NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|218512041|sp|Q03591|]
View 

RecName: Full=Complement factor H-related protein 1; Short=FHR-1; AltName: Full=H factor-like protein 1; Short=FHL-1; Short=H-factor-like 1; AltName: Full=H36; Flags: Precursor

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 107-329 1.30e-20

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 89.33  E-value: 1.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 107 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAHIlsrQMSKYPSGERVRYECRSPYEMFGD 185
Cdd:PHA02927  47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 186 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 259
Cdd:PHA02927 122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218512041 260 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 329
Cdd:PHA02927 199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 107-329 1.30e-20

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 89.33  E-value: 1.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 107 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAHIlsrQMSKYPSGERVRYECRSPYEMFGD 185
Cdd:PHA02927  47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 186 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 259
Cdd:PHA02927 122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218512041 260 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 329
Cdd:PHA02927 199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 208-262 1.50e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 1.50e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041 208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:cd00033    1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 208-262 1.43e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.60  E-value: 1.43e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041   208 CGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
208-262 1.40e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.49  E-value: 1.40e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041  208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 107-329 1.30e-20

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 89.33  E-value: 1.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 107 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAHIlsrQMSKYPSGERVRYECRSPYEMFGD 185
Cdd:PHA02927  47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 186 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 259
Cdd:PHA02927 122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218512041 260 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 329
Cdd:PHA02927 199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
PHA02831 PHA02831
EEV host range protein; Provisional
 102-276 1.01e-10

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 61.16  E-value: 1.01e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 102 QTHLEGDTVQIICNTGYrlqnNENNISCVERGWSTPPKCRSTdTSCVNPPTVQNAHILSRQmSKYPSGERVRYECR---- 177
Cdd:PHA02831  38 KVYEENENLEYKCNNNF----DKVFVTCNNGSWSTKNMCIGK-RNCKDPVTILNGYIKNKK-DQYSFGDSVTYACKvnkl 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 178 SPYEMFGDEEVMCLNGNWT-EPPQCKDSTGKCgppPPIDNGDITSFPLSVYApASSVEYQCQNLYQLEGNKRITCR-NGQ 255
Cdd:PHA02831 112 EKYSIVGNETVKCINKQWVpKYPVCKLIRCKY---PALQNGFLNVFEKKFYY-GDIVNFKCKKGFILLGSSVSTCDiNSI 187

                        170       180
                 ....*....|....*....|..
gi 218512041 256 W-SEPPKCLHPCViSREIMENY 276
Cdd:PHA02831 188 WyPGIPKCVKDKV-HNEIQPNY 208
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 48-201 4.15e-10

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 59.28  E-value: 4.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041  48 GEVFYYSCE--YNFVSPSKSFWTRITCTEEGWSP-TPKC--LRLCFFPFVENGHSESSGQTHLEGDTVQIICNTGYRLQN 122
Cdd:PHA02927 105 GSSITYSCNsgYQLIGESKSYCELGSTGSMVWNPeAPICesVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIG 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 123 NeNNISCVERGWSTPPKCRStdTSCVNpPTVQNAHILSRQMSKYPSGERVRYECRSPYEMFGDEEVMCLNGNWTEP--PQ 200
Cdd:PHA02927 185 N-SGVLCSGGEWSDPPTCQI--VKCPH-PTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPK 260


                 .
gi 218512041 201 C 201
Cdd:PHA02927 261 C 261
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 208-262 1.50e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 1.50e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041 208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:cd00033    1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 143-329 4.36e-09

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 56.54  E-value: 4.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 143 TDTSCV---NPPTVQNAHILSRQMSKYPSGERVRYECRSPyemFGDEEVMCLNGNWTEPPQCKDSTgKCGPPPPIDNGDI 219
Cdd:PHA02831  14 SKTWCIcvfNKNDAKYSNVDSYENKVYEENENLEYKCNNN---FDKVFVTCNNGSWSTKNMCIGKR-NCKDPVTILNGYI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 220 TSfPLSVYAPASSVEYQCQ----NLYQLEGNKRITCRNGQW-SEPP-----KCLHPcVISREIMENYnialrwtaKQKLY 289
Cdd:PHA02831  90 KN-KKDQYSFGDSVTYACKvnklEKYSIVGNETVKCINKQWvPKYPvckliRCKYP-ALQNGFLNVF--------EKKFY 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 218512041 290 LrtGESAEFVCKRGYRLSSrshTLRTTCWDGKLEYPTCAK 329
Cdd:PHA02831 160 Y--GDIVNFKCKKGFILLG---SSVSTCDINSIWYPGIPK 194
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 208-262 1.43e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.60  E-value: 1.43e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041   208 CGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 147-202 2.61e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 49.77  E-value: 2.61e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 218512041 147 CVNPPTVQNAHILSRQmSKYPSGERVRYECRSPYEMFGDEEVMCL-NGNWT-EPPQCK 202
Cdd:cd00033    1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
208-262 1.40e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.49  E-value: 1.40e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041  208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 147-201 1.83e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.14  E-value: 1.83e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041   147 CVNPPTVQNAHILSRQmSKYPSGERVRYECRSPYEMFGDEEVMCL-NGNWT-EPPQC 201
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 147-329 2.47e-07

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 51.59  E-value: 2.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 147 CVNPPTVQNAHIlSRQMSKYPSGERVRYECRSPYEMFGDEEVMCL----NGNWT-EPPQCKdsTGKCGPPPPIDNGDITS 221
Cdd:PHA02639  22 CDKPDDISNGFI-TELMEKYEIGKLIEYTCNTDYALIGDRFRTCIkdknNAIWSnKAPFCM--LKECNDPPSIINGKIYN 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 222 fPLSVYAPASSVEYQCQN----LYQLEGNKRITC-RNGQWS-EPPKCLHPCVISREIMENYNIALrwTAKQKLYLRTgeS 295
Cdd:PHA02639  99 -KREMYKVGDEIYYVCNEhkgvQYSLVGNEKITCiQDKSWKpDPPICKMINCRFPALQNGYINGI--PSNKKFYYKT--R 173

                        170       180       190
                 ....*....|....*....|....*....|....
gi 218512041 296 AEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 329
Cdd:PHA02639 174 VGFSCKSGFDLVGEKYSTCNINATWFPSIPTCVR 207
Sushi pfam00084
Sushi repeat (SCR repeat);
147-201 3.53e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 46.34  E-value: 3.53e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 218512041  147 CVNPPTVQNAHIlSRQMSKYPSGERVRYECRSPYEMFGDEEVMCL-NGNWT-EPPQC 201
Cdd:pfam00084   1 CPPPPDIPNGKV-SATKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 90-141 2.16e-05

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 41.68  E-value: 2.16e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 218512041  90 PFVENGHSESSGQTHLEGDTVQIICNTGYRLQNNEnNISCVERG-WS-TPPKCR 141
Cdd:cd00033    5 PVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSS-TITCTENGgWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 90-140 2.12e-04

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 38.66  E-value: 2.12e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 218512041    90 PFVENGHSESSGQTHLEGDTVQIICNTGYRLQNNEnNISCVERG-WS-TPPKC 140
Cdd:smart00032   5 PDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSS-TITCLENGtWSpPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 165-257 4.46e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 41.61  E-value: 4.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218512041 165 KYPSGERVRYECRSPYEMFGDEEVMCLNGNWTEPPQCKDstgKCGpPPPIDNGDITSfplSVYAPASSVEYQCQNLYQLE 244
Cdd:PHA02954 146 KYSFGEHITINCDVGYEVIGASYISCTANSWNVIPSCQQ---KCD-IPSLSNGLISG---STFSIGGVIHLSCKSGFTLT 218

                         90
                 ....*....|...
gi 218512041 245 GNKRITCRNGQWS 257
Cdd:PHA02954 219 GSPSSTCIDGKWN 231
PHA02817 PHA02817
EEV Host range protein; Provisional
 201-262 5.30e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 40.69  E-value: 5.30e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 218512041 201 CKDSTGKCGPPPPIDNGDITSfPLSVYAPASSVEYQCQN-----LYQLEGNKRITC-RNGQWS-EPPKC 262
Cdd:PHA02817  17 SLCDLNKCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNntrgvRYTLVGEKNIICeKDGKWNkEFPVC 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH