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Conserved domains on  [gi|68053180|sp|Q70Y15|]
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RecName: Full=Small ribosomal subunit protein bS16c; AltName: Full=30S ribosomal protein S16, chloroplastic

Protein Classification

30S ribosomal protein S16( domain architecture ID 10000001)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-78 9.96e-48

ribosomal protein S16


:

Pssm-ID: 176950  Cd Length: 82  Bit Score: 145.94  E-value: 9.96e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 68053180   1 MVKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTVTVHDISKKAEVFK 78
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFK 78
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-78 9.96e-48

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 145.94  E-value: 9.96e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 68053180   1 MVKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTVTVHDISKKAEVFK 78
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFK 78
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-77 6.16e-31

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 103.09  E-value: 6.16e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 68053180    2 VKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQ--TYSNVPAILYFLEKGAQPTVTVHDISKKAEVF 77
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 3.86e-27

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 93.57  E-value: 3.86e-27
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 68053180  1 MVKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKN--QTYSNVPAILYFLEKGAQPTVTVHDISKKA 74
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 1.66e-19

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 73.95  E-value: 1.66e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 68053180    8 RCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYS----NVPAILYFLEKGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPrvklDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-78 9.96e-48

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 145.94  E-value: 9.96e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 68053180   1 MVKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTVTVHDISKKAEVFK 78
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFK 78
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-77 6.16e-31

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 103.09  E-value: 6.16e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 68053180    2 VKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQ--TYSNVPAILYFLEKGAQPTVTVHDISKKAEVF 77
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-74 3.86e-27

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 93.57  E-value: 3.86e-27
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 68053180  1 MVKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKN--QTYSNVPAILYFLEKGAQPTVTVHDISKKA 74
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 1.66e-19

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 73.95  E-value: 1.66e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 68053180    8 RCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYS----NVPAILYFLEKGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPrvklDEERIKYWLGVGAQPT 61
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-70 2.20e-18

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 74.43  E-value: 2.20e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 68053180    2 VKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKN--QTYSNVPAILYFLEKGAQPTVTVHDI 70
Cdd:PRK14521   3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNpaTVDLNFDRAVYWLMNGAQPTDTARNI 73
rpsP PRK14520
30S ribosomal protein S16; Provisional
 2-73 2.62e-14

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 63.17  E-value: 2.62e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 68053180    2 VKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYSNV--PAILYFLEKGAQPTVTVHDISKK 73
Cdd:PRK14520   3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIdsERAQYWLSVGAQPTEPVLALLKI 76
rpsP PRK14522
30S ribosomal protein S16; Provisional
 2-64 1.45e-10

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 52.69  E-value: 1.45e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 68053180    2 VKLRLKRCGRKQRVIYRIVAIDVRSRRDGRALRKVGFYDPIKNQTYS-NVPAILYFLEKGAQPT 64
Cdd:PRK14522   3 LKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYQlKSERIFYWLNQGAELT 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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