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Conserved domains on  [gi|1405942288|gb|PZX82105|]
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alcohol dehydrogenase [Klebsiella variicola]

Protein Classification

c-type cytochrome( domain architecture ID 11449528)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Thermus thermophilus cytochrome c-552, which is a monoheme basic protein that appears to function as an electron donor to cytochrome oxidase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
216-407 2.69e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


:

Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 96.17  E-value: 2.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 216 LAGSNAPIDGWVASSLRGENRDGLGTWSEAELAEFLKTGRNDKSVVFGGMSDVVEHSLQYLsddditAIARYLKSLPPLG 295
Cdd:COG2010     4 LGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAAL------ALALLLALLLAAA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 296 GKQTPAPVEDSVAKdlwkgndsktGAALYVDNCAACHRTDGAGYKRAFPSLKGNPvVQTEDATSLIHIVLTGSTTPAvkd 375
Cdd:COG2010    78 AADAPAADAEALAR----------GKALYEQNCAACHGADGKGGLGAAPNLTDDA-LYGGDPEALVETILNGRPGGA--- 143

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1405942288 376 avsnltMPSFGWRLDDQQVADVVNFIRTSWGN 407
Cdd:COG2010   144 ------MPAFGGQLSDEEIAALAAYLRSLSGN 169
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
8-130 8.54e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


:

Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.01  E-value: 8.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288   8 ALVLGALSCAAFAEEAPADSNLIKQGEYLARAgDCVACHTNGKTGKPfaGGLPmetpigtiystNITPDKEHGIGGytfE 87
Cdd:COG2010    67 ALLLALLLAAAAADAPAADAEALARGKALYEQ-NCAACHGADGKGGL--GAAP-----------NLTDDALYGGDP---E 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1405942288  88 EFDDAVRKGVRKdgstlyPAMpyPSFA-RISEADMRAMYAYFMH 130
Cdd:COG2010   130 ALVETILNGRPG------GAM--PAFGgQLSDEEIAALAAYLRS 165
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
216-407 2.69e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 96.17  E-value: 2.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 216 LAGSNAPIDGWVASSLRGENRDGLGTWSEAELAEFLKTGRNDKSVVFGGMSDVVEHSLQYLsddditAIARYLKSLPPLG 295
Cdd:COG2010     4 LGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAAL------ALALLLALLLAAA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 296 GKQTPAPVEDSVAKdlwkgndsktGAALYVDNCAACHRTDGAGYKRAFPSLKGNPvVQTEDATSLIHIVLTGSTTPAvkd 375
Cdd:COG2010    78 AADAPAADAEALAR----------GKALYEQNCAACHGADGKGGLGAAPNLTDDA-LYGGDPEALVETILNGRPGGA--- 143

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1405942288 376 avsnltMPSFGWRLDDQQVADVVNFIRTSWGN 407
Cdd:COG2010   144 ------MPAFGGQLSDEEIAALAAYLRSLSGN 169
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 320-405 4.23e-15

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 70.26  E-value: 4.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 320 GAALYVDNCAACHRTDGAGYKRAFPSLKGNPVVQTEDATSLIHIVLTGSTTPAV--KDAVSNLTMPSFgWRLDDQQVADV 397
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVdrAGGPPGTGMPAF-DGLTDEEIADL 81


                  ....*...
gi 1405942288 398 VNFIRTSW 405
Cdd:pfam00034  82 VAYLLSLS 89
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 284-402 1.75e-06

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 49.51  E-value: 1.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 284 IARYLKSLPPLGGKQTPAPVEDSVAKDLWKGNDSKTGAALYVDNCAACHRTDGAGYKrAFPSLKGNPVVQTEDATSLIHI 363
Cdd:TIGR00782  74 IKKFNEKNAAKWAKLAQTPLEDIAKDPELKQYARNAGAAIFRTWCAQCHGSGAGGAK-GFPNLLDNDWLWGGTLEGIHTT 152

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1405942288 364 VLTGSTTPAVKDAVSNlTMPSFGWRLDDQQVADVVNFIR 402
Cdd:TIGR00782 153 IKHGIRDPDDGDTYVG-EMPAFGPLLEEADIKDVASYVM 190
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
8-130 8.54e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.01  E-value: 8.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288   8 ALVLGALSCAAFAEEAPADSNLIKQGEYLARAgDCVACHTNGKTGKPfaGGLPmetpigtiystNITPDKEHGIGGytfE 87
Cdd:COG2010    67 ALLLALLLAAAAADAPAADAEALARGKALYEQ-NCAACHGADGKGGL--GAAP-----------NLTDDALYGGDP---E 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1405942288  88 EFDDAVRKGVRKdgstlyPAMpyPSFA-RISEADMRAMYAYFMH 130
Cdd:COG2010   130 ALVETILNGRPG------GAM--PAFGgQLSDEEIAALAAYLRS 165
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 39-130 1.88e-03

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 37.52  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288  39 AGDCVACHTNGKTGKPFAGGLPmeTPIGTIYSTNITPDKEHGIGGYtfeefddavrKGVRKDGSTLYPAMPYPSFARISE 118
Cdd:pfam00034   8 AANCAACHGVNGEGAGAGGPDL--AGLAARYPGDALGAIRENKHAI----------GGGGVDRAGGPPGTGMPAFDGLTD 75

                          90
                  ....*....|..
gi 1405942288 119 ADMRAMYAYFMH 130
Cdd:pfam00034  76 EEIADLVAYLLS 87
PRK13697 PRK13697
cytochrome c6; Provisional
 316-401 5.83e-03

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 36.30  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 316 DSKTGAALYVDNCAACHrTDGAGYKRAFPSLKGNPVVQ--TEDATSLIHIVLTGsttpavKDAvsnltMPSFGWRLDDQQ 393
Cdd:PRK13697   27 DAANGEQVFSANCASCH-AGGKNLVNAGKTLKKADLEKygMYSLEAITAQVTNG------KNA-----MPAFKDRLSPDQ 94


                  ....*...
gi 1405942288 394 VADVVNFI 401
Cdd:PRK13697   95 IEDVAAYV 102
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
216-407 2.69e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 96.17  E-value: 2.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 216 LAGSNAPIDGWVASSLRGENRDGLGTWSEAELAEFLKTGRNDKSVVFGGMSDVVEHSLQYLsddditAIARYLKSLPPLG 295
Cdd:COG2010     4 LGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAAL------ALALLLALLLAAA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 296 GKQTPAPVEDSVAKdlwkgndsktGAALYVDNCAACHRTDGAGYKRAFPSLKGNPvVQTEDATSLIHIVLTGSTTPAvkd 375
Cdd:COG2010    78 AADAPAADAEALAR----------GKALYEQNCAACHGADGKGGLGAAPNLTDDA-LYGGDPEALVETILNGRPGGA--- 143

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1405942288 376 avsnltMPSFGWRLDDQQVADVVNFIRTSWGN 407
Cdd:COG2010   144 ------MPAFGGQLSDEEIAALAAYLRSLSGN 169
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 320-405 4.23e-15

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 70.26  E-value: 4.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 320 GAALYVDNCAACHRTDGAGYKRAFPSLKGNPVVQTEDATSLIHIVLTGSTTPAV--KDAVSNLTMPSFgWRLDDQQVADV 397
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVdrAGGPPGTGMPAF-DGLTDEEIADL 81


                  ....*...
gi 1405942288 398 VNFIRTSW 405
Cdd:pfam00034  82 VAYLLSLS 89
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 177-422 6.72e-15

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 73.35  E-value: 6.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 177 VLERGRYLVEGLGHCGACHTPRSLTMqekalsesegddylAGSNAPIDGWVASSlrgenrDGLGTWSEAELAEFLKTGRN 256
Cdd:COG3258    11 AARRGEELFTNGLSCASCHLDAGTKP--------------WGVAAAYPAYRARN------GKVVTLEDRINGCFTRSMNG 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 257 DKsvvfggmsdvvehslQYLSDDDITAIARYLKSL---PPLGGKQTPAPVEDSVAKDLWKgnDSKTGAALYVDNCAACHR 333
Cdd:COG3258    71 KP---------------LPLDSAEMKALVAYLRWLsrgLPVGVKLDGRGLPKLPKPAASA--DVERGKALYAERCASCHG 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 334 TDGAGYKRA-----FPSLKGNPVvqtedatslihiVLTGSTTPAVK---DAVSNLTMPSF-GWRLDDQQVADVVNFIRTs 404
Cdd:COG3258   134 ADGEGQGRAdgqygFPPLWGGDS------------YNDGAGMARLGtlaDFIKGRNMPLGkPGSLSDDEAWDVAAYVRS- 200

                         250
                  ....*....|....*...
gi 1405942288 405 wgNNAPAVSASDVAKVRK 422
Cdd:COG3258   201 --LPRPVPRKTDVPAVRK 216
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
318-401 2.08e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 56.26  E-value: 2.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 318 KTGAALYVDNCAACHRTDGAGykrafPSLKGNPVvqteDATSLIHIVLTGSTtpavkdavsnlTMPSFGWRLDDQQVADV 397
Cdd:pfam13442   4 AAGEALYAANCASCHGTGGAG-----PSLAGRAL----PPEALVDIIRNGKG-----------AMPAFGGDLSDEELEAL 63


                  ....
gi 1405942288 398 VNFI 401
Cdd:pfam13442  64 AAYL 67
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
316-403 8.85e-07

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 47.03  E-value: 8.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 316 DSKTGAAlYVDNCAACHRTDGAG-YKRAFPSLKGnpvvQTEDAtslIHIVLTGSTTPAVKDAVsnltMPSFGWRLDDQQV 394
Cdd:COG2863    14 DAARGKA-YAAACAACHGADGEGnPGGGAPRLAG----QHAEY---LVAQLKAFRSGARKNGV----MPAIAKGLSDEDI 81


                  ....*....
gi 1405942288 395 ADVVNFIRT 403
Cdd:COG2863    82 KALAAYIAS 90
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 284-402 1.75e-06

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 49.51  E-value: 1.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 284 IARYLKSLPPLGGKQTPAPVEDSVAKDLWKGNDSKTGAALYVDNCAACHRTDGAGYKrAFPSLKGNPVVQTEDATSLIHI 363
Cdd:TIGR00782  74 IKKFNEKNAAKWAKLAQTPLEDIAKDPELKQYARNAGAAIFRTWCAQCHGSGAGGAK-GFPNLLDNDWLWGGTLEGIHTT 152

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1405942288 364 VLTGSTTPAVKDAVSNlTMPSFGWRLDDQQVADVVNFIR 402
Cdd:TIGR00782 153 IKHGIRDPDDGDTYVG-EMPAFGPLLEEADIKDVASYVM 190
CytM COG5676
Cytochrome cM [Energy production and conversion];
320-403 8.20e-05

Cytochrome cM [Energy production and conversion];


Pssm-ID: 444390 [Multi-domain]  Cd Length: 124  Bit Score: 42.24  E-value: 8.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 320 GAALYVDNCAACHRTDGAGykRAFPSLKGnpVVQTEDATSLIHIVLTGSTTPavkdavsnltMPSFgwRLDDQQVADVVN 399
Cdd:COG5676    56 GHAIFQINCAGCHGLQADG--NVGPSLQG--VSKRKSDVSLIEQVISGKTPP----------MPKF--QPSPQEMADLLS 119


                  ....
gi 1405942288 400 FIRT 403
Cdd:COG5676   120 YLET 123
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
8-130 8.54e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.01  E-value: 8.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288   8 ALVLGALSCAAFAEEAPADSNLIKQGEYLARAgDCVACHTNGKTGKPfaGGLPmetpigtiystNITPDKEHGIGGytfE 87
Cdd:COG2010    67 ALLLALLLAAAAADAPAADAEALARGKALYEQ-NCAACHGADGKGGL--GAAP-----------NLTDDALYGGDP---E 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1405942288  88 EFDDAVRKGVRKdgstlyPAMpyPSFA-RISEADMRAMYAYFMH 130
Cdd:COG2010   130 ALVETILNGRPG------GAM--PAFGgQLSDEEIAALAAYLRS 165
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 237-403 1.15e-04

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 43.73  E-value: 1.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 237 DGLGTW--SEAELAEFLKTGRNDKSVVFGGMSDVVEHsLQYLSDDDITAIARYLKSLppLGGKQTPAPVEDSvakdlwkg 314
Cdd:TIGR00782 137 DNDWLWggTLEGIHTTIKHGIRDPDDGDTYVGEMPAF-GPLLEEADIKDVASYVMSL--SSGKPKDEALAAK-------- 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 315 ndsktGAALYVDNCAACHRTDGAGYKRafpslKGNPVVqTEDatslihIVLTGSTTPAVKDAVSN---LTMPSFGWRLDD 391
Cdd:TIGR00782 206 -----GQELFADNCTTCHGEDGKGLQE-----LGAPNL-TDD------VWLYGGDLKTITTTITNgrgGVMPAWGPRLSE 268

                         170
                  ....*....|..
gi 1405942288 392 QQVADVVNFIRT 403
Cdd:TIGR00782 269 AQIKALAAYVHS 280
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
58-293 2.99e-04

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 41.47  E-value: 2.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288  58 GLPMETPIGTIYSTNITPDKEHGIGGYTFEEFDDAVRKGVRKDGSTLYPAMPYPSFARISEADM-RAMYAYFMHGVEPVN 136
Cdd:COG2010     1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALaLALLLALLLAAAAAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 137 AANKDTDipwplsmrwplafwrgifaptpsdfvanpqvdpVLERGRYLVEGlgHCGACHTPRsltmqekalsesegddyL 216
Cdd:COG2010    81 APAADAE---------------------------------ALARGKALYEQ--NCAACHGAD-----------------G 108

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1405942288 217 AGSNAPidgwvASSLRGENRDGLgtwSEAELAEFLKTGRNDksvvfGGMSDVVEHslqyLSDDDITAIARYLKSLPP 293
Cdd:COG2010   109 KGGLGA-----APNLTDDALYGG---DPEALVETILNGRPG-----GAMPAFGGQ----LSDEEIAALAAYLRSLSG 168
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 327-403 7.28e-04

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 38.34  E-value: 7.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 327 NCAACHRTDGAGykrafpSLKGN--PvvqtedatSLIHIVLTGSTTPAVKDAVSNLT-------MPSFGWR--LDDQQVA 395
Cdd:TIGR04485   4 NCLACHQIPGSE------VFPGNigP--------SLTGYGARYPDEAYLRAKIADAKavnpctvMPRFGKNgiLTEQEIE 69


                  ....*...
gi 1405942288 396 DVVNFIRT 403
Cdd:TIGR04485  70 DVVAYLLT 77
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 39-130 1.88e-03

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 37.52  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288  39 AGDCVACHTNGKTGKPFAGGLPmeTPIGTIYSTNITPDKEHGIGGYtfeefddavrKGVRKDGSTLYPAMPYPSFARISE 118
Cdd:pfam00034   8 AANCAACHGVNGEGAGAGGPDL--AGLAARYPGDALGAIRENKHAI----------GGGGVDRAGGPPGTGMPAFDGLTD 75

                          90
                  ....*....|..
gi 1405942288 119 ADMRAMYAYFMH 130
Cdd:pfam00034  76 EEIADLVAYLLS 87
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
23-128 4.66e-03

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 36.63  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288  23 APADSNLIKQGEYLARAgdCVACHtnGKTGKpfaGGLPMETPIgtiystnitpdkehgIGGYTFEEFDDAV---RKGVRK 99
Cdd:COG2863     8 APAAAGDAARGKAYAAA--CAACH--GADGE---GNPGGGAPR---------------LAGQHAEYLVAQLkafRSGARK 65

                          90       100
                  ....*....|....*....|....*....
gi 1405942288 100 DgstlyPAMPyPSFARISEADMRAMYAYF 128
Cdd:COG2863    66 N-----GVMP-AIAKGLSDEDIKALAAYI 88
PRK13697 PRK13697
cytochrome c6; Provisional
 316-401 5.83e-03

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 36.30  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 316 DSKTGAALYVDNCAACHrTDGAGYKRAFPSLKGNPVVQ--TEDATSLIHIVLTGsttpavKDAvsnltMPSFGWRLDDQQ 393
Cdd:PRK13697   27 DAANGEQVFSANCASCH-AGGKNLVNAGKTLKKADLEKygMYSLEAITAQVTNG------KNA-----MPAFKDRLSPDQ 94


                  ....*...
gi 1405942288 394 VADVVNFI 401
Cdd:PRK13697   95 IEDVAAYV 102
petJ CHL00183
cytochrome c553; Provisional
 316-401 6.94e-03

cytochrome c553; Provisional


Pssm-ID: 177085  Cd Length: 108  Bit Score: 36.29  E-value: 6.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 316 DSKTGAALYVDNCAACHrtdgAGykrafpslkGNPVVQTE-----DATSLIHIVLTGSTTPAVKDAVSnlTMPSFGWRLD 390
Cdd:CHL00183   25 DLDNGEQIFSANCAACH----AG---------GNNVIMPEktlkkDALEANSMNSIEAITYQVTNGKN--AMPAFGGRLS 89

                          90
                  ....*....|.
gi 1405942288 391 DQQVADVVNFI 401
Cdd:CHL00183   90 DEDIEDVANYV 100
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
168-293 7.73e-03

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 35.86  E-value: 7.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405942288 168 FVANPQVDPVLERGRYLVEglgHCGACHTPrsltmqekalsesEGDDYLAGSNAPIDGWVASSLrgenrdglgtwsEAEL 247
Cdd:COG2863     5 LLAAPAAAGDAARGKAYAA---ACAACHGA-------------DGEGNPGGGAPRLAGQHAEYL------------VAQL 56

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1405942288 248 AEFLKTGRNDksvvfGGMSDVVEHslqyLSDDDITAIARYLKSLPP 293
Cdd:COG2863    57 KAFRSGARKN-----GVMPAIAKG----LSDEDIKALAAYIASLKA 93
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
320-348 8.09e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 35.63  E-value: 8.09e-03
                          10        20
                  ....*....|....*....|....*....
gi 1405942288 320 GAALYVDNCAACHRTDGAGYKRAFPSLKG 348
Cdd:COG3474     6 GEKLFNRKCAACHSVDGGAGNRVGPNLNG 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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