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Conserved domains on  [gi|1388639981|gb|PWC45667|]
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membrane protein [Klebsiella variicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HOK_GEF super family cl27487
Hok/gef family;
6-46 1.38e-09

Hok/gef family;


The actual alignment was detected with superfamily member pfam01848:

Pssm-ID: 452751  Cd Length: 41  Bit Score: 46.99  E-value: 1.38e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1388639981  6 ALVAIIVLCITVLGFTLLVHSSLCELSIKERNIEFKAVLAY 46
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Name Accession Description Interval E-value
HOK_GEF pfam01848
Hok/gef family;
6-46 1.38e-09

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 46.99  E-value: 1.38e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1388639981  6 ALVAIIVLCITVLGFTLLVHSSLCELSIKERNIEFKAVLAY 46
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
1-50 1.82e-08

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 44.53  E-value: 1.82e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1388639981  1 MLTKYALVAIIVLCITVLGFTLLVHSSLCELSIKERNIEFKAVLAYESKK 50
Cdd:PRK09759   1 MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLACNLKE 50
 
Name Accession Description Interval E-value
HOK_GEF pfam01848
Hok/gef family;
6-46 1.38e-09

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 46.99  E-value: 1.38e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1388639981  6 ALVAIIVLCITVLGFTLLVHSSLCELSIKERNIEFKAVLAY 46
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
1-50 1.82e-08

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 44.53  E-value: 1.82e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1388639981  1 MLTKYALVAIIVLCITVLGFTLLVHSSLCELSIKERNIEFKAVLAYESKK 50
Cdd:PRK09759   1 MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLACNLKE 50
PRK09738 PRK09738
small toxic polypeptide; Provisional
 7-50 1.26e-06

small toxic polypeptide; Provisional


Pssm-ID: 182055  Cd Length: 52  Bit Score: 39.77  E-value: 1.26e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1388639981  7 LVAIIVLCITVLGFTLLVHSSLCELSIKERNIEFKAVLAYESKK 50
Cdd:PRK09738   9 VWCVLIVCLTLLIFTYLTRKSLCELRYRDGDREVAAFMAYESGK 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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