|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
195-552 |
1.34e-159 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 462.70 E-value: 1.34e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 195 TPYFEADSIVG---------RLLELREEVEAMRQSIACPRRIP--NLIGASTGFRNAYELVTKAASTNVTVLLLGETGVG 263
Cdd:COG3829 94 IPIFEDGEVIGavetfrditELKRLERKLREEELERGLSAKYTfdDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 264 KERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTGAHAS-RAGKFERADGGTLFLDEVGELPLSAQAKL 342
Cdd:COG3829 174 KELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 343 LRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFCSL 422
Cdd:COG3829 254 LRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKK 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 423 HAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVILApQNGWVEVEHLflgavPPATahacidKSGKLGEQPRGGLDL 502
Cdd:COG3829 334 YGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLS-EGDVITPEHL-----PEYL------LEEAEAASAAEEGSL 401
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1694441079 503 PGAvldagvsLEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:COG3829 402 KEA-------LEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKK 444
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
206-552 |
3.75e-119 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 361.41 E-value: 3.75e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 206 RLLELREEVEAMRQSiacPRRIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAV 285
Cdd:PRK05022 168 QAELPQDVAEFLRQE---ALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 286 NCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVR 365
Cdd:PRK05022 245 NCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 366 LVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEamtaRFC-----SLHAKRVAgITDKAMLALKN 440
Cdd:PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAG----YFLeqnraRLGLRSLR-LSPAAQAALLA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 441 HRWPGNVRELENVIERGVILA---PQNGWV--EVEHLFL---GAVPPATAHACidksgklgEQPRGGLDLPGAVldagvs 512
Cdd:PRK05022 400 YDWPGNVRELEHVISRAALLArarGAGRIVtlEAQHLDLpaeVALPPPEAAAA--------PAAVVSQNLREAT------ 465
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1694441079 513 lEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLnYRLKK 552
Cdd:PRK05022 466 -EAFQRQLIRQALAQHQGNWAAAARALELDRANL-HRLAK 503
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
211-552 |
3.72e-116 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 354.79 E-value: 3.72e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 211 REEVEAMRQSIACPRR----IPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVN 286
Cdd:TIGR01817 175 QLSKQLRDKAPEIARRrsgkEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVN 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 287 CAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRL 366
Cdd:TIGR01817 255 CAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 367 VAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFcSLHAKRVAGITDKAMLALKNHRWPGN 446
Cdd:TIGR01817 335 VAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKF-NRENGRPLTITPSAIRVLMSCKWPGN 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 447 VRELENVIERGVILAPQNGWVEVEHLF---------LGAVPPATAHACIDKSGKLGEQPRGGLDLPGAVLDAGVSLEalE 517
Cdd:TIGR01817 414 VRELENCLERTATLSRSGTITRSDFSCqsgqclspmLAKTCPHGHISIDPLAGTTPPHSPASAALPGEPGLSGPTLS--E 491
|
330 340 350
....*....|....*....|....*....|....*
gi 1694441079 518 QDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:TIGR01817 492 RERLIAALEQAGWVQAKAARLLGMTPRQVGYALRK 526
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
230-397 |
1.39e-107 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 319.35 E-value: 1.39e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 230 LIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTG 309
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 310 AHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYY 389
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1694441079 390 RLNVYPVT 397
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
12-111 |
1.46e-48 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 163.46 E-value: 1.46e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 12 LRQLLRFSDKDGLIWLGEHRMVLLHTAALSELRKELIDSVGAEQARRILTRMGFASGLRDAELARKIRGAGNLVDAFVVG 91
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 1694441079 92 PQLHMLEGCVEVEPVRLDID 111
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
126-184 |
7.01e-24 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 94.65 E-value: 7.01e-24
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1694441079 126 SWEAEVHVQQYGEMDHPVCWMMIGYASGYTSAFMGRFILFREVECAAMGTDHCRIVGKP 184
Cdd:smart00989 3 SVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVKP 61
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
236-400 |
1.90e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.45 E-value: 1.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 236 GFRNAYELVTKAASTNV--TVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFtgahas 313
Cdd:cd00009 2 GQEEAIEALREALELPPpkNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 314 RAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEierlgDERTRKINVRLVAATNVDLqdavaAGRFRRDLYYRLNV 393
Cdd:cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRLDI 145
|
....*..
gi 1694441079 394 yPVTIPP 400
Cdd:cd00009 146 -RIVIPL 151
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
123-184 |
1.33e-14 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 68.47 E-value: 1.33e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1694441079 123 WRQSWEAEVHVQQYGEMDHPVCWMMIGYASGYTSAFMGRFILFREVECAAMGTDHCRIVGKP 184
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
253-391 |
1.24e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 68.55 E-value: 1.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 253 TVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIES-ELFGVERGAFTGAHASRAGK-FERA---DGGTLF 327
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlLLIIVGGKKASGSGELRLRLaLALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1694441079 328 LDEVGELPLSAQAKLLRVLQEgeiERLGDERTRKINVRLVAATN--VDLQDAVAAGRFRRDLYYRL 391
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
195-552 |
1.34e-159 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 462.70 E-value: 1.34e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 195 TPYFEADSIVG---------RLLELREEVEAMRQSIACPRRIP--NLIGASTGFRNAYELVTKAASTNVTVLLLGETGVG 263
Cdd:COG3829 94 IPIFEDGEVIGavetfrditELKRLERKLREEELERGLSAKYTfdDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 264 KERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTGAHAS-RAGKFERADGGTLFLDEVGELPLSAQAKL 342
Cdd:COG3829 174 KELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 343 LRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFCSL 422
Cdd:COG3829 254 LRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKK 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 423 HAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVILApQNGWVEVEHLflgavPPATahacidKSGKLGEQPRGGLDL 502
Cdd:COG3829 334 YGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLS-EGDVITPEHL-----PEYL------LEEAEAASAAEEGSL 401
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1694441079 503 PGAvldagvsLEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:COG3829 402 KEA-------LEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKK 444
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
203-552 |
1.30e-135 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 400.49 E-value: 1.30e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 203 IVGRLLELREEVEAMRQSiacprriPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPF 282
Cdd:COG2204 113 AVERALERRRLRRENAED-------SGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 283 VAVNCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKI 362
Cdd:COG2204 186 VAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPV 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 363 NVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFCSLHAKRVAgITDKAMLALKNHR 442
Cdd:COG2204 266 DVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYD 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 443 WPGNVRELENVIERGVILAPqNGWVEVEHLflgavppatahacidksgklgeqprggldlpgavldaGVSLEALEQDILQ 522
Cdd:COG2204 345 WPGNVRELENVIERAVILAD-GEVITAEDL-------------------------------------PEALEEVERELIE 386
|
330 340 350
....*....|....*....|....*....|
gi 1694441079 523 RAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:COG2204 387 RALEETGGNVSRAAELLGISRRTLYRKLKK 416
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
160-552 |
2.54e-120 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 368.46 E-value: 2.54e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 160 GRFILFREVECAAMGTDHCRIVGKPAEEWPDAH-------------ELTPYFEAD-SIVGRLLELREEVEAMRQSIACPR 225
Cdd:COG3284 236 GRIVAANRAARRLLGLADAALLGRPLEELFGLDlealpdgarrapaSPRPLRLRDgRRLGALLRLRPARRAARAAPAGAP 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 226 R---IPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGV 302
Cdd:COG3284 316 ApaaLAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGY 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 303 ERGAFTGAHAS-RAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAG 381
Cdd:COG3284 396 EPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAG 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 382 RFRRDLYYRLNVYPVTIPPLRERaSDIPPLVEAMTARFCslHAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVILA 461
Cdd:COG3284 476 RFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRELA--AGRGPLRLSPEALALLAAYPWPGNVRELRNVLRTALALA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 462 PqNGWVEVEHLflgavPPATAhacidksgklgeqpRGGLDLPGAVLDAGVSLEALEQDILQRAVQRAGGNLSAAARMLGM 541
Cdd:COG3284 553 D-GGVITVEDL-----PDELR--------------AELAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALGI 612
|
410
....*....|..
gi 1694441079 542 TRPQLnYR-LKK 552
Cdd:COG3284 613 SRSTL-YRkLKR 623
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
206-552 |
3.75e-119 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 361.41 E-value: 3.75e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 206 RLLELREEVEAMRQSiacPRRIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAV 285
Cdd:PRK05022 168 QAELPQDVAEFLRQE---ALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 286 NCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVR 365
Cdd:PRK05022 245 NCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 366 LVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEamtaRFC-----SLHAKRVAgITDKAMLALKN 440
Cdd:PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAG----YFLeqnraRLGLRSLR-LSPAAQAALLA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 441 HRWPGNVRELENVIERGVILA---PQNGWV--EVEHLFL---GAVPPATAHACidksgklgEQPRGGLDLPGAVldagvs 512
Cdd:PRK05022 400 YDWPGNVRELEHVISRAALLArarGAGRIVtlEAQHLDLpaeVALPPPEAAAA--------PAAVVSQNLREAT------ 465
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1694441079 513 lEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLnYRLKK 552
Cdd:PRK05022 466 -EAFQRQLIRQALAQHQGNWAAAARALELDRANL-HRLAK 503
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
211-552 |
3.72e-116 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 354.79 E-value: 3.72e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 211 REEVEAMRQSIACPRR----IPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVN 286
Cdd:TIGR01817 175 QLSKQLRDKAPEIARRrsgkEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVN 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 287 CAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRL 366
Cdd:TIGR01817 255 CAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 367 VAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFcSLHAKRVAGITDKAMLALKNHRWPGN 446
Cdd:TIGR01817 335 VAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKF-NRENGRPLTITPSAIRVLMSCKWPGN 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 447 VRELENVIERGVILAPQNGWVEVEHLF---------LGAVPPATAHACIDKSGKLGEQPRGGLDLPGAVLDAGVSLEalE 517
Cdd:TIGR01817 414 VRELENCLERTATLSRSGTITRSDFSCqsgqclspmLAKTCPHGHISIDPLAGTTPPHSPASAALPGEPGLSGPTLS--E 491
|
330 340 350
....*....|....*....|....*....|....*
gi 1694441079 518 QDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:TIGR01817 492 RERLIAALEQAGWVQAKAARLLGMTPRQVGYALRK 526
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
230-397 |
1.39e-107 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 319.35 E-value: 1.39e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 230 LIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTG 309
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 310 AHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYY 389
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1694441079 390 RLNVYPVT 397
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
206-555 |
1.25e-98 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 306.68 E-value: 1.25e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 206 RLLELREEVEAMrQSIACPRRIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAV 285
Cdd:TIGR02915 118 HLYTLETENRRL-QSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAI 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 286 NCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVR 365
Cdd:TIGR02915 197 NCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 366 LVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFCSLHAKRVAGITDKAMLALKNHRWPG 445
Cdd:TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 446 NVRELENVIERGVILAPQNgwvevehlflgavppatahacIDKSGKLGEQPRGGLDLPGAVlDAGVSLEALEQDILQRAV 525
Cdd:TIGR02915 357 NVRELENKVKRAVIMAEGN---------------------QITAEDLGLDARERAETPLEV-NLREVRERAEREAVRKAI 414
|
330 340 350
....*....|....*....|....*....|
gi 1694441079 526 QRAGGNLSAAARMLGMTRPQLNYRLKKQAL 555
Cdd:TIGR02915 415 ARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
199-555 |
6.10e-92 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 289.83 E-value: 6.10e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 199 EADSIVGRLLEL---REEVEAMRQSIACPRRIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELS 275
Cdd:PRK11361 111 ELNLIVQRALQLqsmKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 276 PRKEAPFVAVNCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLG 355
Cdd:PRK11361 191 RRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIG 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 356 DERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFCSLHAKRVAGITDKAM 435
Cdd:PRK11361 271 GHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 436 LALKNHRWPGNVRELENVIERGVILApqNGWVevehLFLGAVPP----ATAHACIDKSGKLGEQPrggldlpgavLDAGV 511
Cdd:PRK11361 351 SLLTAWSWPGNIRELSNVIERAVVMN--SGPI----IFSEDLPPqirqPVCNAGEVKTAPVGERN----------LKEEI 414
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1694441079 512 SLEalEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKKQAL 555
Cdd:PRK11361 415 KRV--EKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
230-552 |
3.29e-88 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 279.61 E-value: 3.29e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 230 LIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTG 309
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 310 AHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYY 389
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 390 RLNVYPVTIPPLRERASDIPPLVEAMTARFCSLHAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVILAPQNGWVEV 469
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISER 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 470 EhlflgaVPPATAHACIDKSGKLGEQPrggldlpgavldagvsLEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYR 549
Cdd:PRK10365 381 E------LPLAIASTPIPLGQSQDIQP----------------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438
|
...
gi 1694441079 550 LKK 552
Cdd:PRK10365 439 LSR 441
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
229-494 |
3.29e-87 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 279.00 E-value: 3.29e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 229 NLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFT 308
Cdd:COG3283 205 HIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFG 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 309 GAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLY 388
Cdd:COG3283 285 NAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 389 YRLNVYPVTIPPLRERASDIPPLVEAMTARFCSLHAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVILApQNGWVE 468
Cdd:COG3283 365 YRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLL-EGDELT 443
|
250 260
....*....|....*....|....*.
gi 1694441079 469 VEHLFLGAVPPATAHACIDKSGKLGE 494
Cdd:COG3283 444 PEDLQLPEYAASAGLLDDLLEGSLDE 469
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
229-556 |
3.24e-85 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 267.69 E-value: 3.24e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 229 NLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFT 308
Cdd:PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 309 GAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLY 388
Cdd:PRK11608 87 GAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 389 YRLNVYPVTIPPLRERASDIPPLVEAMTARFC-SLHAKRVAGITDKAMLALKNHRWPGNVRELENVIERGV--------- 458
Cdd:PRK11608 167 DRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCrELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVyrhgtseyp 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 459 ----ILAPqngwvevehlFLGAVPPATAhacidksgklgeQPRGGLDLPGAVLDAGVSLEALEQDILQRAVQRAGGNLSA 534
Cdd:PRK11608 247 ldniIIDP----------FKRRPAEEAI------------AVSETTSLPTLPLDLREWQHQQEKELLQRSLQQAKFNQKR 304
|
330 340
....*....|....*....|..
gi 1694441079 535 AARMLGMTRPQLNYRLKKQALQ 556
Cdd:PRK11608 305 AAELLGLTYHQLRALLKKHQIL 326
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
230-552 |
4.83e-85 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 278.25 E-value: 4.83e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 230 LIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTG 309
Cdd:PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 310 AHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYY 389
Cdd:PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 390 RLNVYPVTIPPLRERASDIPPLVEAMTARFCSLHAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVILAPQNgwveV 469
Cdd:PRK15429 538 RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN----V 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 470 EHLFLGAVPPATAhaciDKSGKLGEQPRGGLDlpgavldagvslealEQDILQRAVQRAGGNLS---AAARMLGMTRPQL 546
Cdd:PRK15429 614 LQLSLPDITLPEP----ETPPAATVVAQEGED---------------EYQLIVRVLKETNGVVAgpkGAAQRLGLKRTTL 674
|
....*.
gi 1694441079 547 NYRLKK 552
Cdd:PRK15429 675 LSRMKR 680
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
184-552 |
1.18e-83 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 264.02 E-value: 1.18e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 184 PAEEWPDAHELTPYFEADSIVGRLLELREEVEAMRQSIACPRRIPN-LIGA-------STGFRNAYELVTKAASTNVTVL 255
Cdd:COG3604 40 ALVLEESLELLALALSEALLAAQARQAALAARERQLFLGVPLRVGGeVLGVltldsrrPGAFSEEDLRLLETLASLAAVA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 256 LLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESelfgvergaftgahasragkferadggtlfldevgelp 335
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 336 lsaqakllrvLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAM 415
Cdd:COG3604 162 ----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHF 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 416 TARFCSLHAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVILApQNGWVEVEHLFLGAVPpatahacidksgklgeq 495
Cdd:COG3604 232 LEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILA-EGGVLDADDLAPGSRE----------------- 293
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1694441079 496 prggldlpgavldagvSLEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:COG3604 294 ----------------ALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKK 334
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
198-555 |
1.23e-81 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 265.43 E-value: 1.23e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 198 FEADSI---------VGRLLELREEVEAMRQSIACPRRIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFA 268
Cdd:PRK15424 180 YSAATVrqafedaldMTRMTLRHNTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 269 RALH--------ELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTGAH-ASRAGKFERADGGTLFLDEVGELPLSAQ 339
Cdd:PRK15424 260 QAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRrGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 340 AKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVE-----A 414
Cdd:PRK15424 340 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAEsflkqS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 415 MTARFCSLHAKRVAGITdKAMLALKNHRWPGNVRELENVIERgviLApqngwvevehLFLGAVP-PATAHACIDksgklg 493
Cdd:PRK15424 420 LAALSAPFSAALRQGLQ-QCETLLLHYDWPGNVRELRNLMER---LA----------LFLSVEPtPDLTPQFLQ------ 479
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1694441079 494 eqpRGGLDLPGAVLDAGVSLEALEQdiLQRAVQRAGGNLSAAARMLGMTRPQLNYRLKKQAL 555
Cdd:PRK15424 480 ---LLLPELARESAKTPAPRLLAAT--LQQALERFNGDKTAAANYLGISRTTLWRRLKAEAK 536
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
216-552 |
1.91e-78 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 256.71 E-value: 1.91e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 216 AMRQSIACPRRIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELI 295
Cdd:TIGR02329 200 ATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 296 ESELFGVERGAFTGAH-ASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDL 374
Cdd:TIGR02329 280 EAELFGYEEGAFTGARrGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCAL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 375 QDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVE--------AMTARFCSLHAKRVAGITDkamlALKNHRWPGN 446
Cdd:TIGR02329 360 TTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAeylvqaaaALRLPDSEAAAQVLAGVAD----PLQRYPWPGN 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 447 VRELENVIERGVILAPQNGWVEVEHLFLGAVPPATAhaciDKSGKLGEQPrggldlpgavlDAGVSLEALEQDILQRAVQ 526
Cdd:TIGR02329 436 VRELRNLVERLALELSAMPAGALTPDVLRALAPELA----EASGKGKTSA-----------LSLRERSRVEALAVRAALE 500
|
330 340
....*....|....*....|....*.
gi 1694441079 527 RAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:TIGR02329 501 RFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
248-550 |
4.22e-75 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 245.52 E-value: 4.22e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 248 ASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLF 327
Cdd:PRK15115 154 AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 328 LDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASD 407
Cdd:PRK15115 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTED 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 408 IPPLVEAMTARFCSLHAKRVAGITDKAMLALKNHRWPGNVRELENVIERGVIL--APQNGWVEVEHLFLG--AVPPATAH 483
Cdd:PRK15115 314 IPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALtsSPVISDALVEQALEGenTALPTFVE 393
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1694441079 484 AcidksgklgeqpRGGLDLpgavldagvslealeqDILQRAVQRAGGNLSAAARMLGMTRPQLnYRL 550
Cdd:PRK15115 394 A------------RNQFEL----------------NYLRKLLQITKGNVTHAARMAGRNRTEF-YKL 431
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
199-556 |
1.73e-74 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 244.39 E-value: 1.73e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 199 EADSIVGRLL-ELREEVEAMRQSIACPrrIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPR 277
Cdd:PRK10923 110 EAVALVERAIsHYQEQQQPRNIQVNGP--TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 278 KEAPFVAVNCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDE 357
Cdd:PRK10923 188 AKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGY 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 358 RTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVE---AMTARFCSLHAKRVAGITDKA 434
Cdd:PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARhflQVAARELGVEAKLLHPETEAA 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 435 MLALKnhrWPGNVRELENVIE-RGVILAPQNGWVE--VEHLFLGAVPPATAHACIDKSGKLGEQ------PRGGLDLpga 505
Cdd:PRK10923 348 LTRLA---WPGNVRQLENTCRwLTVMAAGQEVLIQdlPGELFESTVPESTSQMQPDSWATLLAQwadralRSGHQNL--- 421
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1694441079 506 VLDAgvsLEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKKQALQ 556
Cdd:PRK10923 422 LSEA---QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
193-464 |
4.26e-67 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 226.49 E-value: 4.26e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 193 ELTP-YFEADS----IVGRLLELREEVEAMRQ----SIACPRRIPNLIGASTGFRNAYELVTKAASTNVTVLLLGETGVG 263
Cdd:PRK10820 160 EITPvYLQDENdqhvLVGAVVMLRSTARMGRQlqnlAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTG 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 264 KERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLL 343
Cdd:PRK10820 240 KDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 344 RVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPPLVEAMTARFCSLH 423
Cdd:PRK10820 320 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQ 399
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1694441079 424 akrvaGITdKAMLA------LKNHRWPGNVRELENVIER------GVILAPQN 464
Cdd:PRK10820 400 -----GVP-RPKLAadlntvLTRYGWPGNVRQLKNAIYRaltqleGYELRPQD 446
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
230-556 |
1.15e-62 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 217.24 E-value: 1.15e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 230 LIGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGverGAFTG 309
Cdd:PRK11388 327 MPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 310 AHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYY 389
Cdd:PRK11388 404 SENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 390 RLNVYPVTIPPLRERASDIPPLVEAMTARFCSLHAKRVAgITDKAMLALKNHRWPGNVRELENVIERGVILAPQNgwvev 469
Cdd:PRK11388 484 ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSYRWPGNDFELRSVIENLALSSDNG----- 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 470 eHLFLGAVPPATahacidksgkLGEQPRGglDLPGAVLDAGVSLEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYR 549
Cdd:PRK11388 558 -RIRLSDLPEHL----------FTEQATD--DVSATRLSTSLSLAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRK 624
|
....*..
gi 1694441079 550 LKKQALQ 556
Cdd:PRK11388 625 MKQHGID 631
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
12-111 |
1.46e-48 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 163.46 E-value: 1.46e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 12 LRQLLRFSDKDGLIWLGEHRMVLLHTAALSELRKELIDSVGAEQARRILTRMGFASGLRDAELARKIRGAGNLVDAFVVG 91
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 1694441079 92 PQLHMLEGCVEVEPVRLDID 111
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
254-539 |
1.04e-44 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 165.78 E-value: 1.04e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 254 VLLLGETGVGKERFARALHELSPRK---EAPFVAVNCAALPDELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDE 330
Cdd:COG4650 211 ILLTGPTGAGKSQLARRIYELKKARhqvSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFLDE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 331 VGELPLSAQAKLLRVLQEGEIERLGDERTRKINVRLVAATNVDLQDAVAAGRFRRDLYYRLNVYPVTIPPLRERASDIPP 410
Cdd:COG4650 291 IGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIEP 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 411 LVEAMTARFCSLHAKRVAGITD--KAMLALKNH---RWPGNVRELENVIERGVILAPQngwvevehlflGAVPPATAHAC 485
Cdd:COG4650 371 NLDYELARFAREQGRRVRFNKEarARYLAFATSpeaLWSGNFRDLNASVTRMATLAEG-----------GRITVALVDEE 439
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1694441079 486 IDKSGKL--GEQPRGGLDLPGAVLDAGVsLEALeqDILQRA-------VQRAGGNLSAAARML 539
Cdd:COG4650 440 IARLRRLwqRAEAATGDDLLAELLGAEQ-AAEL--DLFDRVqlaavirVCRRSRSLSEAGRTL 499
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
229-454 |
1.51e-40 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 157.19 E-value: 1.51e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 229 NLIGASTGFRNAYELVtKAA----STNVTVLLLGETGVGKERFARALHE-------LSprKEAPFVAVNCAalpD----- 292
Cdd:COG1221 105 NLIGANGSLKNAIEQA-KAAilypPKGLHTLILGPTGVGKSFFAELMYEyaieigvLP--EDAPFVVFNCA---Dyannp 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 293 ELIESELFGVERGAFTGAHASRAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEIERLGD-ERTRKINVRLVAATN 371
Cdd:COG1221 179 QLLMSQLFGYVKGAFTGADKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGEtEKTRKANVRIIFATT 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 372 VDLQDAVAAgRFRRdlyyRLnvyPVTI--PPLRERasdipPLVE--AMTARFCSLHAKRVAG---ITDKAMLALKNHRWP 444
Cdd:COG1221 259 EDPESSLLK-TFLR----RI---PMVIklPSLEER-----SLEErlELIKHFFKEEAKRLNKpikVSKEVLKALLLYDCP 325
|
250
....*....|
gi 1694441079 445 GNVRELENVI 454
Cdd:COG1221 326 GNIGQLKSDI 335
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
126-184 |
7.01e-24 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 94.65 E-value: 7.01e-24
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1694441079 126 SWEAEVHVQQYGEMDHPVCWMMIGYASGYTSAFMGRFILFREVECAAMGTDHCRIVGKP 184
Cdd:smart00989 3 SVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVKP 61
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
236-400 |
1.90e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.45 E-value: 1.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 236 GFRNAYELVTKAASTNV--TVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFtgahas 313
Cdd:cd00009 2 GQEEAIEALREALELPPpkNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 314 RAGKFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEierlgDERTRKINVRLVAATNVDLqdavaAGRFRRDLYYRLNV 393
Cdd:cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRLDI 145
|
....*..
gi 1694441079 394 yPVTIPP 400
Cdd:cd00009 146 -RIVIPL 151
|
|
| COG1719 |
COG1719 |
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only]; |
39-186 |
1.13e-20 |
|
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
Pssm-ID: 441325 [Multi-domain] Cd Length: 137 Bit Score: 88.21 E-value: 1.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 39 ALSELRKELIDSVGaEQARRILTRMGFASGLRDAELARKirgagnLVDAFVVGPQLHMLEGcvevePVRLDIDGEAGKFY 118
Cdd:COG1719 7 FLVALFRALEEELG-IAAARVLYRAGKRIGKELAERFKE------EADLLEALKEFWKLSG-----WGILEIDELSEGPL 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1694441079 119 gEFIWRQSWEAEVhvqqYGEMDHPVCWMMIGYASGYTSAFMGRFILFREVECAAMGTDHCRIVGKPAE 186
Cdd:COG1719 75 -VITVEDSPECRG----LPNSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRPKE 137
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
231-401 |
3.07e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 87.01 E-value: 3.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 231 IGASTGFRNAYELVTKAASTNVTVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELieselfgvergaftga 310
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLEL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 311 hasragkFERADGGTLFLDEVGELPLSAQAKLLRVLQEGEierlgdertrKINVRLVAATNVDLQDAVAAGRFRRDLYYR 390
Cdd:pfam14532 65 -------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 1694441079 391 LNVYPVTIPPL 401
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
123-184 |
1.33e-14 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 68.47 E-value: 1.33e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1694441079 123 WRQSWEAEVHVQQYGEMDHPVCWMMIGYASGYTSAFMGRFILFREVECAAMGTDHCRIVGKP 184
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
253-391 |
1.24e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 68.55 E-value: 1.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 253 TVLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIES-ELFGVERGAFTGAHASRAGK-FERA---DGGTLF 327
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlLLIIVGGKKASGSGELRLRLaLALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1694441079 328 LDEVGELPLSAQAKLLRVLQEgeiERLGDERTRKINVRLVAATN--VDLQDAVAAGRFRRDLYYRL 391
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
513-552 |
2.09e-10 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 55.86 E-value: 2.09e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1694441079 513 LEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
254-371 |
3.05e-08 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 52.68 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 254 VLLLGETGVGKERFARALHELSPRKEAPFVAVNCAALPDELIESELFGVERGAFTGAHASRAGKferaDGGTLFLDEVGE 333
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPLVRAAR----EGEIAVLDEINR 77
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1694441079 334 LPLSAQAKLLRVLQEGEI---ERLGDERTRKINVRLVAATN 371
Cdd:pfam07728 78 ANPDVLNSLLSLLDERRLllpDGGELVKAAPDGFRLIATMN 118
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
513-552 |
1.14e-03 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 37.87 E-value: 1.14e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1694441079 513 LEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKK 552
Cdd:COG2901 40 LAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQ 79
|
|
| COG4567 |
COG4567 |
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ... |
512-554 |
1.83e-03 |
|
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains [Signal transduction mechanisms, Transcription];
Pssm-ID: 443624 [Multi-domain] Cd Length: 177 Bit Score: 39.51 E-value: 1.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1694441079 512 SLEALEQDILQRAVQRAGGNLSAAARMLGMTRPQLNYRLKKQA 554
Cdd:COG4567 132 SLDRLEWEHIQRVLAECDGNISATARALGMHRRTLQRKLAKRP 174
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
254-388 |
6.18e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 37.19 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 254 VLLLGETGVGKERFARAL-HELSprkeAPFVAVNCaalpdelieSELFGVERGAFTGAHASRAGKFERADGGTLFLDEVG 332
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVaKELG----APFIEISG---------SELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEID 67
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694441079 333 ELPLSAQAKLLRVLQEGE---IERLGDERTRKINVRLVAATN-VDLQDAVAAGRFRRDLY 388
Cdd:pfam00004 68 ALAGSRGSGGDSESRRVVnqlLTELDGFTSSNSKVIVIAATNrPDKLDPALLGRFDRIIE 127
|
|
| |
