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Conserved domains on  [gi|1144266728|gb|ONT21689|]
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ethyl tert-butyl ether degradation protein EthD [Burkholderia cenocepacia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EthD super family cl21542
EthD domain; This family consists of several bacterial sequences which are related to the EthD ...
 2-104 1.24e-27

EthD domain; This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought to be involved in the degradation of ethyl tert-butyl ether (ETBE). EthD synthesis is induced by ETBE but it's exact function is unknown, it is however thought to be essential to the ETBE degradation system.


The actual alignment was detected with superfamily member TIGR02118:

Pssm-ID: 451301  Cd Length: 100  Bit Score: 96.69  E-value: 1.24e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1144266728   2 IKVSVMYPYTA-GARFDHaYYRETHMPMVKQRLGaaCLYYTVDKGIaGGAPGADPVYvAKCDFVCTSVEAFQAARD-PHA 79
Cdd:TIGR02118   1 IKVSVLYEQPEdGAAFDH-HYRDTHVPLAQKLPG--LRRYAVDKIV-SGLPGSSPYY-GMCELYFDSIEDFQAAFDsPEG 75

                          90       100
                  ....*....|....*....|....*
gi 1144266728  80 QEIMADIANYTDIQPVLQISEVVVE 104
Cdd:TIGR02118  76 KAAAADVANFADGAPTMQISEEVDL 100
 
Name Accession Description Interval E-value
TIGR02118 TIGR02118
conserved hypothetical protein; This model represents a small family of proteins of unknown ...
 2-104 1.24e-27

conserved hypothetical protein; This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved]


Pssm-ID: 131173  Cd Length: 100  Bit Score: 96.69  E-value: 1.24e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1144266728   2 IKVSVMYPYTA-GARFDHaYYRETHMPMVKQRLGaaCLYYTVDKGIaGGAPGADPVYvAKCDFVCTSVEAFQAARD-PHA 79
Cdd:TIGR02118   1 IKVSVLYEQPEdGAAFDH-HYRDTHVPLAQKLPG--LRRYAVDKIV-SGLPGSSPYY-GMCELYFDSIEDFQAAFDsPEG 75

                          90       100
                  ....*....|....*....|....*
gi 1144266728  80 QEIMADIANYTDIQPVLQISEVVVE 104
Cdd:TIGR02118  76 KAAAADVANFADGAPTMQISEEVDL 100
EthD pfam07110
EthD domain; This family consists of several bacterial sequences which are related to the EthD ...
 18-91 4.89e-05

EthD domain; This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought to be involved in the degradation of ethyl tert-butyl ether (ETBE). EthD synthesis is induced by ETBE but it's exact function is unknown, it is however thought to be essential to the ETBE degradation system.


Pssm-ID: 429298  Cd Length: 96  Bit Score: 38.98  E-value: 4.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1144266728  18 HAYYRETHMPMVKQRLG--AACLYYTVDKGIAGGAPGADPVY---VAKCDFVCT----SVEAFQAAR-DPHAQE-IMADI 86
Cdd:pfam07110  10 RDYWEEVHAPLAKPLLGkhGILRYHPQTKRRPGVEAGLALAGpggDPDYDGVAElwfdDLEDFVAAFaDPEYAAvIGPDE 89


                  ....*
gi 1144266728  87 ANYTD 91
Cdd:pfam07110  90 ANFAD 94
 
Name Accession Description Interval E-value
TIGR02118 TIGR02118
conserved hypothetical protein; This model represents a small family of proteins of unknown ...
 2-104 1.24e-27

conserved hypothetical protein; This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved]


Pssm-ID: 131173  Cd Length: 100  Bit Score: 96.69  E-value: 1.24e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1144266728   2 IKVSVMYPYTA-GARFDHaYYRETHMPMVKQRLGaaCLYYTVDKGIaGGAPGADPVYvAKCDFVCTSVEAFQAARD-PHA 79
Cdd:TIGR02118   1 IKVSVLYEQPEdGAAFDH-HYRDTHVPLAQKLPG--LRRYAVDKIV-SGLPGSSPYY-GMCELYFDSIEDFQAAFDsPEG 75

                          90       100
                  ....*....|....*....|....*
gi 1144266728  80 QEIMADIANYTDIQPVLQISEVVVE 104
Cdd:TIGR02118  76 KAAAADVANFADGAPTMQISEEVDL 100
EthD pfam07110
EthD domain; This family consists of several bacterial sequences which are related to the EthD ...
 18-91 4.89e-05

EthD domain; This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought to be involved in the degradation of ethyl tert-butyl ether (ETBE). EthD synthesis is induced by ETBE but it's exact function is unknown, it is however thought to be essential to the ETBE degradation system.


Pssm-ID: 429298  Cd Length: 96  Bit Score: 38.98  E-value: 4.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1144266728  18 HAYYRETHMPMVKQRLG--AACLYYTVDKGIAGGAPGADPVY---VAKCDFVCT----SVEAFQAAR-DPHAQE-IMADI 86
Cdd:pfam07110  10 RDYWEEVHAPLAKPLLGkhGILRYHPQTKRRPGVEAGLALAGpggDPDYDGVAElwfdDLEDFVAAFaDPEYAAvIGPDE 89


                  ....*
gi 1144266728  87 ANYTD 91
Cdd:pfam07110  90 ANFAD 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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