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Conserved domains on  [gi|1609449302|gb|QBY15478|]
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hypothetical protein E4664_16470 [Acinetobacter baumannii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
beta_Kdo_transferase super family cl25364
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining ...
 332-424 2.39e-03

beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferases. They are part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.


The actual alignment was detected with superfamily member cd16438:

Pssm-ID: 474571  Cd Length: 254  Bit Score: 39.89  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1609449302 332 YDFLVKtlIHLNKNKEVNVFVKAHPSSymwneKGAVEELLEKYQLDNIYILpNNLNTNSIINFADYIVTAKGTAGLEFSC 411
Cdd:cd16438   120 YEVLVE--AADRLNPDLKIVFKEHPSD-----PKSYDYKELYKKHPRVIFA-NGNDTQELIEGAEAVITINSTVGIEALL 191

                          90
                  ....*....|...
gi 1609449302 412 LGIPAITAGKGYY 424
Cdd:cd16438   192 LGKPVITLGNAFY 204
 
Name Accession Description Interval E-value
beta_Kdo_transferase_KpsS_like cd16438
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a ...
 332-424 2.39e-03

beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.


Pssm-ID: 319746  Cd Length: 254  Bit Score: 39.89  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1609449302 332 YDFLVKtlIHLNKNKEVNVFVKAHPSSymwneKGAVEELLEKYQLDNIYILpNNLNTNSIINFADYIVTAKGTAGLEFSC 411
Cdd:cd16438   120 YEVLVE--AADRLNPDLKIVFKEHPSD-----PKSYDYKELYKKHPRVIFA-NGNDTQELIEGAEAVITINSTVGIEALL 191

                          90
                  ....*....|...
gi 1609449302 412 LGIPAITAGKGYY 424
Cdd:cd16438   192 LGKPVITLGNAFY 204
 
Name Accession Description Interval E-value
beta_Kdo_transferase_KpsS_like cd16438
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a ...
 332-424 2.39e-03

beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.


Pssm-ID: 319746  Cd Length: 254  Bit Score: 39.89  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1609449302 332 YDFLVKtlIHLNKNKEVNVFVKAHPSSymwneKGAVEELLEKYQLDNIYILpNNLNTNSIINFADYIVTAKGTAGLEFSC 411
Cdd:cd16438   120 YEVLVE--AADRLNPDLKIVFKEHPSD-----PKSYDYKELYKKHPRVIFA-NGNDTQELIEGAEAVITINSTVGIEALL 191

                          90
                  ....*....|...
gi 1609449302 412 LGIPAITAGKGYY 424
Cdd:cd16438   192 LGKPVITLGNAFY 204
beta_Kdo_transferase cd16436
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining ...
 342-432 6.44e-03

beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferases. They are part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.


Pssm-ID: 319744  Cd Length: 222  Bit Score: 38.29  E-value: 6.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1609449302 342 LNKNKEVNVFVKAHPSSYMWNEKGAVEEllEKYQLDNIYILPNNLNTNSIINFADYIVTAKGTAGLEFSCLGIPAITAGK 421
Cdd:cd16436   103 LEHNPDTPIIIKHHPDVRGGKDYGYLID--ETLSLERRVLLVHDVSLPSLLKRAGGVVTVNSTSGFEALLHGKPVKVLGL 180

                          90
                  ....*....|.
gi 1609449302 422 GYYYGFGITEE 432
Cdd:cd16436   181 PWYAGWGLTDD 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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