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Conserved domains on  [gi|51338651|sp|P62855|]
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RecName: Full=Small ribosomal subunit protein eS26; AltName: Full=40S ribosomal protein S26

Protein Classification

eS26 family ribosomal protein( domain architecture ID 10472683)

eS26 family ribosomal protein is a component of the small ribosomal subunit.

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_S26e pfam01283
Ribosomal protein S26e;
1-101 4.07e-62

Ribosomal protein S26e;


:

Pssm-ID: 426179  Cd Length: 104  Bit Score: 184.40  E-value: 4.07e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
Cdd:pfam01283   1 MTKKRRNNGRNKKGRGHVKPVRCSNCGRCVPKDKAIKRFTIRNIVEAAAVRDISEASVYDGYALPKLYIKLHYCVSCAIH 80
                          90       100
                  ....*....|....*....|.
gi 51338651    81 SKVVRNRSREARKDRTPPPRF 101
Cdd:pfam01283  81 SRIVRVRSREDRKIRTPPPRF 101
 
Name Accession Description Interval E-value
Ribosomal_S26e pfam01283
Ribosomal protein S26e;
1-101 4.07e-62

Ribosomal protein S26e;


Pssm-ID: 426179  Cd Length: 104  Bit Score: 184.40  E-value: 4.07e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
Cdd:pfam01283   1 MTKKRRNNGRNKKGRGHVKPVRCSNCGRCVPKDKAIKRFTIRNIVEAAAVRDISEASVYDGYALPKLYIKLHYCVSCAIH 80
                          90       100
                  ....*....|....*....|.
gi 51338651    81 SKVVRNRSREARKDRTPPPRF 101
Cdd:pfam01283  81 SRIVRVRSREDRKIRTPPPRF 101
PTZ00172 PTZ00172
40S ribosomal protein S26; Provisional
1-101 3.33e-52

40S ribosomal protein S26; Provisional


Pssm-ID: 185497  Cd Length: 108  Bit Score: 159.51  E-value: 3.33e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
Cdd:PTZ00172   1 MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYYGYPLPKLYMKQQYCVSCAIH 80
                         90       100
                 ....*....|....*....|.
gi 51338651   81 SKVVRNRSREARKDRTPPPRF 101
Cdd:PTZ00172  81 SRVVRVRSREDRKIRTPPKRP 101
RPS26B COG4830
Ribosomal protein S26e [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-98 1.63e-20

Ribosomal protein S26e [Translation, ribosomal structure and biogenesis]; Ribosomal protein S26e is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443858  Cd Length: 94  Bit Score: 78.91  E-value: 1.63e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651   1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASvfdAYVlPKLYVKLHYCVSCAIH 80
Cdd:COG4830   1 MPKKRKNRGRHKGGKGKEGTVQCDNCGRLVPRDKAVCVTRRYSPVDPQLAKELEKKG---AII-PRYPVTKCYCISCAIH 76
                        90
                ....*....|....*...
gi 51338651  81 SKVVRNRSREARKDRTPP 98
Cdd:COG4830  77 LGIVKVRAEEERKPKLPL 94
 
Name Accession Description Interval E-value
Ribosomal_S26e pfam01283
Ribosomal protein S26e;
1-101 4.07e-62

Ribosomal protein S26e;


Pssm-ID: 426179  Cd Length: 104  Bit Score: 184.40  E-value: 4.07e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651     1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
Cdd:pfam01283   1 MTKKRRNNGRNKKGRGHVKPVRCSNCGRCVPKDKAIKRFTIRNIVEAAAVRDISEASVYDGYALPKLYIKLHYCVSCAIH 80
                          90       100
                  ....*....|....*....|.
gi 51338651    81 SKVVRNRSREARKDRTPPPRF 101
Cdd:pfam01283  81 SRIVRVRSREDRKIRTPPPRF 101
PTZ00172 PTZ00172
40S ribosomal protein S26; Provisional
1-101 3.33e-52

40S ribosomal protein S26; Provisional


Pssm-ID: 185497  Cd Length: 108  Bit Score: 159.51  E-value: 3.33e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
Cdd:PTZ00172   1 MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYYGYPLPKLYMKQQYCVSCAIH 80
                         90       100
                 ....*....|....*....|.
gi 51338651   81 SKVVRNRSREARKDRTPPPRF 101
Cdd:PTZ00172  81 SRVVRVRSREDRKIRTPPKRP 101
PLN00186 PLN00186
ribosomal protein S26; Provisional
1-101 2.02e-50

ribosomal protein S26; Provisional


Pssm-ID: 215093  Cd Length: 109  Bit Score: 155.30  E-value: 2.02e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80
Cdd:PLN00186   1 MTKKRRNGGRNKHGRGHVKRIRCSNCGKCVPKDKAIKRFLVRNIVEQAALRDVQEACVYDGYTLPKLYAKVQYCISCAIH 80
                         90       100
                 ....*....|....*....|.
gi 51338651   81 SKVVRNRSREARKDRTPPPRF 101
Cdd:PLN00186  81 SRVVRVRSRENRRIREPPPRF 101
RPS26B COG4830
Ribosomal protein S26e [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-98 1.63e-20

Ribosomal protein S26e [Translation, ribosomal structure and biogenesis]; Ribosomal protein S26e is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443858  Cd Length: 94  Bit Score: 78.91  E-value: 1.63e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651   1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASvfdAYVlPKLYVKLHYCVSCAIH 80
Cdd:COG4830   1 MPKKRKNRGRHKGGKGKEGTVQCDNCGRLVPRDKAVCVTRRYSPVDPQLAKELEKKG---AII-PRYPVTKCYCISCAIH 76
                        90
                ....*....|....*...
gi 51338651  81 SKVVRNRSREARKDRTPP 98
Cdd:COG4830  77 LGIVKVRAEEERKPKLPL 94
PRK09335 PRK09335
30S ribosomal protein S26e; Provisional
1-99 1.86e-18

30S ribosomal protein S26e; Provisional


Pssm-ID: 181785  Cd Length: 95  Bit Score: 73.59  E-value: 1.86e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51338651    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVfdayVLPKLYVKLHYCVSCAIH 80
Cdd:PRK09335   1 MPKKRENRGRRKGDKGHVGYVQCDNCGRRVPRDKAVCVTKMYSPVDPQLAKELEKKGA----IIARYPVTKCYCVNCAVH 76
                         90
                 ....*....|....*....
gi 51338651   81 SKVVRNRSREARKDRTPPP 99
Cdd:PRK09335  77 LGIIKIRPEEERKKKAPLR 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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