RecName: Full=Small ribosomal subunit protein uS4c; AltName: Full=30S ribosomal protein S4, chloroplastic
30S ribosomal protein S4( domain architecture ID 11414071)
30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
rps4 | CHL00113 | ribosomal protein S4; Reviewed |
1-196 | 3.90e-130 | ||||
ribosomal protein S4; Reviewed : Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 363.38 E-value: 3.90e-130
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Name | Accession | Description | Interval | E-value | ||||
rps4 | CHL00113 | ribosomal protein S4; Reviewed |
1-196 | 3.90e-130 | ||||
ribosomal protein S4; Reviewed Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 363.38 E-value: 3.90e-130
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RpsD | COG0522 | Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-196 | 8.32e-72 | ||||
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 216.09 E-value: 8.32e-72
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rpsD_bact | TIGR01017 | ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ... |
3-196 | 4.65e-66 | ||||
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 200066 [Multi-domain] Cd Length: 200 Bit Score: 201.38 E-value: 4.65e-66
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S4 | cd00165 | S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
89-148 | 1.10e-17 | ||||
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes. Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 73.44 E-value: 1.10e-17
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S4 | pfam01479 | S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ... |
89-136 | 1.64e-15 | ||||
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA. Pssm-ID: 396182 [Multi-domain] Cd Length: 48 Bit Score: 67.13 E-value: 1.64e-15
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S4 | smart00363 | S4 RNA-binding domain; |
89-144 | 9.22e-14 | ||||
S4 RNA-binding domain; Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 63.00 E-value: 9.22e-14
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Name | Accession | Description | Interval | E-value | ||||
rps4 | CHL00113 | ribosomal protein S4; Reviewed |
1-196 | 3.90e-130 | ||||
ribosomal protein S4; Reviewed Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 363.38 E-value: 3.90e-130
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rpsD | PRK05327 | 30S ribosomal protein S4; Validated |
1-196 | 6.69e-78 | ||||
30S ribosomal protein S4; Validated Pssm-ID: 235411 [Multi-domain] Cd Length: 203 Bit Score: 231.53 E-value: 6.69e-78
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RpsD | COG0522 | Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-196 | 8.32e-72 | ||||
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 216.09 E-value: 8.32e-72
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rpsD_bact | TIGR01017 | ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ... |
3-196 | 4.65e-66 | ||||
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 200066 [Multi-domain] Cd Length: 200 Bit Score: 201.38 E-value: 4.65e-66
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S4 | cd00165 | S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
89-148 | 1.10e-17 | ||||
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes. Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 73.44 E-value: 1.10e-17
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S4 | pfam01479 | S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ... |
89-136 | 1.64e-15 | ||||
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA. Pssm-ID: 396182 [Multi-domain] Cd Length: 48 Bit Score: 67.13 E-value: 1.64e-15
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S4 | smart00363 | S4 RNA-binding domain; |
89-144 | 9.22e-14 | ||||
S4 RNA-binding domain; Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 63.00 E-value: 9.22e-14
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Ribosomal_S4 | pfam00163 | Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ... |
3-88 | 1.19e-13 | ||||
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices. Pssm-ID: 459696 Cd Length: 96 Bit Score: 63.72 E-value: 1.19e-13
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rps4p | PRK04051 | 30S ribosomal protein S4P; Validated |
85-128 | 4.13e-11 | ||||
30S ribosomal protein S4P; Validated Pssm-ID: 179730 [Multi-domain] Cd Length: 177 Bit Score: 59.11 E-value: 4.13e-11
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uS4_arch | TIGR01018 | ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ... |
87-128 | 1.77e-10 | ||||
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 273397 [Multi-domain] Cd Length: 162 Bit Score: 57.05 E-value: 1.77e-10
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PLN00189 | PLN00189 | 40S ribosomal protein S9; Provisional |
85-128 | 3.81e-09 | ||||
40S ribosomal protein S9; Provisional Pssm-ID: 177783 [Multi-domain] Cd Length: 194 Bit Score: 53.99 E-value: 3.81e-09
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PTZ00155 | PTZ00155 | 40S ribosomal protein S9; Provisional |
86-128 | 7.78e-08 | ||||
40S ribosomal protein S9; Provisional Pssm-ID: 185484 [Multi-domain] Cd Length: 181 Bit Score: 50.08 E-value: 7.78e-08
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Blast search parameters | ||||
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