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Conserved domains on  [gi|152031673|sp|Q92766|]
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RecName: Full=Ras-responsive element-binding protein 1; Short=RREB-1; AltName: Full=Finger protein in nuclear bodies; AltName: Full=Raf-responsive zinc finger protein LZ321; AltName: Full=Zinc finger motif enhancer-binding protein 1; Short=Zep-1

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1526-1550 6.92e-06

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 43.90  E-value: 6.92e-06
                           10        20
                   ....*....|....*....|....*
gi 152031673  1526 DLTRHMRSHTGERPYKCQTCERTFT 1550
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
111-136 1.84e-05

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 42.74  E-value: 1.84e-05
                           10        20
                   ....*....|....*....|....*.
gi 152031673   111 SLDRHMLVHSGERPYKCTVCGQSFTT 136
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
671-695 3.64e-05

C2H2-type zinc-finger domain;


:

Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 42.15  E-value: 3.64e-05
                           10        20
                   ....*....|....*....|....*
gi 152031673   671 YQCNICDYIAADKAALIRHLRTHSG 695
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
64-246 1.16e-04

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.61  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152031673   64 SSYNCPLCEKICTTQHQLTMHIRQHNTDTGGAD-HSC--SICGKSLSSASSLDRHMLVHSGERPYKC--TVCGQSFTTNG 138
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKpFSCpySLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152031673  139 NM-----HRHMKIHEKDPNSATA-TAPPSPLKRRRLSSKRKLSHDAESEREdpapakkmvedgqsgdlekkadevFHCPV 212
Cdd:COG5048   368 NNeppqsLQQYKDLKNDKKSETLsNSCIRNFKRDSNLSLHIITHLSFRPYN------------------------CKNPP 423

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 152031673  213 CFKEFVCKYGLETHMETHSD-NPLRCDICCVTFRT 246
Cdd:COG5048   424 CSKSFNRHYNLIPHKKIHTNhAPLLCSILKSFRRD 458
LGT super family cl00478
Prolipoprotein diacylglyceryl transferase;
1422-1493 7.96e-04

Prolipoprotein diacylglyceryl transferase;


The actual alignment was detected with superfamily member PRK13108:

Pssm-ID: 469786 [Multi-domain]  Cd Length: 460  Bit Score: 43.81  E-value: 7.96e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 152031673 1422 DEKGDGASTAEEGPQPA---PEQEEKPPETPAEVVESAPGAGEAPAEKLAEETEGPSDGESAAEKRSSEKSDDDK 1493
Cdd:PRK13108  354 DRDGESTPAVEETSEADierEQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAK 428
zf-C2H2_6 pfam13912
C2H2-type zinc finger;
1513-1534 2.16e-03

C2H2-type zinc finger;


:

Pssm-ID: 433576  Cd Length: 27  Bit Score: 37.22  E-value: 2.16e-03
                           10        20
                   ....*....|....*....|..
gi 152031673  1513 VCSVCNKRFWSLQDLTRHMRSH 1534
Cdd:pfam13912    3 ECSECGKSFPSYQALGGHKKSH 24
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 1540-1562 2.38e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


:

Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.89  E-value: 2.38e-03
                           10        20
                   ....*....|....*....|...
gi 152031673  1540 YKCQTCERTFTLKHSLVRHQRIH 1562
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
ZnF_C2H2 smart00355
zinc finger;
1247-1268 6.62e-03

zinc finger;


:

Pssm-ID: 197676  Cd Length: 23  Bit Score: 35.52  E-value: 6.62e-03
                            10        20
                    ....*....|....*....|..
gi 152031673   1247 TCPHCPRVFPWASSLQRHMLTH 1268
Cdd:smart00355    2 RCPECGKVFKSKSALREHMRTH 23
 
Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1526-1550 6.92e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 43.90  E-value: 6.92e-06
                           10        20
                   ....*....|....*....|....*
gi 152031673  1526 DLTRHMRSHTGERPYKCQTCERTFT 1550
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
111-136 1.84e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 42.74  E-value: 1.84e-05
                           10        20
                   ....*....|....*....|....*.
gi 152031673   111 SLDRHMLVHSGERPYKCTVCGQSFTT 136
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
671-695 3.64e-05

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 42.15  E-value: 3.64e-05
                           10        20
                   ....*....|....*....|....*
gi 152031673   671 YQCNICDYIAADKAALIRHLRTHSG 695
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
64-246 1.16e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.61  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152031673   64 SSYNCPLCEKICTTQHQLTMHIRQHNTDTGGAD-HSC--SICGKSLSSASSLDRHMLVHSGERPYKC--TVCGQSFTTNG 138
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKpFSCpySLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152031673  139 NM-----HRHMKIHEKDPNSATA-TAPPSPLKRRRLSSKRKLSHDAESEREdpapakkmvedgqsgdlekkadevFHCPV 212
Cdd:COG5048   368 NNeppqsLQQYKDLKNDKKSETLsNSCIRNFKRDSNLSLHIITHLSFRPYN------------------------CKNPP 423

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 152031673  213 CFKEFVCKYGLETHMETHSD-NPLRCDICCVTFRT 246
Cdd:COG5048   424 CSKSFNRHYNLIPHKKIHTNhAPLLCSILKSFRRD 458
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 1422-1493 7.96e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.81  E-value: 7.96e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 152031673 1422 DEKGDGASTAEEGPQPA---PEQEEKPPETPAEVVESAPGAGEAPAEKLAEETEGPSDGESAAEKRSSEKSDDDK 1493
Cdd:PRK13108  354 DRDGESTPAVEETSEADierEQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAK 428
zf-C2H2_6 pfam13912
C2H2-type zinc finger;
1513-1534 2.16e-03

C2H2-type zinc finger;


Pssm-ID: 433576  Cd Length: 27  Bit Score: 37.22  E-value: 2.16e-03
                           10        20
                   ....*....|....*....|..
gi 152031673  1513 VCSVCNKRFWSLQDLTRHMRSH 1534
Cdd:pfam13912    3 ECSECGKSFPSYQALGGHKKSH 24
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 1540-1562 2.38e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.89  E-value: 2.38e-03
                           10        20
                   ....*....|....*....|...
gi 152031673  1540 YKCQTCERTFTLKHSLVRHQRIH 1562
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 208-230 3.38e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 36.47  E-value: 3.38e-03
                           10        20
                   ....*....|....*....|...
gi 152031673   208 FHCPVCFKEFVCKYGLETHMETH 230
Cdd:pfam13894    1 FKCPICGKSFSSKKSLKRHLKTH 23
ZnF_C2H2 smart00355
zinc finger;
125-147 3.43e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 36.29  E-value: 3.43e-03
                            10        20
                    ....*....|....*....|...
gi 152031673    125 YKCTVCGQSFTTNGNMHRHMKIH 147
Cdd:smart00355    1 YRCPECGKVFKSKSALREHMRTH 23
ZnF_C2H2 smart00355
zinc finger;
1247-1268 6.62e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 35.52  E-value: 6.62e-03
                            10        20
                    ....*....|....*....|..
gi 152031673   1247 TCPHCPRVFPWASSLQRHMLTH 1268
Cdd:smart00355    2 RCPECGKVFKSKSALREHMRTH 23
 
Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1526-1550 6.92e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 43.90  E-value: 6.92e-06
                           10        20
                   ....*....|....*....|....*
gi 152031673  1526 DLTRHMRSHTGERPYKCQTCERTFT 1550
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
111-136 1.84e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 42.74  E-value: 1.84e-05
                           10        20
                   ....*....|....*....|....*.
gi 152031673   111 SLDRHMLVHSGERPYKCTVCGQSFTT 136
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
671-695 3.64e-05

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 42.15  E-value: 3.64e-05
                           10        20
                   ....*....|....*....|....*
gi 152031673   671 YQCNICDYIAADKAALIRHLRTHSG 695
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
64-246 1.16e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 46.61  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152031673   64 SSYNCPLCEKICTTQHQLTMHIRQHNTDTGGAD-HSC--SICGKSLSSASSLDRHMLVHSGERPYKC--TVCGQSFTTNG 138
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKpFSCpySLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 152031673  139 NM-----HRHMKIHEKDPNSATA-TAPPSPLKRRRLSSKRKLSHDAESEREdpapakkmvedgqsgdlekkadevFHCPV 212
Cdd:COG5048   368 NNeppqsLQQYKDLKNDKKSETLsNSCIRNFKRDSNLSLHIITHLSFRPYN------------------------CKNPP 423

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 152031673  213 CFKEFVCKYGLETHMETHSD-NPLRCDICCVTFRT 246
Cdd:COG5048   424 CSKSFNRHYNLIPHKKIHTNhAPLLCSILKSFRRD 458
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 125-147 1.28e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 40.36  E-value: 1.28e-04
                           10        20
                   ....*....|....*....|...
gi 152031673   125 YKCTVCGQSFTTNGNMHRHMKIH 147
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 1422-1493 7.96e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.81  E-value: 7.96e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 152031673 1422 DEKGDGASTAEEGPQPA---PEQEEKPPETPAEVVESAPGAGEAPAEKLAEETEGPSDGESAAEKRSSEKSDDDK 1493
Cdd:PRK13108  354 DRDGESTPAVEETSEADierEQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAK 428
zf-C2H2_6 pfam13912
C2H2-type zinc finger;
1513-1534 2.16e-03

C2H2-type zinc finger;


Pssm-ID: 433576  Cd Length: 27  Bit Score: 37.22  E-value: 2.16e-03
                           10        20
                   ....*....|....*....|..
gi 152031673  1513 VCSVCNKRFWSLQDLTRHMRSH 1534
Cdd:pfam13912    3 ECSECGKSFPSYQALGGHKKSH 24
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 1540-1562 2.38e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.89  E-value: 2.38e-03
                           10        20
                   ....*....|....*....|...
gi 152031673  1540 YKCQTCERTFTLKHSLVRHQRIH 1562
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 208-230 3.38e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 36.47  E-value: 3.38e-03
                           10        20
                   ....*....|....*....|...
gi 152031673   208 FHCPVCFKEFVCKYGLETHMETH 230
Cdd:pfam13894    1 FKCPICGKSFSSKKSLKRHLKTH 23
ZnF_C2H2 smart00355
zinc finger;
125-147 3.43e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 36.29  E-value: 3.43e-03
                            10        20
                    ....*....|....*....|...
gi 152031673    125 YKCTVCGQSFTTNGNMHRHMKIH 147
Cdd:smart00355    1 YRCPECGKVFKSKSALREHMRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 97-119 3.49e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.51  E-value: 3.49e-03
                           10        20
                   ....*....|....*....|...
gi 152031673    97 HSCSICGKSLSSASSLDRHMLVH 119
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 125-147 5.01e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 36.08  E-value: 5.01e-03
                           10        20
                   ....*....|....*....|...
gi 152031673   125 YKCTVCGQSFTTNGNMHRHMKIH 147
Cdd:pfam13894    1 FKCPICGKSFSSKKSLKRHLKTH 23
ZnF_C2H2 smart00355
zinc finger;
1247-1268 6.62e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 35.52  E-value: 6.62e-03
                            10        20
                    ....*....|....*....|..
gi 152031673   1247 TCPHCPRVFPWASSLQRHMLTH 1268
Cdd:smart00355    2 RCPECGKVFKSKSALREHMRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
685-706 8.41e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 8.41e-03
                           10        20
                   ....*....|....*....|..
gi 152031673   685 ALIRHLRTHSGERPYICKICHY 706
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGK 22
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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