85e-57
permease prefix domain 2; The permease prefix domain 2 is found as the N-terminal domain of ...
3-63
1.27e-32
permease prefix domain 2; The permease prefix domain 2 is found as the N-terminal domain of putative permeases resembling ABC transporter permeases. In at least some permease families, this prefix domain is only variably present, and may be replaced by a different, seemingly unrelated prefix domain. This domain is considerably less common than permease prefix domain 1 (NF038404).
:
Pssm-ID: 439693 Cd Length: 62 Bit Score: 120.44 E-value: 1.27e-32
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ...
94-317
2.73e-17
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
:
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 81.42 E-value: 2.73e-17
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, ...
219-892
2.85e-57
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Pssm-ID: 274576 [Multi-domain] Cd Length: 803 Bit Score: 211.22 E-value: 2.85e-57
permease prefix domain 2; The permease prefix domain 2 is found as the N-terminal domain of ...
3-63
1.27e-32
permease prefix domain 2; The permease prefix domain 2 is found as the N-terminal domain of putative permeases resembling ABC transporter permeases. In at least some permease families, this prefix domain is only variably present, and may be replaced by a different, seemingly unrelated prefix domain. This domain is considerably less common than permease prefix domain 1 (NF038404).
Pssm-ID: 439693 Cd Length: 62 Bit Score: 120.44 E-value: 1.27e-32
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ...
94-317
2.73e-17
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 81.42 E-value: 2.73e-17
FtsX-like permease family; This is a family of predicted permeases and hypothetical ...
371-489
5.52e-12
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 63.42 E-value: 5.52e-12
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, ...
219-892
2.85e-57
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Pssm-ID: 274576 [Multi-domain] Cd Length: 803 Bit Score: 211.22 E-value: 2.85e-57
permease prefix domain 2; The permease prefix domain 2 is found as the N-terminal domain of ...
3-63
1.27e-32
permease prefix domain 2; The permease prefix domain 2 is found as the N-terminal domain of putative permeases resembling ABC transporter permeases. In at least some permease families, this prefix domain is only variably present, and may be replaced by a different, seemingly unrelated prefix domain. This domain is considerably less common than permease prefix domain 1 (NF038404).
Pssm-ID: 439693 Cd Length: 62 Bit Score: 120.44 E-value: 1.27e-32
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ...
94-317
2.73e-17
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 81.42 E-value: 2.73e-17
FtsX-like permease family; This is a family of predicted permeases and hypothetical ...
371-489
5.52e-12
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 63.42 E-value: 5.52e-12
FtsX-like permease family; This is a family of predicted permeases and hypothetical ...
773-885
3.11e-05
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 44.16 E-value: 3.11e-05
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ...
516-737
4.70e-04
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 42.52 E-value: 4.70e-04
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ...
768-892
1.04e-03
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442361 [Multi-domain] Cd Length: 830 Bit Score: 42.87 E-value: 1.04e-03
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ...
228-529
5.82e-03
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442361 [Multi-domain] Cd Length: 830 Bit Score: 40.55 E-value: 5.82e-03
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
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Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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