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Conserved domains on  [gi|1608348029|gb|QBX34107|]
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choline ABC transporter permease subunit [Paracoccus liaowanqingii]

Protein Classification

choline ABC transporter permease subunit( domain architecture ID 10799159)

choline ABC transporter permease subunit may be involved in the transport of choline and is the transmembrane subunit (TM) found in a periplasmic binding protein(PBP)-dependent ATP-binding cassette (ABC) transporter

Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
10-276 1.70e-145

choline ABC transporter, permease protein;


:

Pssm-ID: 188318  Cd Length: 267  Bit Score: 408.66  E-value: 1.70e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  10 DNKIPVGRTAKTLFDWLNANASGLFDAISVAMEALIDAILAGLEAPHPFLFIALAMALTWALQRRAGTCLLVGAGLLFIL 89
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  90 NQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATVIF 169
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 170 VLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPVVRA 249
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 1608348029 250 LNSVNTALGFESGIVIVVVAILLDRML 276
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
 
Name Accession Description Interval E-value
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
10-276 1.70e-145

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 408.66  E-value: 1.70e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  10 DNKIPVGRTAKTLFDWLNANASGLFDAISVAMEALIDAILAGLEAPHPFLFIALAMALTWALQRRAGTCLLVGAGLLFIL 89
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  90 NQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATVIF 169
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 170 VLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPVVRA 249
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 1608348029 250 LNSVNTALGFESGIVIVVVAILLDRML 276
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 7-277 5.25e-133

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 377.51  E-value: 5.25e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029   7 WVTDNKIPVGRTAKTLFDWLNANASGLFDAISVAMEALIDAILAGLEAPHPFLFIALAMALTWALqRRAGTCLLVGAGLL 86
Cdd:COG4176     3 EPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRL-RGWRLALFTALGLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  87 FILNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLAT 166
Cdd:COG4176    82 LIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVIAT 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 167 VIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPV 246
Cdd:COG4176   162 VIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQEV 241

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1608348029 247 VRALNSVNTALGFESGIVIVVVAILLDRMLR 277
Cdd:COG4176   242 LRALQRLDIGLGFEAGLAIVILAIILDRITQ 272
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
13-281 5.43e-63

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 201.86  E-value: 5.43e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  13 IPVGRTAKTLFDWLNANASGLFDAISVAMEALIDAI---LAGLEAPHPFLFIALamaLTWALQRRA-GTCLLVGagLLFI 88
Cdd:PRK10952   63 IPLDSWVTEGIDWVVTHFRPVFQGIRVPVDYILNGFqqlLLGMPAPVAIIVFAL---IAWQISGVGmGVATLVS--LIAI 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  89 LNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATVI 168
Cdd:PRK10952  138 GAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTII 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 169 FVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPVVR 248
Cdd:PRK10952  218 FALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLR 297

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1608348029 249 ALNSVNTALGFESGIVIVVVAILLDRMLRMEGR 281
Cdd:PRK10952  298 GIGRLDMGLATVGGVGIVILAIILDRLTQAVGR 330
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-272 2.27e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 2.27e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  97 MMQSLTLVLSACLVCMGLGVPIGIAAA-HRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMV---------PGLLAT 166
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 167 VIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPV 246
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*.
gi 1608348029 247 VRALNSVNTALGFESGIVIVVVAILL 272
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILL 186
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-272 8.95e-15

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 70.79  E-value: 8.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 115 GVPIGIAAA--HRPRLYGWMRPVLDLMQTLPTFVYLIPAIVF-----FGIGMVPGLLATVIFVLPAPIRLTQLGIASTPP 187
Cdd:pfam00528   1 GIPLGIIAAlrRGRRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 188 SLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGA-SGLGVPVVRALNSVNTALGFESGIVIV 266
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSwPGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 1608348029 267 VVAILL 272
Cdd:pfam00528 161 LILLLL 166
 
Name Accession Description Interval E-value
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
10-276 1.70e-145

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 408.66  E-value: 1.70e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  10 DNKIPVGRTAKTLFDWLNANASGLFDAISVAMEALIDAILAGLEAPHPFLFIALAMALTWALQRRAGTCLLVGAGLLFIL 89
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  90 NQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATVIF 169
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 170 VLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPVVRA 249
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 1608348029 250 LNSVNTALGFESGIVIVVVAILLDRML 276
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 7-277 5.25e-133

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 377.51  E-value: 5.25e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029   7 WVTDNKIPVGRTAKTLFDWLNANASGLFDAISVAMEALIDAILAGLEAPHPFLFIALAMALTWALqRRAGTCLLVGAGLL 86
Cdd:COG4176     3 EPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRL-RGWRLALFTALGLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  87 FILNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLAT 166
Cdd:COG4176    82 LIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVIAT 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 167 VIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPV 246
Cdd:COG4176   162 VIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQEV 241

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1608348029 247 VRALNSVNTALGFESGIVIVVVAILLDRMLR 277
Cdd:COG4176   242 LRALQRLDIGLGFEAGLAIVILAIILDRITQ 272
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
13-281 5.43e-63

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 201.86  E-value: 5.43e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  13 IPVGRTAKTLFDWLNANASGLFDAISVAMEALIDAI---LAGLEAPHPFLFIALamaLTWALQRRA-GTCLLVGagLLFI 88
Cdd:PRK10952   63 IPLDSWVTEGIDWVVTHFRPVFQGIRVPVDYILNGFqqlLLGMPAPVAIIVFAL---IAWQISGVGmGVATLVS--LIAI 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  89 LNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATVI 168
Cdd:PRK10952  138 GAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTII 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 169 FVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPVVR 248
Cdd:PRK10952  218 FALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLR 297

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1608348029 249 ALNSVNTALGFESGIVIVVVAILLDRMLRMEGR 281
Cdd:PRK10952  298 GIGRLDMGLATVGGVGIVILAIILDRLTQAVGR 330
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 92-277 4.99e-37

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 130.56  E-value: 4.99e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  92 GYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATVIFVL 171
Cdd:COG1174    15 GILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYAL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 172 PAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPVVRALN 251
Cdd:COG1174    95 LPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDGLQ 174

                         170       180
                  ....*....|....*....|....*.
gi 1608348029 252 SVNTALGFESGIVIVVVAILLDRMLR 277
Cdd:COG1174   175 LNNTALILAGAILVALLALLVDLLLA 200
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 88-277 8.04e-28

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 107.54  E-value: 8.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  88 ILNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATV 167
Cdd:COG0600    54 LASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIF 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 168 IFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGA-SGLGVPV 246
Cdd:COG0600   134 LGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGAsSGLGYLI 213

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1608348029 247 VRALNSVNTALGFESGIVIVVVAILLDRMLR 277
Cdd:COG0600   214 LDARQLLDTDLVFAAILVIGLLGLLLDLLLR 244
PRK10160 PRK10160
taurine ABC transporter permease TauC;
79-282 3.38e-16

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 76.36  E-value: 3.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  79 LLVGAGLLFILNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIG 158
Cdd:PRK10160   62 LLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIG 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 159 MVPGLLATVIFVLpAPIRLTQL-GIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALV 237
Cdd:PRK10160  142 ETSKILLIYLAIF-APVAMSALaGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELI 220

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1608348029 238 GAS-GLGVPVVRALNSVNTALGFESGIVIVVVAILLDRMLRMEGRK 282
Cdd:PRK10160  221 AATrGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRR 266
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-272 2.27e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 2.27e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  97 MMQSLTLVLSACLVCMGLGVPIGIAAA-HRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMV---------PGLLAT 166
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 167 VIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPV 246
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*.
gi 1608348029 247 VRALNSVNTALGFESGIVIVVVAILL 272
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILL 186
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-272 8.95e-15

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 70.79  E-value: 8.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 115 GVPIGIAAA--HRPRLYGWMRPVLDLMQTLPTFVYLIPAIVF-----FGIGMVPGLLATVIFVLPAPIRLTQLGIASTPP 187
Cdd:pfam00528   1 GIPLGIIAAlrRGRRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 188 SLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGA-SGLGVPVVRALNSVNTALGFESGIVIV 266
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSwPGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 1608348029 267 VVAILL 272
Cdd:pfam00528 161 LILLLL 166
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 93-275 1.88e-12

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 65.64  E-value: 1.88e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  93 YWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHR----PRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLATVI 168
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALLAARNitpsPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAF 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 169 FVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLGVPVVR 248
Cdd:TIGR01097 136 HTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDT 215

                         170       180       190
                  ....*....|....*....|....*....|
gi 1608348029 249 ALNSVN---TALGFesgIVIVVVAILLDRM 275
Cdd:TIGR01097 216 AIGLFDydeVSAII---LVILVVVVIIDLI 242
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 90-272 1.03e-11

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 63.59  E-value: 1.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  90 NQGYWTEMMQSLTLVLSACLVCMGLGVPIGIA-AAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFG-IGMVPGLLATV 167
Cdd:COG1177    56 DPRLLDALLNSLLIALLSTLLATVLGTPAALAlARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSaLGLSGGLWGLI 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 168 I----FVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASGLG 243
Cdd:COG1177   136 LahvvFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVT 215

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1608348029 244 VPVVRALNSVNTALGFE----SGIVIVVVAILL 272
Cdd:COG1177   216 TLPVYIYSMIRRGISPEinalSTLLILLSLLLL 248
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 89-272 2.25e-09

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 56.22  E-value: 2.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  89 LNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAA--------AHRPRLYGWMRPVLDLMQTLPtFVYLIPAIVFF----- 155
Cdd:COG2011     8 LWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLvltrpgglLPNPVLYRVLGVIVNIFRSIP-FIILLVALIPLtrliv 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 156 --GIGMVPGLLATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVI 233
Cdd:COG2011    87 gtSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAM 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1608348029 234 AALVGASGLGvpvvralnsvNTAL-----GFESGIVIVVVAILL 272
Cdd:COG2011   167 AGAVGGGGLG----------DLAIrygyqRFDTDVMLVTVVILI 200
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
58-272 6.01e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 56.32  E-value: 6.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  58 FLFIALAMALTWALQRRAGTCLLVGAGLLFILNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPrlyGWMRPVLD 137
Cdd:COG1178   301 GLLLPLLALLLWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRR---GRLARLLD 377

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 138 LMQTLPtfvYLIPAIVFfGIGMVPGL----------------LATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPR 201
Cdd:COG1178   378 RLAMLP---YAVPGIVL-GLGLLLLFnrplplllygtlailvLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPL 453

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608348029 202 QLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVGASG---LGVPVVRALNSVNTALGFESGIVIVVVAILL 272
Cdd:COG1178   454 RTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGfetLAVLIYQLASSGRYGEAAALALLLVLVSLLP 527
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 108-231 1.35e-08

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 54.55  E-value: 1.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 108 CLVCMGLGVPIGIAA-------AHRPRLYGWMRPVLDLMQTLPTFVY-------LIPAIVFFGIGMVPGLLATVIFVLPA 173
Cdd:TIGR00974  63 TLLAIVIAVPLGIGAaiylaeyANGSRFTKIIRFAVDILAGVPSIVVglfgygfFVLTYLGGGFSLLAGALALALLILPV 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1608348029 174 PIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGlnqtIMLSLSMV 231
Cdd:TIGR00974 143 IIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTG----IILSIARA 196
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 58-238 4.20e-08

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 53.23  E-value: 4.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  58 FLFIALAMALTWALQRRAGTCLLVGAGLL-----FILNQGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHRPrlyGWM 132
Cdd:COG1176    25 FFVLPLLLLLVYSFTTRDPYGGVVPGFTLenyarLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAP---PRW 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 133 RPVLDLMQTLPTFV-YLIPAIVFFGI----GMVPGLLATvIFVLPAPIRL--TQLGI--------------------AST 185
Cdd:COG1176   102 RNLLLLLVILPFWTsFLVRTYAWIVLlgrnGLLNSLLLA-LGLIDEPLRLlyTEFAVviglvyvylpfmvlplyaalEKI 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1608348029 186 PPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVG 238
Cdd:COG1176   181 DPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLG 233
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 91-273 1.78e-07

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 50.85  E-value: 1.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  91 QGYWTEMMQSLTLVLSACLVCMGLGVPIGIAAAHR----PRLYGWMRPVLDLMQTLPTFVYLIPAIVFFGIGMVPGLLAT 166
Cdd:COG3639    47 PDLLSALLETLAIALLGTLLGAVLALPLAFLAARNlapnPWVRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLAL 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 167 VIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAglnqTIMLSLSMVVIAA----LVGASGL 242
Cdd:COG3639   127 AIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS----YTLYRFEINIRAAtvlgLVGAGGI 202

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1608348029 243 GVPVVRALNSVN---TALGFesgIVIVVVAILLD 273
Cdd:COG3639   203 GLLLNEAIRLFQydeVAAIL---LVILVLVLLID 233
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
84-243 2.33e-07

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 50.50  E-value: 2.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  84 GLLFILNQGYWtemmQSLTLVLSACLVCMGLGVPIGIAA-AHRP-------RLYGWMRPVLDLMQTLP---TFVYLIP-- 150
Cdd:PRK10782    4 AMMWLLVRGVW----ETLAMTFVSGFFGFVIGLPVGVLLyVTRPgqiianaKLYRTLSALVNIFRSIPfiiLLVWMIPft 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 151 -AIVFFGIGMVPGLLATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLS 229
Cdd:PRK10782   80 rVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159

                         170
                  ....*....|....
gi 1608348029 230 MVVIAALVGASGLG 243
Cdd:PRK10782  160 YSAMGGAVGAGGLG 173
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
100-238 1.29e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.23  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 100 SLTLVLSACLVCMGLGVPIGIAAAHRP-RLYGWMRPVLDLMQTLPTFVYLIPAIVFFG--------------------IG 158
Cdd:COG1178    59 TLLLALLVTLLSLLLGVPLAWLLARTDfPGRRLLRWLLLLPLALPPYVVALAWIALFGpngllntllralfgleppdiYG 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 159 MVPGLLATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIAALVG 238
Cdd:COG1178   139 LGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLG 218
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
91-276 9.81e-04

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 39.92  E-value: 9.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029  91 QGYWT-----EMMQSLTLVLSACLVCMGLGVPIGIAAAHRPRLYGWMRPVLD----LMQTLPTFVYLIPAIVFFGIGMVP 161
Cdd:PRK11365   47 TAFWTlsasgELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDtsiqMLRNVPHLALIPLVILWFGIDESA 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 162 GLLATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTI-MLSLSMVVIAALVGAS 240
Cdd:PRK11365  127 KIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALgLMWLTLIVAETISANS 206

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1608348029 241 GLGVPVVRALNSVNTAlgfesgivIVVVAILLDRML 276
Cdd:PRK11365  207 GIGYLAMNAREFLQTD--------VVVVAIILYALL 234
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 100-220 1.06e-03

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 39.73  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 100 SLTLVLSACLVCMGLGVPIGIA-AAHRPRLYGWMRPVLDLMQTLPTFV-----------------YLIPA---IVFFGIG 158
Cdd:COG0555    59 SLGTALIAALINLVFGLPLAWVlVRYRFPGKRLVDALVDLPFALPTAVagiallllfgpngwlgqLLAPLgikVAFTPLG 138

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1608348029 159 MVpglLATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGL 220
Cdd:COG0555   139 IV---LAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGF 197
cysT CHL00187
sulfate transport protein; Provisional
 152-220 1.06e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 39.61  E-value: 1.06e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1608348029 152 IVFFGIGMvpgLLATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGL 220
Cdd:CHL00187  133 IVFTKLGV---LLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGL 198
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 155-242 1.41e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 39.60  E-value: 1.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 155 FGIGMVpgLLATVIFVLPAPIRLTQLGIASTPPSLTEAATAFGATPRQLLWKVELPSALPQIMAGLNQTIMLSLSMVVIA 234
Cdd:PRK15050  159 YSPGGV--ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIV 236


                  ....*...
gi 1608348029 235 ALVGASGL 242
Cdd:PRK15050  237 LFTGAKDV 244
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 118-229 2.04e-03

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 39.44  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608348029 118 IGIAAAHRPRLYGWMRPVLDLMQTLPTFVYLIPAIVFFgIGMVPGLL----ATVIFVlpapIRLTQL---------GIAS 184
Cdd:COG4986    84 YATLAAKSRRAEKILIPLLDILQSVPVLGFLSFTVTFF-IALFPGSLlgveLAAIFA----IFTSQAwnmafsfyqSLRT 158

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1608348029 185 TPPSLTEAATAFGATPRQLLWKVELPSALPqimaGLNQTIMLSLS 229
Cdd:COG4986   159 VPRDLDEAARIFRLSGWQRFWRLELPFAMP----GLVWNSMMSMS 199
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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