RecName: Full=Small ribosomal subunit protein uS12cz/uS12cy; AltName: Full=30S ribosomal protein S12, chloroplastic
30S ribosomal protein S12( domain architecture ID 17564814)
30S ribosomal protein S12 assists in rRNA folding and the binding of other proteins during small subunit assembly
List of domain hits
Name | Accession | Description | Interval | E-value | |||
RpsL | COG0048 | Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S12 ... |
1-123 | 1.68e-87 | |||
Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S12 is part of the Pathway/BioSystem: Ribosome 30S subunit : Pssm-ID: 439818 Cd Length: 124 Bit Score: 249.74 E-value: 1.68e-87
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Name | Accession | Description | Interval | E-value | |||
RpsL | COG0048 | Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S12 ... |
1-123 | 1.68e-87 | |||
Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S12 is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 439818 Cd Length: 124 Bit Score: 249.74 E-value: 1.68e-87
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rps12 | CHL00051 | ribosomal protein S12 |
1-123 | 6.69e-86 | |||
ribosomal protein S12 Pssm-ID: 176992 Cd Length: 123 Bit Score: 245.71 E-value: 6.69e-86
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rpsL_bact | TIGR00981 | ribosomal protein S12, bacterial/organelle; This model recognizes ribosomal protein S12 of ... |
1-123 | 5.52e-73 | |||
ribosomal protein S12, bacterial/organelle; This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 130054 Cd Length: 124 Bit Score: 213.11 E-value: 5.52e-73
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Ribosomal_S12 | cd03368 | S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the ... |
3-110 | 1.90e-66 | |||
S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code. Pssm-ID: 239466 Cd Length: 108 Bit Score: 195.82 E-value: 1.90e-66
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Ribosom_S12_S23 | pfam00164 | Ribosomal protein S12/S23; This protein is known as S12 in bacteria and archaea and S23 in ... |
12-123 | 1.51e-44 | |||
Ribosomal protein S12/S23; This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Pssm-ID: 395112 Cd Length: 114 Bit Score: 140.67 E-value: 1.51e-44
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Name | Accession | Description | Interval | E-value | |||
RpsL | COG0048 | Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S12 ... |
1-123 | 1.68e-87 | |||
Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S12 is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 439818 Cd Length: 124 Bit Score: 249.74 E-value: 1.68e-87
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rps12 | CHL00051 | ribosomal protein S12 |
1-123 | 6.69e-86 | |||
ribosomal protein S12 Pssm-ID: 176992 Cd Length: 123 Bit Score: 245.71 E-value: 6.69e-86
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rpsL_bact | TIGR00981 | ribosomal protein S12, bacterial/organelle; This model recognizes ribosomal protein S12 of ... |
1-123 | 5.52e-73 | |||
ribosomal protein S12, bacterial/organelle; This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 130054 Cd Length: 124 Bit Score: 213.11 E-value: 5.52e-73
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Ribosomal_S12 | cd03368 | S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the ... |
3-110 | 1.90e-66 | |||
S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code. Pssm-ID: 239466 Cd Length: 108 Bit Score: 195.82 E-value: 1.90e-66
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Ribosom_S12_S23 | pfam00164 | Ribosomal protein S12/S23; This protein is known as S12 in bacteria and archaea and S23 in ... |
12-123 | 1.51e-44 | |||
Ribosomal protein S12/S23; This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Pssm-ID: 395112 Cd Length: 114 Bit Score: 140.67 E-value: 1.51e-44
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PTZ00115 | PTZ00115 | 40S ribosomal protein S12; Provisional |
20-120 | 5.20e-41 | |||
40S ribosomal protein S12; Provisional Pssm-ID: 240276 Cd Length: 290 Bit Score: 137.28 E-value: 5.20e-41
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Ribosomal_S12_like | cd00319 | Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, ... |
20-100 | 6.36e-16 | |||
Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins. S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code. Pssm-ID: 238196 Cd Length: 95 Bit Score: 67.42 E-value: 6.36e-16
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Ribosomal_S23 | cd03367 | S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the ... |
12-99 | 5.45e-13 | |||
S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center. It interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes the translocation of the growing peptidyl-tRNA to the P site to make room for the next aminoacyl-tRNA at the A (acceptor) site. Through its interaction with eEF2, S23 may play an important role in translocation. Also members of this subfamily are the archaeal 30S ribosomal S12 proteins. Prokaryotic S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as control element for the rRNA- and tRNA-driven movements of translocation. S12 and S23 are also implicated in translation accuracy. Antibiotics such as streptomycin bind S12/S23 and cause the ribosome to misread the genetic code. Pssm-ID: 239465 Cd Length: 115 Bit Score: 60.36 E-value: 5.45e-13
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rps12P | PRK04211 | 30S ribosomal protein S12P; Reviewed |
11-116 | 4.83e-10 | |||
30S ribosomal protein S12P; Reviewed Pssm-ID: 235257 Cd Length: 145 Bit Score: 53.42 E-value: 4.83e-10
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PTZ00067 | PTZ00067 | 40S ribosomal S23; Provisional |
17-99 | 2.62e-08 | |||
40S ribosomal S23; Provisional Pssm-ID: 185422 Cd Length: 143 Bit Score: 48.97 E-value: 2.62e-08
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Blast search parameters | ||||
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