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Conserved domains on  [gi|1678570858|gb|QCY09288|]
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FRG domain-containing protein (plasmid) [Burkholderia cepacia ATCC 25416]

Protein Classification

FRG domain-containing protein( domain architecture ID 10658176)

FRG domain-containing protein contains a conserved N-terminal (F/Y)RG motif

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
23-112 1.11e-27

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


:

Pssm-ID: 214898  Cd Length: 103  Bit Score: 102.41  E-value: 1.11e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678570858   23 LFRGQEVESWRLVPAIGR--APYQLRLRPNTEQRMLDEFKQRALPHVESTvDLTNADWLAIAQHHAMPTRLLDWSGSALS 100
Cdd:smart00901   6 LFRGQSDAYWPLVPSLFRkkGFYPDLLSSDDERRLLRNFKRQAPNRLDKS-PSDDLEWLALAQHYGLPTRLLDWTTNPLV 84

                           90
                   ....*....|..
gi 1678570858  101 ALWFAVKKPAVE 112
Cdd:smart00901  85 ALYFAVEDYSKE 96
 
Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
23-112 1.11e-27

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


Pssm-ID: 214898  Cd Length: 103  Bit Score: 102.41  E-value: 1.11e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678570858   23 LFRGQEVESWRLVPAIGR--APYQLRLRPNTEQRMLDEFKQRALPHVESTvDLTNADWLAIAQHHAMPTRLLDWSGSALS 100
Cdd:smart00901   6 LFRGQSDAYWPLVPSLFRkkGFYPDLLSSDDERRLLRNFKRQAPNRLDKS-PSDDLEWLALAQHYGLPTRLLDWTTNPLV 84

                           90
                   ....*....|..
gi 1678570858  101 ALWFAVKKPAVE 112
Cdd:smart00901  85 ALYFAVEDYSKE 96
FRG pfam08867
FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is ...
 23-109 3.58e-27

FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.


Pssm-ID: 430274  Cd Length: 93  Bit Score: 100.40  E-value: 3.58e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678570858  23 LFRGQEVESWRLVPAIGRApYQLRLRPNTEQRMLDEFKQRALPHVESTVDlTNADWLAIAQHHAMPTRLLDWSGSALSAL 102
Cdd:pfam08867   4 VYRGQRDADWRLIPSLYRL-GGKKPSLKLEKRLLREFKKYARPRLEEEPE-NDWDWLALAQHYGLPTRLLDWTYSPLVAL 81


                  ....*..
gi 1678570858 103 WFAVKKP 109
Cdd:pfam08867  82 YFATEDP 88
 
Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
23-112 1.11e-27

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


Pssm-ID: 214898  Cd Length: 103  Bit Score: 102.41  E-value: 1.11e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678570858   23 LFRGQEVESWRLVPAIGR--APYQLRLRPNTEQRMLDEFKQRALPHVESTvDLTNADWLAIAQHHAMPTRLLDWSGSALS 100
Cdd:smart00901   6 LFRGQSDAYWPLVPSLFRkkGFYPDLLSSDDERRLLRNFKRQAPNRLDKS-PSDDLEWLALAQHYGLPTRLLDWTTNPLV 84

                           90
                   ....*....|..
gi 1678570858  101 ALWFAVKKPAVE 112
Cdd:smart00901  85 ALYFAVEDYSKE 96
FRG pfam08867
FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is ...
 23-109 3.58e-27

FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.


Pssm-ID: 430274  Cd Length: 93  Bit Score: 100.40  E-value: 3.58e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1678570858  23 LFRGQEVESWRLVPAIGRApYQLRLRPNTEQRMLDEFKQRALPHVESTVDlTNADWLAIAQHHAMPTRLLDWSGSALSAL 102
Cdd:pfam08867   4 VYRGQRDADWRLIPSLYRL-GGKKPSLKLEKRLLREFKKYARPRLEEEPE-NDWDWLALAQHYGLPTRLLDWTYSPLVAL 81


                  ....*..
gi 1678570858 103 WFAVKKP 109
Cdd:pfam08867  82 YFATEDP 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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