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Conserved domains on  [gi|1160012473|gb|OPL09662|]
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hypothetical protein AVO33_06535 [delta proteobacterium ML8_F1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SLH pfam00395
S-layer homology domain;
27-67 3.14e-09

S-layer homology domain;


:

Pssm-ID: 459798 [Multi-domain]  Cd Length: 42  Bit Score: 52.59  E-value: 3.14e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1160012473  27 FNDISQN-PYQEAIEEVASLGILKGYGDGSFGPSDTLSRAQA 67
Cdd:pfam00395   1 FKDVKSVaAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 241-303 7.06e-08

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


:

Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 49.09  E-value: 7.06e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1160012473 241 AGGGEQAAVIVTVR-EDGLPVEGAPVYFAAEAGgsdrtsQLSQSQTQTDSQGQATITYT-TLAGD 303
Cdd:pfam02369   1 ADGVDTNTVTATVTdANGNPVPGATVTFSASGG------TLSASSGTTDANGQATVTLTsTKAGT 59
 
Name Accession Description Interval E-value
SLH pfam00395
S-layer homology domain;
27-67 3.14e-09

S-layer homology domain;


Pssm-ID: 459798 [Multi-domain]  Cd Length: 42  Bit Score: 52.59  E-value: 3.14e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1160012473  27 FNDISQN-PYQEAIEEVASLGILKGYGDGSFGPSDTLSRAQA 67
Cdd:pfam00395   1 FKDVKSVaAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 241-303 7.06e-08

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 49.09  E-value: 7.06e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1160012473 241 AGGGEQAAVIVTVR-EDGLPVEGAPVYFAAEAGgsdrtsQLSQSQTQTDSQGQATITYT-TLAGD 303
Cdd:pfam02369   1 ADGVDTNTVTATVTdANGNPVPGATVTFSASGG------TLSASSGTTDANGQATVTLTsTKAGT 59
BID_1 smart00634
Bacterial Ig-like domain (group 1);
229-302 1.88e-07

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 48.86  E-value: 1.88e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160012473  229 VIDIEGTPGLLKAGGGEQAAVIVTVR-EDGLPVEGAPVYFAAEAGGsdrTSQLSQSQTQTDSQGQATITYT-TLAG 302
Cdd:smart00634   2 VTTLTADKDTAVANGSDAITLTATVTdANGNPVAGQEVTFTTPSGG---ALTLSKGTATTDANGIATVTLTsTTAG 74
YfaS COG2373
Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function ...
 202-327 3.79e-03

Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only];


Pssm-ID: 441940 [Multi-domain]  Cd Length: 1605  Bit Score: 40.06  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160012473  202 EFLKDRIDFEdsgGDETQEPVSEPDGLVIDIE-----GTPGllkAGGgeQAAVIVTVREDGLPVEGAPVYFAAEAGGSDR 276
Cdd:COG2373    466 EFKPPRFKVD---LTLDKEPLKPGDPVTVTVDarylfGAPA---AGL--KVEGEVTLRPARTAFPGYPGYRFGDPDEEFE 537

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1160012473  277 TSQLSQSQTQTDSQGQATITYTT-LAGDDERHVEIGCTVFVSEES---ISKSTTI 327
Cdd:COG2373    538 PEELDLGEGTLDADGKASLSLPLpDAPDAPGPLRATVEASVFESGgrpVTRSATV 592
 
Name Accession Description Interval E-value
SLH pfam00395
S-layer homology domain;
27-67 3.14e-09

S-layer homology domain;


Pssm-ID: 459798 [Multi-domain]  Cd Length: 42  Bit Score: 52.59  E-value: 3.14e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1160012473  27 FNDISQN-PYQEAIEEVASLGILKGYGDGSFGPSDTLSRAQA 67
Cdd:pfam00395   1 FKDVKSVaAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 241-303 7.06e-08

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 49.09  E-value: 7.06e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1160012473 241 AGGGEQAAVIVTVR-EDGLPVEGAPVYFAAEAGgsdrtsQLSQSQTQTDSQGQATITYT-TLAGD 303
Cdd:pfam02369   1 ADGVDTNTVTATVTdANGNPVPGATVTFSASGG------TLSASSGTTDANGQATVTLTsTKAGT 59
BID_1 smart00634
Bacterial Ig-like domain (group 1);
229-302 1.88e-07

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 48.86  E-value: 1.88e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160012473  229 VIDIEGTPGLLKAGGGEQAAVIVTVR-EDGLPVEGAPVYFAAEAGGsdrTSQLSQSQTQTDSQGQATITYT-TLAG 302
Cdd:smart00634   2 VTTLTADKDTAVANGSDAITLTATVTdANGNPVAGQEVTFTTPSGG---ALTLSKGTATTDANGIATVTLTsTTAG 74
YfaS COG2373
Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function ...
 202-327 3.79e-03

Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only];


Pssm-ID: 441940 [Multi-domain]  Cd Length: 1605  Bit Score: 40.06  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160012473  202 EFLKDRIDFEdsgGDETQEPVSEPDGLVIDIE-----GTPGllkAGGgeQAAVIVTVREDGLPVEGAPVYFAAEAGGSDR 276
Cdd:COG2373    466 EFKPPRFKVD---LTLDKEPLKPGDPVTVTVDarylfGAPA---AGL--KVEGEVTLRPARTAFPGYPGYRFGDPDEEFE 537

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1160012473  277 TSQLSQSQTQTDSQGQATITYTT-LAGDDERHVEIGCTVFVSEES---ISKSTTI 327
Cdd:COG2373    538 PEELDLGEGTLDADGKASLSLPLpDAPDAPGPLRATVEASVFESGgrpVTRSATV 592
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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