|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
3-509 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 562.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 3 ILGYAQKLGKALMLPIATLPIAGLLLRLG----QPDVFDIAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGAAGLAGAV 78
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAALAGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 79 AYFVLT--------ATASTIDASVNMSFFGGIIAGI------IAGHSYNAFHATRLPEWLAFFSGKRLVPIMAGLFALVA 144
Cdd:TIGR01998 81 AYFVVTkvlsppplAAALGIKSEINMAFSAWKNVFVgilaglIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 145 GAVSGIVWPTIQGGLDALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGmgscqevlvsgataagqalpalqq 224
Cdd:TIGR01998 161 AALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFD------------------------ 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 225 lcvdpalaktlvagqthtfefansvtpeiTATVKEVTETVKSGDLHRFFGgdkSAGVFMNGFFPVMMFGLPGAALAMYLA 304
Cdd:TIGR01998 217 -----------------------------VAGINDFGNFTGGGDLNRFKG---IAGMFMAGFFPIMMFGLPAAALAMYHT 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 305 APVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGTLHGFTFSAGLIDYLLNYGLA 384
Cdd:TIGR01998 265 ARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGFSFSAGLIDYVLSFNNP 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 385 TK--PLLLGAVGLGFGALYFFTFSFAIRAFNLKSPGREDDDSQAAAPAGEAKSGD----LARQYLKALGGHDNLTSIDAC 458
Cdd:TIGR01998 345 TAnqPLMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAAVTSTGDskmqLAKQYLAALGGHDNLVSIDAC 424
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1695676126 459 ITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMK 509
Cdd:TIGR01998 425 ITRLRLTLKDTSIVDEPALKALGARGVVKLGKHNLQVILGPLAEIVAGEMK 475
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-513 |
7.65e-147 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 435.84 E-value: 7.65e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 1 MNILGYAQKLGKALMLPIATLPIAGLLLRLGQPDVFDIAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGAAGLAGAVAY 80
Cdd:PRK10255 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 81 FVLTATASTIDASVNMSFFGGIIAGIIAGHSYNAFHATRLPEWLAFFSGKRLVPIMAGLFALVAGAVSGIVWPTIQGGLD 160
Cdd:PRK10255 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 161 ALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGMGscqevlvsgataagqalpalqqlcvdpalaktlvagqt 240
Cdd:PRK10255 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIG-------------------------------------- 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 241 htfEFANSVTpeitatvkevteTVKSGDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPVEKRSQVGGALFSV 320
Cdd:PRK10255 203 ---EFTNAAG------------TVFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSV 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 321 AFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGTLHGFTFSAGLIDYLLNYGL--ATKPL-LLGAVGLGF 397
Cdd:PRK10255 268 AVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLpaASQNVwMLLVMGVVF 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 398 GALYFFTFSFAIRAFNLKSPGREDDDSQAAAPAGEAKSGD----LARQYLKALGGHDNLTSIDACITRLRLTLKDRSVAD 473
Cdd:PRK10255 348 FAIYFVLFSAVIRMFNLKTPGREDKEDEIVTEEANSNTEEgltqLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVN 427
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1695676126 474 EEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMKAIGA 513
Cdd:PRK10255 428 DAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVA 467
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
3-517 |
3.12e-63 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 213.65 E-value: 3.12e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 3 ILGYAQKLGKALMLPIATLPIAGLLLRLGQ----PDVFD--------IAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQG 70
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGegsflsgtYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 71 AAGLAGAVAYFVLTATASTidASVNMSFFGGIIAGIIAGH-----------SY-NAFHATRLPEWLAFFsgkrLVPIMAG 138
Cdd:COG1263 88 AAVIGYLLVHPTLLNAYAV--AGGYISFLGIPTLIGYQGGvfpgilagwlaAYlEKFLKKKLPDALGFF----FVPILTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 139 LFALVAGA-VSGIVWPTIQGGL-DALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGMGScqevlvsgataag 216
Cdd:COG1263 162 LIMVPLALlVIGPIWPPIGNGIaAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG------------- 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 217 qalpalqqlcvdpalaktlvagqthtfefansvtpeitatvkevtetvksgdlhrfFGGDksagvFMNGFFPVMMFGLPG 296
Cdd:COG1263 229 --------------------------------------------------------TGDD-----GLFPILAAAMFGQPG 247
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 297 AALAMYLAAPveKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGtLHGFTFS-AGLI 375
Cdd:COG1263 248 AALAVYLKAK--PNKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLG-VKAFSFGvGGLI 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 376 DYLLNYGLATKPLLLGAVGLGFGALYFFTFSFAIrafnlkspGREDDDSQAAAPAGEAKSGDLARQYLKALGGHDNLTSI 455
Cdd:COG1263 325 DFPSILNPGATNLLLYLIGLVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLL 396
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1695676126 456 DACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMKAIGANEDL 517
Cdd:COG1263 397 EADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVL 458
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
11-353 |
1.80e-34 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 132.09 E-value: 1.80e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 11 GKALMLPIATLPIAGLLLRLG--------------QPDVFDIAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGAAG--- 73
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndttglpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAagl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 74 ------LAGAVAYFVLTATASTIDASV------NMSFFGGIIAGIIAGHSYNAFHA---TRLPEWLAFFSGKRLVPIMAG 138
Cdd:pfam02378 81 igllsfNLAAAISVALTAAGLSGGGNIlgiglgATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 139 LFA-LVAGAVSGIVWPTIQGGLDALAHGISTSG-AIGQFVYGTLNRALIPVGLHHVLNSFFWFgmgscqevlvsgaTAAG 216
Cdd:pfam02378 161 FVTlLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWF-------------LPIG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 217 QALPALQQLCVDPALAKtlvagqthtfefansvtpeitatvkevtetvksgdlhrffggdksagvFMNGFFpVMMFGLPG 296
Cdd:pfam02378 228 GSNPIANQQAYGAGAAH------------------------------------------------ILTGGF-DVMFGGPG 258
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1695676126 297 AALAMYLAAPVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTG 353
Cdd:pfam02378 259 ATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
437-512 |
4.00e-28 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 106.85 E-value: 4.00e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1695676126 437 DLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPL-AEIVAGEMKAIG 512
Cdd:cd00212 2 QLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGvADVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
3-509 |
0e+00 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 562.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 3 ILGYAQKLGKALMLPIATLPIAGLLLRLG----QPDVFDIAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGAAGLAGAV 78
Cdd:TIGR01998 1 ILGYFQKLGRALMLPIATLPVAALLLRIGnathGADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGAAALAGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 79 AYFVLT--------ATASTIDASVNMSFFGGIIAGI------IAGHSYNAFHATRLPEWLAFFSGKRLVPIMAGLFALVA 144
Cdd:TIGR01998 81 AYFVVTkvlsppplAAALGIKSEINMAFSAWKNVFVgilaglIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 145 GAVSGIVWPTIQGGLDALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGmgscqevlvsgataagqalpalqq 224
Cdd:TIGR01998 161 AALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFD------------------------ 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 225 lcvdpalaktlvagqthtfefansvtpeiTATVKEVTETVKSGDLHRFFGgdkSAGVFMNGFFPVMMFGLPGAALAMYLA 304
Cdd:TIGR01998 217 -----------------------------VAGINDFGNFTGGGDLNRFKG---IAGMFMAGFFPIMMFGLPAAALAMYHT 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 305 APVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGTLHGFTFSAGLIDYLLNYGLA 384
Cdd:TIGR01998 265 ARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGFSFSAGLIDYVLSFNNP 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 385 TK--PLLLGAVGLGFGALYFFTFSFAIRAFNLKSPGREDDDSQAAAPAGEAKSGD----LARQYLKALGGHDNLTSIDAC 458
Cdd:TIGR01998 345 TAnqPLMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAAVTSTGDskmqLAKQYLAALGGHDNLVSIDAC 424
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1695676126 459 ITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMK 509
Cdd:TIGR01998 425 ITRLRLTLKDTSIVDEPALKALGARGVVKLGKHNLQVILGPLAEIVAGEMK 475
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
1-513 |
7.65e-147 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 435.84 E-value: 7.65e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 1 MNILGYAQKLGKALMLPIATLPIAGLLLRLGQPDVFDIAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGAAGLAGAVAY 80
Cdd:PRK10255 1 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 81 FVLTATASTIDASVNMSFFGGIIAGIIAGHSYNAFHATRLPEWLAFFSGKRLVPIMAGLFALVAGAVSGIVWPTIQGGLD 160
Cdd:PRK10255 81 FVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 161 ALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGMGscqevlvsgataagqalpalqqlcvdpalaktlvagqt 240
Cdd:PRK10255 161 AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIG-------------------------------------- 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 241 htfEFANSVTpeitatvkevteTVKSGDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPVEKRSQVGGALFSV 320
Cdd:PRK10255 203 ---EFTNAAG------------TVFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSV 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 321 AFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGTLHGFTFSAGLIDYLLNYGL--ATKPL-LLGAVGLGF 397
Cdd:PRK10255 268 AVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLpaASQNVwMLLVMGVVF 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 398 GALYFFTFSFAIRAFNLKSPGREDDDSQAAAPAGEAKSGD----LARQYLKALGGHDNLTSIDACITRLRLTLKDRSVAD 473
Cdd:PRK10255 348 FAIYFVLFSAVIRMFNLKTPGREDKEDEIVTEEANSNTEEgltqLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVN 427
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1695676126 474 EEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMKAIGA 513
Cdd:PRK10255 428 DAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVA 467
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-514 |
8.62e-119 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 359.10 E-value: 8.62e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 2 NILGYAQKLGKALMLPIATLPIAGLLLRLG----QPDVFDIA-------------FMAQAGNSIFSNLPLLFGLGIAIGL 64
Cdd:TIGR02002 3 KAFGQLQKIGKALMLPVAVLPVAGILLGFGnanqNNQVFSFLpflhmewiqlvskVMEAAGGIIFANLPLIFAIGVALGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 65 SKDGQGAAGLAGAVaYFVLTAT------------ASTIDASVNM--------SFFGGIIAGIIAGHSYNAFHATRLPEWL 124
Cdd:TIGR02002 83 AGNDGVAGLAALVG-YLIMNKTmgvvagltllliASEIASFASVlgiptlqtGVFGGIIIGAIAAYCYNRFYNIKLPEYL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 125 AFFSGKRLVPIMAGLFALVAGAVSGIVWPTIQGGLDALAH-GISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGMGS 203
Cdd:TIGR02002 162 GFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHwAAYQNPVVAFFIFGFIERSLIPFGLHHIFNAPFWFEFGS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 204 CqevlvsgATAAGQalpalqqlcvdpalaktlvagqthtfefansvtpeitatvkevtetVKSGDLHRFFGGDK-----S 278
Cdd:TIGR02002 242 Y-------TNEAGN----------------------------------------------LFRGDQPIFMAQLKdgvafT 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 279 AGVFMNGFFPVMMFGLPGAALAMYLAAPVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVV 358
Cdd:TIGR02002 269 AGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFLTGITEPLEFSFLFVAPILYVIHAILAGLSFPI 348
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 359 ANMLGTLHGFTFSAGLIDYLLnYGL---ATKPLLLGAVGLGFGALYFFTFSFAIRAFNLKSPGREDDDSQAAAPageAKS 435
Cdd:TIGR02002 349 MILLGVKIGTTFSGGAIDFIL-YGLlsnRSKAWLFIIVGIGYAIIYYFLFRFLIKKLNLKTPGREDATAEAKAT---GEP 424
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1695676126 436 GDLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGeNNLQVILGPLAEIVAGEMKAIGAN 514
Cdd:TIGR02002 425 SELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGAAGVLVVG-NNVQAIFGPKSDTIKSEMHDIIRG 502
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
1-508 |
6.95e-110 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 335.15 E-value: 6.95e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 1 MNILGYAQKLGKALMLPIATLPIAGLLLRLGQ------PDVFDiAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGAAGL 74
Cdd:PRK11089 3 KNAFANLQKVGKSLMLPVSVLPIAGILLGVGSanfswlPAVVS-HVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 75 AGAVaYFVLTATASTIDASV-NMSFFGGIIAGII-------------AGHSYNAFHATRLPEWLAFFSGKRLVPIMAGLF 140
Cdd:PRK11089 82 AVVA-YGIMVKTMAVVAPLVlHLPAEEIAAKHLAdtgvlggiiagaiAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 141 ALVAGAVSGIVWPTIQGGLDALAHGISTSGAIGQF-VYGTLNRALIPVGLHHVLNSFFWFGMGSCqevlvsgATAAGQal 219
Cdd:PRK11089 161 AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFgIYGFVERSLVPFGLHHIWNVPFQMQIGEY-------TNAAGQ-- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 220 palqqlcvdpalaktlvagqthtfefansvtpeitatvkevtetVKSGDLHRFFGGDKSAGVFMNGFFpVMMFGLPGAAL 299
Cdd:PRK11089 232 --------------------------------------------VFHGDIPRYMAGDPTAGKLSGGFL-FKMYGLPAAAI 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 300 AMYLAAPVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGTLHGFTFSAGLIDYLL 379
Cdd:PRK11089 267 AIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIV 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 380 NYGLATKPLLLGAVGLGFGALYFFTFSFAIRAFNLKSPGREDDDSQAAAPAGEAKSGDLarqyLKALGGHDNLTSIDACI 459
Cdd:PRK11089 347 LSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDETEDAKATGTSEMAPAL----VAAFGGKENITNLDACI 422
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1695676126 460 TRLRLTLKDRSVADEEVLKKLGAKGVVKLGeNNLQVILGPLAEIVAGEM 508
Cdd:PRK11089 423 TRLRVSVADVSKVDQAGLKKLGAAGVVVAG-SGVQAIFGTKSDNLKTEM 470
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
8-511 |
1.14e-83 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 268.91 E-value: 1.14e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 8 QKLGKALMLPIATLPIAGLLLRLGQP---------------DVFDIAF--MAQAGNSIFSNLPLLFGLGIAIGLSKDGQG 70
Cdd:PRK10110 16 QQLGKTFMLPVALLSFCGIMLGIGSSlsshdvitlipflgnPVLQAIFtwMSKIGSFAFSFLPVMFCIAIPLGLARENKG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 71 AAGLAGAVAY--------FVLTATA--STIDA---------------SVNMSFFGGIIAGIIAGHSYNAFHATRLPEWLA 125
Cdd:PRK10110 96 VAAFAGFVGYavmnlavnFWLTNKGilPTTDAavlkanniqsilgiqSIDTGILGAVIAGIIVWMLHERFHNIRLPDALA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 126 FFSGKRLVPIMAGLFALVAGAVSGIVWPTIQGGLDALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFG-MGSC 204
Cdd:PRK10110 176 FFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRFTdAGGT 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 205 QEVL---VSGATAAGQAlpalQQLCVDPAlaktlvagqthtfEFANSVTpeitatvkevtetvksgdlhRFFGgdksagv 281
Cdd:PRK10110 256 QEVCgqtVSGALTIFQA----QLSCPTTH-------------GFSESAT--------------------RFLS------- 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 282 fmNGFFPVMMFGLPGAALAMYLAAPVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANM 361
Cdd:PRK10110 292 --QGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSV 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 362 LGTLHGFTfSAGLIDYL---LNYGLATKPLLLGAVGLGFGALYFFTFSFAIRAFNLKSPGREDDDS---QAAAPAGEAKS 435
Cdd:PRK10110 370 LGVTIGNT-DGNIIDFVvfgILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVAssiEKAVAGAPGKS 448
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1695676126 436 GDLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMKAI 511
Cdd:PRK10110 449 GYNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGL 524
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
6-511 |
9.21e-75 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 245.52 E-value: 9.21e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 6 YAQKLGKALMLPIATLPIAGLLLRLGQP---------------DVFDIAF--MAQAGNSIFSNLPLLFGLGIAIGLSKDG 68
Cdd:TIGR02004 7 FFQGLGKTFMLPVALLAFMGILLGLGSSfsseamietipflgkPAFKIIFqwMSTIGLVAFAYLPVMFAMAIPLGLAREE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 69 QGAAGLAGAVAY--------FVLTATASTID---------------ASVNMSFFGGIIAGIIAGHSYNAFHATRLPEWLA 125
Cdd:TIGR02004 87 KGVAAFSGFVGYtamnlainFYLTQTGVLVDpeqlreagqgmvfgiQSIDTGVLGAVIVGLIVYKLHNRFYTVQMPDALA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 126 FFSGKRLVPIMAGLFALVAGAVSGIVWPTIQGGLDALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGMGSCQ 205
Cdd:TIGR02004 167 FFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMIRFTEAGGS 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 206 EVlVSGATAAGQALPALQQL-CVDPAlaktlvagqthtfefanSVTPEITATVKEvtetvksgdlhrffggdksagvfmn 284
Cdd:TIGR02004 247 AV-VCGKEVSGALNIFYAELqCNLPI-----------------SAVPSATAFLSQ------------------------- 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 285 GFFPVMMFGLPGAALAMYLAAPVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGT 364
Cdd:TIGR02004 284 GKMPTFLGGLPGAALAMYHCARPANRHKIKALLLSGVVACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGV 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 365 LHGFTfSAGLIDYL---LNYGLATKPLLLGAVGLGFGALYFFTFSFAIRAFNLKSPGREDDDSQAAAPAGEAK----SGD 437
Cdd:TIGR02004 364 VIGNT-DGNLIDFLvfgVLQGTYTKWYLVPIVAAIWFVVYYFVFKTAITTFDLKTPGREKVLDAEEYTEQEVAykktGGY 442
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1695676126 438 LARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMKAI 511
Cdd:TIGR02004 443 DAAAILAALGGQENIQSLDNCITRLRLVVADANKVDDAKLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLEMI 516
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
3-517 |
3.12e-63 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 213.65 E-value: 3.12e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 3 ILGYAQKLGKALMLPIATLPIAGLLLRLGQ----PDVFD--------IAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQG 70
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGAlltnPGLLGegsflsgtYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 71 AAGLAGAVAYFVLTATASTidASVNMSFFGGIIAGIIAGH-----------SY-NAFHATRLPEWLAFFsgkrLVPIMAG 138
Cdd:COG1263 88 AAVIGYLLVHPTLLNAYAV--AGGYISFLGIPTLIGYQGGvfpgilagwlaAYlEKFLKKKLPDALGFF----FVPILTL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 139 LFALVAGA-VSGIVWPTIQGGL-DALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGMGScqevlvsgataag 216
Cdd:COG1263 162 LIMVPLALlVIGPIWPPIGNGIaAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG------------- 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 217 qalpalqqlcvdpalaktlvagqthtfefansvtpeitatvkevtetvksgdlhrfFGGDksagvFMNGFFPVMMFGLPG 296
Cdd:COG1263 229 --------------------------------------------------------TGDD-----GLFPILAAAMFGQPG 247
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 297 AALAMYLAAPveKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTGLSLVVANMLGtLHGFTFS-AGLI 375
Cdd:COG1263 248 AALAVYLKAK--PNKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLG-VKAFSFGvGGLI 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 376 DYLLNYGLATKPLLLGAVGLGFGALYFFTFSFAIrafnlkspGREDDDSQAAAPAGEAKSGDLARQYLKALGGHDNLTSI 455
Cdd:COG1263 325 DFPSILNPGATNLLLYLIGLVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLL 396
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1695676126 456 DACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMKAIGANEDL 517
Cdd:COG1263 397 EADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVL 458
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
8-498 |
7.15e-63 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 214.30 E-value: 7.15e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 8 QKLGKALMLPIATLPIAGLLLRLG----QPDVFD------------IAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGA 71
Cdd:TIGR02005 5 QRFGGAMFVPVLLFAFAGIVVGFAilfkNPDIMGsladqntfwykfWSVIEEGGWTVFRQMPLIFVVGLPIGLAKKAQGR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 72 AGLAGAVAYF--------VLTATASTIDASVNM--------------------SFFGGIIAGIIAGHSYNAFHATRLPEW 123
Cdd:TIGR02005 85 ACLAALMGYLtfnyfinaILTQWGSSFGVNFTQgvgvgvsgltsiagiktldtSIIGAIIISGIITYIHNRFFDKRLPVF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 124 LAFFSGKRLVPIMAGLFALVAGAVSGIVWPTIQGGLDALAHGISTSGAIGQFVYGTLNRALIPVGLHHVLNSFFWFGmgs 203
Cdd:TIGR02005 165 LGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPFIFG--- 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 204 cqevlvsgataagqalPALqqlcVDPALAktlVAGQTHTFEFANSVTPeitatvkevtetvksgdLHRFFggdkSAGVFM 283
Cdd:TIGR02005 242 ----------------PAV----VNHGIQ---AYWAQHLNEFAKSTKP-----------------LKELF----PYGGFA 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 284 ---NGffpvMMFGLPGAALAMYLAAPVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVftglslVVAN 360
Cdd:TIGR02005 278 lhgNS----KVFGCLGIALAMYATAPPENRKKVAGLLIPATLTAVVVGITEPLEFTFLFIAPYLFVVHAV------LAAS 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 361 MLGTLHGF----TFSAGLIDYLLNYGLatkPLLLG---------AVGLGFGALYFFTFSFAIRAFNLKSPGREDDDSQA- 426
Cdd:TIGR02005 348 MATVMYAFgvvgNMGGGLIDFIATNWL---PLFKNhwgtyvtqiIIGLCFTAIYFLVFRFLILKFNIPTPGREDTEEEVk 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 427 -------AAPAGEAKS-------GDLARQYLKALGGHDNLTSIDACITRLRLTLKDRS-VADEEVLKKLGAKGVVKLGEn 491
Cdd:TIGR02005 425 lyskadyKAKKGDSVEskrassgNDKAAYFLQALGGKENIKDVTNCATRLRISVKDESkVLDDEVFKKAGAHGVVRSGK- 503
|
....*..
gi 1695676126 492 NLQVILG 498
Cdd:TIGR02005 504 AIQVIVG 510
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
11-353 |
1.80e-34 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 132.09 E-value: 1.80e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 11 GKALMLPIATLPIAGLLLRLG--------------QPDVFDIAFMAQAGNSIFSNLPLLFGLGIAIGLSKDGQGAAG--- 73
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndttglpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAagl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 74 ------LAGAVAYFVLTATASTIDASV------NMSFFGGIIAGIIAGHSYNAFHA---TRLPEWLAFFSGKRLVPIMAG 138
Cdd:pfam02378 81 igllsfNLAAAISVALTAAGLSGGGNIlgiglgATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 139 LFA-LVAGAVSGIVWPTIQGGLDALAHGISTSG-AIGQFVYGTLNRALIPVGLHHVLNSFFWFgmgscqevlvsgaTAAG 216
Cdd:pfam02378 161 FVTlLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWF-------------LPIG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 217 QALPALQQLCVDPALAKtlvagqthtfefansvtpeitatvkevtetvksgdlhrffggdksagvFMNGFFpVMMFGLPG 296
Cdd:pfam02378 228 GSNPIANQQAYGAGAAH------------------------------------------------ILTGGF-DVMFGGPG 258
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1695676126 297 AALAMYLAAPVEKRSQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAIHAVFTG 353
Cdd:pfam02378 259 ATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
437-511 |
3.22e-31 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 115.22 E-value: 3.22e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1695676126 437 DLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGeNNLQVILGPLAEIVAGEMKAI 511
Cdd:COG1264 2 ELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVKNG-GQVQVIIGPGVDKVADEIEKL 75
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
437-512 |
4.00e-28 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 106.85 E-value: 4.00e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1695676126 437 DLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLGAKGVVKLGENNLQVILGPL-AEIVAGEMKAIG 512
Cdd:cd00212 2 QLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGvADVYKEAIKLLG 78
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
410-498 |
1.52e-23 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 94.35 E-value: 1.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 410 RAFNLKSPGREDDDSQAAAPAGEAKSGDLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLGAKGVVKLG 489
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPLQ 80
|
....*....
gi 1695676126 490 eNNLQVILG 498
Cdd:TIGR00826 81 -RAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
392-498 |
4.95e-18 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 81.30 E-value: 4.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 392 AVGLGFGALYFFTFSFAIRAFNLKSPGREDDD-----------SQAAAPAGEAKSG-DLARQYLKALGGHDNLTSIDACI 459
Cdd:PRK09702 14 AIGLCFTLLYFVVFRTLILQFNMCTPGREDAEvklyskaeykaSRGQTTAAEPKKElDQAAGILQALGGVGNISSINNCA 93
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1695676126 460 TRLRLTLKDRS-VADEEVLKKLGAKGVVKLGEnNLQVILG 498
Cdd:PRK09702 94 TRLRIALHDMSqTLDDEVFKKLGAHGVFRSGD-AIQVIIG 132
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
440-470 |
6.86e-12 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 59.69 E-value: 6.86e-12
10 20 30
....*....|....*....|....*....|.
gi 1695676126 440 RQYLKALGGHDNLTSIDACITRLRLTLKDRS 470
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDES 31
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
435-508 |
4.60e-10 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 62.00 E-value: 4.60e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1695676126 435 SGDLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKL-GAKGVVkLGENNLQVILGPLAEIVAGEM 508
Cdd:PRK09586 5 SSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIeGVKGVI-LSDDQVQVVLGPGKAQRAAKA 78
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
438-498 |
9.75e-08 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 54.42 E-value: 9.75e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1695676126 438 LARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKL-GAKGVVKlGENNLQVILG 498
Cdd:PRK09796 8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIpGVLGVVR-SDNQCQVIIG 68
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
437-515 |
1.37e-06 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 50.42 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1695676126 437 DLARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKL-GAKGVVKLGeNNLQVILGP-LAEIVAGEMKAIGAN 514
Cdd:PRK14905 276 EIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIdCVKGLFSIA-NQYQIILGAgIVEKIHEEMKALLAR 354
|
.
gi 1695676126 515 E 515
Cdd:PRK14905 355 E 355
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
438-498 |
1.12e-04 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 44.70 E-value: 1.12e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1695676126 438 LARQYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKK-LGAKGVVKLGeNNLQVILG 498
Cdd:PRK09824 6 LAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKnPGVIMVVESG-GQFQVVIG 66
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
441-499 |
3.36e-03 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 40.05 E-value: 3.36e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1695676126 441 QYLKALGGHDNLTSIDACITRLRLTLKDRSVADEEVLKKLgakGVVKLGENN---LQVILGP 499
Cdd:PRK11007 12 RLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQL---PMVKGCFTNagqFQVVIGT 70
|
|
| |
