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Conserved domains on  [gi|586052|sp|P37725|]
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RecName: Full=Uroporphyrinogen-III C-methyltransferase; Short=Urogen III methylase; AltName: Full=S-adenosyl-L-methionine:uroporphyrinogen III methyltransferase; Short=SUMT; AltName: Full=Uroporphyrinogen III methylase; Short=UROM

Protein Classification

uroporphyrinogen-III C-methyltransferase( domain architecture ID 10012678)

uroporphyrinogen-III C-methyltransferase catalyzes two sequential methylation reactions (on C2 and C7) of uroporphyrinogen-III (UROGEN) to yield precorrin-2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
1-233 4.17e-120

uroporphyrinogen-III C-methyltransferase;


:

Pssm-ID: 235711  Cd Length: 249  Bit Score: 342.19  E-value: 4.17e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      1 MSAKVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEH-CPDARVITVGKRGGCRSTPQDFIHRLMLAMrAKA 79
Cdd:PRK06136   1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYaKPDAELIYVGKRAGRHSTKQEEINRLLVDY-ARK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     80 NAW-CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDS---SLNWR 155
Cdd:PRK06136  80 GKVvVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKlepEVNWS 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 586052    156 ALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVA 233
Cdd:PRK06136 160 ALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIGEVV 237
 
Name Accession Description Interval E-value
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
1-233 4.17e-120

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 342.19  E-value: 4.17e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      1 MSAKVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEH-CPDARVITVGKRGGCRSTPQDFIHRLMLAMrAKA 79
Cdd:PRK06136   1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYaKPDAELIYVGKRAGRHSTKQEEINRLLVDY-ARK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     80 NAW-CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDS---SLNWR 155
Cdd:PRK06136  80 GKVvVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKlepEVNWS 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 586052    156 ALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVA 233
Cdd:PRK06136 160 ALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIGEVV 237
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
4-240 7.02e-104

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 300.84  E-value: 7.02e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHC-PDARVITVGKRGGCRSTPQDFIHRLMLAmRAKANA- 81
Cdd:COG0007   3 KVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALArPDAELIYVGKRGGRHSLPQEEINALLVE-LARAGKr 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    82 -----WCDlraatPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDS-SLNWR 155
Cdd:COG0007  82 vvrlkGGD-----PFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASSVTFVTGHEKDGKlDLDWA 156
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052   156 ALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVAGA 235
Cdd:COG0007 157 ALARPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVAL 236

                ....*
gi 586052   236 GQAAS 240
Cdd:COG0007 237 REKLS 241
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
4-234 1.92e-100

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 291.82  E-value: 1.92e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052       4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHCP-DARVITVGKRGGCRSTPQDFIHRLMLAMRAKANAW 82
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPpQAELIDVGKRPGCHSKKQEEINRLLVELAREGKKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      83 CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDD--SSLNWRALAEG 160
Cdd:TIGR01469  81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDkaLEVDWEALAKG 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 586052     161 GTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVAG 234
Cdd:TIGR01469 161 AGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEVVA 234
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
8-233 5.62e-97

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 282.79  E-value: 5.62e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     8 VGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHC-PDARVITVGKRGGCRSTPQDFIHRLMLAmRAKANA----- 81
Cdd:cd11642   1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALApPGAELIYVGKRPGRHSVPQEEINELLVE-LAREGKrvvrl 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    82 -WCDlraatPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDSSL-NWRALAE 159
Cdd:cd11642  80 kGGD-----PFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASSVTFVTGHEADGKLPdDDAALAR 154
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 586052   160 GGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVA 233
Cdd:cd11642 155 PGGTLVIYMGVSNLEEIAERLIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRSPALIVVGEVV 228
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
4-210 4.85e-38

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 132.08  E-value: 4.85e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052       4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDD-LVNPRVLEHCPDARVITVGKRGGCRSTPQDFIHRLMLAMRAKANAW 82
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVLGDDsRALEILLDLLPEDLYFPMTEDKEPLEEAYEEIAEALAAALRAGKDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      83 CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTaHTQDDSSLNWRALAEGGT 162
Cdd:pfam00590  81 ARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLP-GLARIELRLLEALLANGD 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 586052     163 TLVVYMGVAKLEEIRQQLLEGAmAADTPVAMIENASLPQQRECRSTLA 210
Cdd:pfam00590 160 TVVLLYGPRRLAELAELLLELY-PDTTPVAVVERAGTPDEKVVRGTLG 206
 
Name Accession Description Interval E-value
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
1-233 4.17e-120

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 342.19  E-value: 4.17e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      1 MSAKVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEH-CPDARVITVGKRGGCRSTPQDFIHRLMLAMrAKA 79
Cdd:PRK06136   1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYaKPDAELIYVGKRAGRHSTKQEEINRLLVDY-ARK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     80 NAW-CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDS---SLNWR 155
Cdd:PRK06136  80 GKVvVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKlepEVNWS 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 586052    156 ALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVA 233
Cdd:PRK06136 160 ALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIGEVV 237
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
4-240 7.02e-104

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 300.84  E-value: 7.02e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHC-PDARVITVGKRGGCRSTPQDFIHRLMLAmRAKANA- 81
Cdd:COG0007   3 KVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALArPDAELIYVGKRGGRHSLPQEEINALLVE-LARAGKr 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    82 -----WCDlraatPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDS-SLNWR 155
Cdd:COG0007  82 vvrlkGGD-----PFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASSVTFVTGHEKDGKlDLDWA 156
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052   156 ALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVAGA 235
Cdd:COG0007 157 ALARPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVAL 236

                ....*
gi 586052   236 GQAAS 240
Cdd:COG0007 237 REKLS 241
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
4-234 1.92e-100

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 291.82  E-value: 1.92e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052       4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHCP-DARVITVGKRGGCRSTPQDFIHRLMLAMRAKANAW 82
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPpQAELIDVGKRPGCHSKKQEEINRLLVELAREGKKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      83 CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDD--SSLNWRALAEG 160
Cdd:TIGR01469  81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDkaLEVDWEALAKG 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 586052     161 GTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVAG 234
Cdd:TIGR01469 161 AGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEVVA 234
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
8-233 5.62e-97

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 282.79  E-value: 5.62e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     8 VGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHC-PDARVITVGKRGGCRSTPQDFIHRLMLAmRAKANA----- 81
Cdd:cd11642   1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALApPGAELIYVGKRPGRHSVPQEEINELLVE-LAREGKrvvrl 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    82 -WCDlraatPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDSSL-NWRALAE 159
Cdd:cd11642  80 kGGD-----PFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASSVTFVTGHEADGKLPdDDAALAR 154
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 586052   160 GGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVA 233
Cdd:cd11642 155 PGGTLVIYMGVSNLEEIAERLIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRSPALIVVGEVV 228
PLN02625 PLN02625
uroporphyrin-III C-methyltransferase
1-233 1.30e-71

uroporphyrin-III C-methyltransferase


Pssm-ID: 178232 [Multi-domain]  Cd Length: 263  Bit Score: 219.89  E-value: 1.30e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      1 MSAKVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHC-PDARVITVGKRGGCRSTPQDFIHRLMLAMRAKA 79
Cdd:PLN02625  13 GPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVSPDILDLVpPGAELLYVGKRGGYHSRTQEEIHELLLSFAEAG 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     80 NAWCDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDSS---LNWRA 156
Cdd:PLN02625  93 KTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTdplDVAEA 172
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 586052    157 LAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVA 233
Cdd:PLN02625 173 AADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVIVVGEVV 249
cysG PRK10637
siroheme synthase CysG;
4-234 9.40e-54

siroheme synthase CysG;


Pssm-ID: 182606 [Multi-domain]  Cd Length: 457  Bit Score: 179.57  E-value: 9.40e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHCP-DARVITVGKRGGCRSTPQDFIHRLMLAMRAKANAW 82
Cdd:PRK10637 217 EVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRrDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRV 296
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     83 CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDSSLNWRALAEGGT 162
Cdd:PRK10637 297 VRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQ 376
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 586052    163 TLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFAlkSPAILVIGSVAG 234
Cdd:PRK10637 377 TLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSGTLTQLGELAQQVN--SPSLIIVGRVVG 446
PRK07168 PRK07168
uroporphyrin-III C-methyltransferase;
1-232 1.07e-38

uroporphyrin-III C-methyltransferase;


Pssm-ID: 180864 [Multi-domain]  Cd Length: 474  Bit Score: 140.13  E-value: 1.07e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      1 MSAKVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHC-PDARVITVGKRGGCRSTPQDFIHRLMLAMRAKA 79
Cdd:PRK07168   1 MNGYVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLSYTkQTCELMYCGKMPKNHIMRQEMINAHLLQFAKEG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     80 NAWCDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQD--------DSS 151
Cdd:PRK07168  81 KIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGpltdhgkyNSS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    152 LNwralaegGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGS 231
Cdd:PRK07168 161 HN-------SDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNPSMTIVGD 233

                 .
gi 586052    232 V 232
Cdd:PRK07168 234 V 234
Precorrin-4_C11-MT cd11641
Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates ...
8-230 3.16e-38

Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. In the aerobic pathway, CobM catalyzes the methylation of precorrin-4 at C-11 to yield precorrin-5. In the anaerobic pathway, CibF catalyzes the methylation of cobalt-precorrin-4 to cobalt-precorrin-5. Both CibF and CobM, which are homologous, are included in this model. There are about 30 enzymes involved in vitamin B12 synthetic pathway. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared in both pathways and several of these enzymes are pathway-specific.


Pssm-ID: 381168 [Multi-domain]  Cd Length: 225  Bit Score: 132.90  E-value: 3.16e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     8 VGAGPGDPELLTLKAVRALHAADVVL-IDDLVNPRVLEHC-PDARVITVGkrggcrSTPQDFIHRLMlamRAKANAWCDL 85
Cdd:cd11641   1 VGAGPGDPELITVKGARLLEEADVVIyAGSLVPPELLAYAkPGAEIVDSA------GMTLEEIIEVM---REAAREGKDV 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    86 -RAAT--PCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAH----TQDDSSLnwRALA 158
Cdd:cd11641  72 vRLHTgdPSLYGAIREQIDALDKLGIPYEVVPGVSSFFAAAAALGTELTLPEVSQTVILTRLEgrtpVPEGESL--RELA 149
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 586052   159 EGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIG 230
Cdd:cd11641 150 KHGATLAIFLSAALIEEVVEELLAGGYPPDTPVAVVYKASWPDEKIIRGTLADLAEKVKEAGITRTALILVG 221
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
4-210 4.85e-38

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 132.08  E-value: 4.85e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052       4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDD-LVNPRVLEHCPDARVITVGKRGGCRSTPQDFIHRLMLAMRAKANAW 82
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVLGDDsRALEILLDLLPEDLYFPMTEDKEPLEEAYEEIAEALAAALRAGKDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      83 CDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTaHTQDDSSLNWRALAEGGT 162
Cdd:pfam00590  81 ARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLP-GLARIELRLLEALLANGD 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 586052     163 TLVVYMGVAKLEEIRQQLLEGAmAADTPVAMIENASLPQQRECRSTLA 210
Cdd:pfam00590 160 TVVLLYGPRRLAELAELLLELY-PDTTPVAVVERAGTPDEKVVRGTLG 206
CobM COG2875
Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of ...
1-239 1.34e-37

Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 442122 [Multi-domain]  Cd Length: 256  Bit Score: 132.11  E-value: 1.34e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     1 MSAKVWLVGAGPGDPELLTLKAVRALHAADVVLI-DDLVNPRVLEHC-PDARVI-TVGKrggcrstPQDFIHRLMLAmRA 77
Cdd:COG2875   1 MKGTVYFVGAGPGDPDLITVKGRRLLEEADVVLYaGSLVPPELLAYCkPGAEIVdSASM-------TLEEIIALMKE-AA 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    78 KANawcdLRAA-----TPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTL--VTAHTQDDS 150
Cdd:COG2875  73 AEG----KDVVrlhsgDPSLYGAIAEQMRRLDALGIPYEVVPGVSAFAAAAAALGRELTLPEVSQTVILtrAEGRTPMPE 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052   151 SLNWRALAEGGTTLVVYMGVAKLEEIRQQLLEGAmAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIG 230
Cdd:COG2875 149 GESLASLAAHGATLAIYLSAHRIDEVVEELLEGY-PPDTPVAVVYRASWPDEKIVRGTLADIAEKVKEAGITRTALILVG 227

                ....*....
gi 586052   231 SVAGAGQAA 239
Cdd:COG2875 228 PALGAEDFA 236
cobM_cbiF TIGR01465
precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, ...
5-239 1.07e-32

precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 200107  Cd Length: 247  Bit Score: 119.35  E-value: 1.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052       5 VWLVGAGPGDPELLTLKAVRALHAADVVL-IDDLVNPRVLEHC-PDARVitvgkrggcRSTPQDFIHRLMLAMRAKANAW 82
Cdd:TIGR01465   1 VYFIGAGPGDPDLITVKGRKLIESADVILyAGSLVPPELLAHCrPGAEV---------VNSAGMSLEEIVDIMSDAHREG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      83 CD---LRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAH----TQDDSSLnwR 155
Cdd:TIGR01465  72 KDvarLHSGDPSIYGAIAEQMRLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRASgrtpMPEGEKL--A 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     156 ALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVAGA 235
Cdd:TIGR01465 150 DLAKHGATMAIFLSAHILDKVVKELIEHGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRTTLILVGPALDP 229

                  ....
gi 586052     236 GQAA 239
Cdd:TIGR01465 230 RIGK 233
cbiF PRK15473
cobalt-precorrin-4 methyltransferase;
3-234 1.79e-25

cobalt-precorrin-4 methyltransferase;


Pssm-ID: 185370  Cd Length: 257  Bit Score: 100.60  E-value: 1.79e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      3 AKVWLVGAGPGDPELLTLKAVRALHAADVVL-IDDLVNPRVLEHCP-DARvitvgkrggCRSTPQDFIHRLMLAMRAKAN 80
Cdd:PRK15473   8 RCVWFVGAGPGDKELITLKGYRLLQQAQVVIyAGSLINTELLDYCPaQAE---------CHDSAELHLEQIIDLMEAGVK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     81 AWCD---LRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGV--TLVTAHTQDDSSLNWR 155
Cdd:PRK15473  79 AGKTvvrLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLiiTRMEGRTPVPAREQLE 158
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 586052    156 ALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMHTDAQVFALKSPAILVIGSVAG 234
Cdd:PRK15473 159 SFASHQTSMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTALILVGNFLG 237
TP_methylase cd11724
uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily ...
4-210 4.97e-21

uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily use S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and Ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381178 [Multi-domain]  Cd Length: 243  Bit Score: 88.38  E-value: 4.97e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     4 KVWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHCPDARVITVGK----RGGCRSTPQD---FIHRLMLAMR 76
Cdd:cd11724   1 KLYLVGVGPGDPDLITLRALKAIKKADVVFAPPDLRKRFAEYLAGKEVLDDPHglftYYGKKCSPLEeaeKECEELEKQR 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    77 AKANAWcdLRAAT-------------PCIFGRGgeeaLWLRE--RGVEVELVNGI---TAGLAgATNCDIplTLRGVSRG 138
Cdd:cd11724  81 AEIVQK--IREALaqgknvalldsgdPTIYGPW----IWYLEefADLNPEVIPGVssfNAANA-ALKRSL--TGGGDSRS 151
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 586052   139 VTLVTAHTQDDSSLNWRALAEGGTTLVVYMGVAKLEEIRQQLLEGaMAADTPVAMIENASLP-QQRECRSTLA 210
Cdd:cd11724 152 VILTAPFALKENEDLLEDLAATGDTLVIFMMRLDLDELVEKLKKH-YPPDTPVAIVYHAGYSeKEKVIRGTLD 223
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
1-203 1.68e-19

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 83.99  E-value: 1.68e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     1 MSAKVWLVGAGPGDPELLTLKAVRALHAADVVLIddlvnPR------------VLEHCPDARVITVG-KRGGCRSTPQDF 67
Cdd:COG2243   1 MMGKLYGVGVGPGDPELLTLKAVRALREADVIAY-----PAkgagkaslareiVAPYLPPARIVELVfPMTTDYEALVAA 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    68 IHRLMLAMRAKANAwcDLRAATPCI--------FGRggeeaLW--LRERGVEVELVNGITAGLAGATNCDIPLTLRGvsR 137
Cdd:COG2243  76 WDEAAARIAEELEA--GRDVAFLTEgdpslystFMY-----LLerLRERGFEVEVIPGITSFSAAAAALGIPLAEGD--E 146
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 586052   138 GVTLVTAhTQDDSSlnWRALAEGGTTLVVYMGVAKLEEIRQQLLEGAMAADtpVAMIENASLPQQR 203
Cdd:COG2243 147 PLTVLPG-TLLEEE--LERALDDFDTVVIMKVGRNFPKVREALEEAGLLDR--AWYVERAGMPDER 207
TP_methylase cd09815
S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet ...
8-230 1.17e-17

S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381167 [Multi-domain]  Cd Length: 219  Bit Score: 78.59  E-value: 1.17e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     8 VGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRvlehcpDARVITVGKRGGCR------STPQDFIHRLMLAMRAKANA 81
Cdd:cd09815   1 VGVGPGDPDLLTLRALEILRAADVVVAEDKDSKL------LSLVLRAILKDGKRiydlhdPNVEEEMAELLLEEARQGKD 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    82 WCDLRAATPCIFGRGGEEALWLRERGVEVELVNGITAGLAGATNCDIPLTlrgvsRGVTLVTAHTQ--DDSSLNWRALAE 159
Cdd:cd09815  75 VAFLSPGDPGVAGTGAELVERAEREGVEVKVIPGVSAADAAAAALGIDLG-----ESFLFVTASDLleNPRLLVLKALAK 149
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 586052   160 GGTTLVVYMGVAKLEEIRQQLLEGAMAADTPVAMIENASLPQQrECRSTLAHMHTDAQVFALKSPAILVIG 230
Cdd:cd09815 150 ERRHLVLFLDGHRFLKALERLLKELGEDDTPVVLVANAGSEGE-VIRTGTVKELRAERTERGKPLTTILVG 219
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
8-203 3.90e-16

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 74.47  E-value: 3.90e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     8 VGAGPGDPELLTLKAVRALHAADVVLIddlvnPRVLEHCPDARVITVGKRGGCRSTpqdfIHRLMLAM---RAKANAWCD 84
Cdd:cd11645   1 VGVGPGDPELLTLKAVRILKEADVIFV-----PVSKGGEGSAALIIAAALLIPDKE----IIPLEFPMtkdREELEEAWD 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    85 LRAATPCIFGRGGEEA----------------LW--LRERGVEVELVNGITAGLAGATNCDIPLTLRGvsRGVTLVTAhT 146
Cdd:cd11645  72 EAAEEIAEELKEGKDVafltlgdpslystfsyLLerLRAPGVEVEIIPGITSFSAAAARLGIPLAEGD--ESLAILPA-T 148
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 586052   147 QDDSSLNwRALAEGGTtlVVYMGVAK-LEEIRQQLLEGAMAADtpVAMIENASLPQQR 203
Cdd:cd11645 149 YDEEELE-KALENFDT--VVLMKVGRnLEEIKELLEELGLLDK--AVYVERCGMEGER 201
PRK05576 PRK05576
cobalt-factor II C(20)-methyltransferase;
2-203 3.63e-10

cobalt-factor II C(20)-methyltransferase;


Pssm-ID: 235512 [Multi-domain]  Cd Length: 229  Bit Score: 58.00  E-value: 3.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      2 SAKVWLVGAGPGDPELLTLKAVRALHAADVV-----------LIDDLVNPRVLEHcpdARVITVgkrggcrstpqDF--- 67
Cdd:PRK05576   1 MGKLYGIGLGPGDPELLTVKAARILEEADVVyapasrkgggsLALNIVRPYLKEE---TEIVEL-----------HFpms 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     68 --IHRLMLAMRAKANAWC-DLRAATPCIFGRGGEEALW---------LRERGVEVELVNGITAGLAGATNCDIPLTL--- 132
Cdd:PRK05576  67 kdEEEKEAVWKENAEEIAaEAEEGKNVAFITLGDPNLYstfshlleyLKCHDIEVETVPGISSFTAIASRAGVPLAMgde 146
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 586052    133 ----RGVSRGVTLVTAHTQDDSslnwralaeggttlVVYMGVAKLEEIRQQLLEgamAADTPVAMIENASLPQQR 203
Cdd:PRK05576 147 slaiIPATREALIEQALTDFDS--------------VVLMKVYKNFALIEELLE---EGYLDALYVRRAYMEGEQ 204
Precorrin_3B_C17_MT cd11646
Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17) ...
5-212 4.51e-10

Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.


Pssm-ID: 381173 [Multi-domain]  Cd Length: 238  Bit Score: 57.81  E-value: 4.51e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     5 VWLVGAGPGDPELLTLKAVRALHAADVV--------LIDDLVnprvlehcPDARVITVGKRGG---CRstpqdfiHRLML 73
Cdd:cd11646   1 LYVVGIGPGSADLMTPRAREALEEADVIvgyktyldLIEDLL--------PGKEVISSGMGEEverAR-------EALEL 65
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    74 AMRAKanawcdlRAAT-----PCIFGRGGE--EALWLRERGVEVELVNGITAGLAGATNCDIPLTlrgvsrgvtlvtaht 146
Cdd:cd11646  66 ALEGK-------RVALvssgdPGIYGMAGLvlELLDERWDDIEVEVVPGITAALAAAALLGAPLG--------------- 123
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052   147 qDDS---SLN-----W-------RALAEGGTTLVVYMGVAK-----LEEIRQQLLEgAMAADTPVAMIENASLPQQRECR 206
Cdd:cd11646 124 -HDFaviSLSdlltpWeviekrlRAAAEADFVIALYNPRSKkrpwqLEKALEILLE-HRPPDTPVGIVRNAGREGEEVTI 201

                ....*.
gi 586052   207 STLAHM 212
Cdd:cd11646 202 TTLGEL 207
PRK05765 PRK05765
precorrin-3B C17-methyltransferase; Provisional
4-197 1.33e-08

precorrin-3B C17-methyltransferase; Provisional


Pssm-ID: 235597  Cd Length: 246  Bit Score: 54.02  E-value: 1.33e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      4 KVWLVGAGPGDPELLTLKAVRALHAADVV--------LIDDLVNPRvlehcpdaRVITVgkrggcRSTPQDFIHRLMLAM 75
Cdd:PRK05765   3 KLYIVGIGPGSKEQRTIKAQEAIEKSNVIigyntylrLISDLLDGK--------EVIGA------RMKEEIFRANTAIEK 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     76 RAKANAWCDLRAATPCIFGRGGE--EALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSrgVTLVTAHTQDDSSLN 153
Cdd:PRK05765  69 ALEGNIVALVSSGDPQVYGMAGLvfELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVV--ISLSDLLIPREEILH 146
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 586052    154 W-RALAEGGTTLVVYmgvaklEEIRQQLLEGAMAA-------DTPVAMIENA 197
Cdd:PRK05765 147 RvTKAAEADFVIVFY------NPINENLLIEVMDIvskhrkpNTPVGLVKSA 192
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
8-32 1.88e-08

precorrin-2 C(20)-methyltransferase; Reviewed


Pssm-ID: 180341  Cd Length: 241  Bit Score: 53.45  E-value: 1.88e-08
                         10        20
                 ....*....|....*....|....*
gi 586052      8 VGAGPGDPELLTLKAVRALHAADVV 32
Cdd:PRK05990   8 LGVGPGDPELLTLKALRLLQAAPVV 32
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
4-209 7.84e-08

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 51.02  E-value: 7.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      4 KVWLVGAGPGDPELLTLKAVRALHAADVVliddLVNPRVLEHCPD-----ARVITVGKRggcrstpqDFIHRLMLAmRAK 78
Cdd:PRK05787   1 MIYIVGIGPGDPEYLTLKALEAIRKADVV----VGSKRVLELFPElidgeAFVLTAGLR--------DLLEWLELA-AKG 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     79 ANAwCDLRAATPCIFGRGgeeaLWLRER---GVEVELVNGITAGLAGATNCDIPLTlrgvsrGVTLVTAHTQDDSSLNWR 155
Cdd:PRK05787  68 KNV-VVLSTGDPLFSGLG----KLLKVRravAEDVEVIPGISSVQYAAARLGIDMN------DVVFTTSHGRGPNFEELE 136
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 586052    156 ALAEGGTTLVV----YMGVaklEEIRQQLLEGAMaADTPVAMIENASLPQQRECRSTL 209
Cdd:PRK05787 137 DLLKNGRKVIMlpdpRFGP---KEIAAELLERGK-LERRIVVGENLSYPDERIHKLTL 190
cobI_cbiL TIGR01467
precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, ...
8-207 8.59e-08

precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273642 [Multi-domain]  Cd Length: 230  Bit Score: 51.16  E-value: 8.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052       8 VGAGPGDPELLTLKAVRALHAADVVLI------DDLVNPRVLEHcpdarvitVGKRGGCRSTPQDF-----IHRLMLAMR 76
Cdd:TIGR01467   6 VGVGPGDPELITVKALEALRSADVIAVpaskkgRESLARKIVED--------YLKPNDTRILELVFpmtkdRDELEKAWD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      77 AKANA-WCDLRAATPCIFGRGGEEALW---------LRERGVEVELVNGITAGLAGATNCDIPLTlrgVSRGVTLVTAHT 146
Cdd:TIGR01467  78 EAAEAvAAELEEGRDVAFLTLGDPSLYstfsyllqrLQGMGIEVEVVPGITSFAACASAAGLPLV---EGDESLAILPAT 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 586052     147 QDDSSLNwRALAEGGTtlVVYMGVAK-LEEIRQQL-----LEGAmaadtpvAMIENASLPQQRECRS 207
Cdd:TIGR01467 155 AGEAELE-KALAEFDT--VVLMKVGRnLPQIKEALaklgrLDAA-------VVVERATMPDEKIVDL 211
Precorrin-6A-synthase cd11643
Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway ...
7-54 5.27e-06

Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model represents CobF, the precorrin-6A synthase, an enzyme specific to the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, CobF catalyzes the removal of the extruded acyl group in the subsequent step, and the addition of a methyl group at C-1. The product of this reaction is precorrin-6A, which gets reduced by an NADH-dependent reductase to yield precorrin-6B. This family includes enzymes in GC-rich Gram-positive bacteria, alpha proteobacteria and Pseudomonas-related species.


Pssm-ID: 381170  Cd Length: 244  Bit Score: 46.34  E-value: 5.27e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     7 LVGAGPGDPELLTLKAVRALHAADVVLI-------DDLVNPR--VLEHC---PDARVITV 54
Cdd:cd11643   1 LIGIGPGDPDHLTLQAIEALNRVDVFFVldkgeekSDLAALRreICERHlgdRPYRVVEF 60
Precorrin-6Y-MT cd11644
Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also ...
8-229 5.80e-06

Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.


Pssm-ID: 381171 [Multi-domain]  Cd Length: 198  Bit Score: 45.56  E-value: 5.80e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052     8 VGAGPGDPELLTLKAVRALHAADVVliddLVNPRVLEHCPD--ARVITVGKRGgcrstpqdfIHRLMLAMRAKAN----- 80
Cdd:cd11644   1 IGIGPGGPEYLTPEAREAIEEADVV----IGAKRLLELFPDlgAEKIPLPSED---------IAELLEEIAEAGKrvvvl 67
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052    81 AWCDlraatPCIFGRGGeealWLRER--GVEVELVNGIT-----AGLAGatncdIPLTlrgvsrGVTLVTAHTQDDSSLn 153
Cdd:cd11644  68 ASGD-----PGFYGIGK----TLLRRlgGEEVEVIPGISsvqlaAARLG-----LPWE------DARLVSLHGRDLENL- 126
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 586052   154 WRALAEGGTTLVVYMGVAKLEEIRQQLLEgAMAADTPVAMIENASLPQQRECRSTLAhmhtDAQVFALKSPAILVI 229
Cdd:cd11644 127 RRALRRGRKVFVLTDGKNTPAEIARLLLE-RGLGDSRVTVGENLGYPDERITEGTAE----ELAEEEFSDLNVVLI 197
cobJ_cbiH TIGR01466
precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, ...
5-233 8.16e-06

precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273641 [Multi-domain]  Cd Length: 239  Bit Score: 45.75  E-value: 8.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052       5 VWLVGAGPGDPELLTLKAVRALHAADVVLIDDLVNPRVLEHCPDARVITVGKRGGcrstpqdfIHRLMLAM-RAKA-NAW 82
Cdd:TIGR01466   1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKTYLDLIEDLIPGKEVVTSGMREE--------IARAELAIeLAAEgRTV 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586052      83 CDLRAATPCIFGRGGE--EALWLRERGVEVELVNGITAGLAGATNCDIPLTLRGVSRGVT-LVTAHTQDDSSLnwRALAE 159
Cdd:TIGR01466  73 ALVSSGDPGIYGMAALvfEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVISLSdLLTPWPEIEKRL--RAAAE 150
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 586052     160 GGTTLVVY--MGVAKLEEIR--QQLLEGAMAADTPVAMIENASLPQQRECRSTLAHMhtDAQVFALKSpaILVIGSVA 233
Cdd:TIGR01466 151 ADFVIAIYnpRSKRRPEQFRraMEILLEHRKPDTPVGIVRNAGREGEEVEITTLAEL--DEELIDMLT--TVIIGNSE 224
PRK05948 PRK05948
precorrin-2 C(20)-methyltransferase;
6-32 1.17e-04

precorrin-2 C(20)-methyltransferase;


Pssm-ID: 180320  Cd Length: 238  Bit Score: 42.32  E-value: 1.17e-04
                         10        20
                 ....*....|....*....|....*..
gi 586052      6 WLVGAGPGDPELLTLKAVRALHAADVV 32
Cdd:PRK05948   7 YGISVGPGDPELITLKGLRLLQSAPVV 33
YabN_N_like cd11723
N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and ...
8-32 6.33e-04

N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and similar domains; This family includes the S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent tetrapyrrole methylase (TP-methylase) domain of Bacillus subtilis YabN, and similar domains. YabN is a fusion of an N-terminal TP-methylase and a C-terminal MazG-type nucleotide pyrophosphohydrolase domain. MazG-like NTP-PPases have been implicated in house-cleaning functions such as degrading abnormal (d)NTPs. TP-methylases use S-AdoMet in the methylation of diverse substrates. Most TP-methylase family members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis, other members like diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) act on other substrates. The specific function of YabN's TP-methylase domain is not known.


Pssm-ID: 381177  Cd Length: 218  Bit Score: 39.78  E-value: 6.33e-04
                        10        20
                ....*....|....*....|....*
gi 586052     8 VGAGPGDPELLTLKAVRALHAADVV 32
Cdd:cd11723   4 VGLGPGDPDLLTLGALEALKSADKV 28
DHP5_DphB cd11647
diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester ...
6-35 5.22e-03

diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester synthase (DHP5) and archaeal diphthamide synthase (DphB) participate in the second step of the biosynthetic pathway of diphthamide. The eukaryotic enzyme catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester; the archaeal enzyme, catalyzes only 3 methylations, producing diphthine. Diphtheria toxin ADP-ribosylates diphthamide leading to inhibition of protein synthesis in the eukaryotic host cells.


Pssm-ID: 381174  Cd Length: 241  Bit Score: 37.01  E-value: 5.22e-03
                        10        20        30
                ....*....|....*....|....*....|
gi 586052     6 WLVGAGPGDPELLTLKAVRALHAADVVLID 35
Cdd:cd11647   3 YLIGLGLGDEKDITLEGLEALKKADKVYLE 32
CobL COG2241
Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part ...
4-32 5.28e-03

Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441842 [Multi-domain]  Cd Length: 207  Bit Score: 37.05  E-value: 5.28e-03
                        10        20
                ....*....|....*....|....*....
gi 586052     4 KVWLVGAGPGDPELLTLKAVRALHAADVV 32
Cdd:COG2241   3 WLTVVGIGPGGPDGLTPAAREAIAEADVV 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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