|
Name |
Accession |
Description |
Interval |
E-value |
| RmuC |
COG1322 |
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ... |
107-450 |
3.46e-140 |
|
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];
Pssm-ID: 440933 Cd Length: 342 Bit Score: 405.32 E-value: 3.46e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 107 ARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGE 186
Cdd:COG1322 3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 187 EATNLTRALKGQKTQGNWGELVLERVLEHAGLEKGREYETQVSLKGAEGERFQPDVLIRLPGDKQVVVDAKVSLTAYQQY 266
Cdd:COG1322 83 EVGNLTRALKNKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYERL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 267 IAADDDLLRQQALKQHVTSLRNHVKGLSGKDYRRLEGLHSLDFVLLFMPIEAAFSTALQAEPNLFQDAFAQNIVIVSPTT 346
Cdd:COG1322 163 VEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPTT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 347 LLATLRVIDSLWRQERQNQNAREIAERAGSLYDKFVLFVQDLDEVGSRLQQLDKAYAAARNKLTegrGNLISRSEQLKLL 426
Cdd:COG1322 243 LMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEEL 319
|
330 340
....*....|....*....|....
gi 1143318481 427 GARASKSLPtDWLDRALVAPVEEA 450
Cdd:COG1322 320 GAEEKKELP-ELLEEAREEAEDEE 342
|
|
| RmuC |
pfam02646 |
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ... |
136-428 |
1.12e-129 |
|
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Pssm-ID: 460637 Cd Length: 286 Bit Score: 376.07 E-value: 1.12e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 136 QRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKTQGNWGELVLERVLEH 215
Cdd:pfam02646 1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALKNPKTRGNWGEVQLERILEQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 216 AGLEKGREYETQVSLKGAEGeRFQPDVLIRLPGDKQVVVDAKVSLTAYQQYIAADDDLLRQQALKQHVTSLRNHVKGLSG 295
Cdd:pfam02646 81 SGLREGCDYETQVSLTDEEG-RLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLSS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 296 KDYRRLEglhSLDFVLLFMPIEAAFSTALQAEPNLFQDAFAQNIVIVSPTTLLATLRVIDSLWRQERQNQNAREIAERAG 375
Cdd:pfam02646 160 KDYWDLP---SPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELAG 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1143318481 376 SLYDKFVLFVQDLDEVGSRLQQLDKAYAAARNKLTegrGNLISRSEQLKLLGA 428
Cdd:pfam02646 237 ELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLE---GNLLRRARKLEELGV 286
|
|
| PRK10361 |
PRK10361 |
DNA recombination protein RmuC; Provisional |
31-442 |
1.62e-115 |
|
DNA recombination protein RmuC; Provisional
Pssm-ID: 182409 [Multi-domain] Cd Length: 475 Bit Score: 347.36 E-value: 1.62e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 31 GERHARLSGEVAALRRE--AELMGEERQRASqaEARWASERQGREEEVRRLASERAALAAELRE-------QQESHQQRL 101
Cdd:PRK10361 24 SYQHAQQKAEQLAEREEmvAELSAAKQQITQ--SEHWRAECELLNNEVRSLQSINTSLEADLREvttrmeaAQQHADDKI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 102 TDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLN 181
Cdd:PRK10361 102 RQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLN 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 182 LRLGEEATNLTRALKG-QKTQGNWGELVLERVLEHAGLEKGREYETQVSLKGAEGERFQPDVLIRLPGDKQVVVDAKVSL 260
Cdd:PRK10361 182 AQMAQEAINLTRALKGdNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 261 TAYQQYIAADDDLLRQQALKQHVTSLRNHVKGLSGKDYRRLEGLHSLDFVLLFMPIEAAFSTALQAEPNLFQDAFAQNIV 340
Cdd:PRK10361 262 VAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIM 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 341 IVSPTTLLATLRVIDSLWRQERQNQNAREIAERAGSLYDKFVLFVQDLDEVGSRLQQLDKAYAAARNKLTEGRGNLISRS 420
Cdd:PRK10361 342 LVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQA 421
|
410 420
....*....|....*....|..
gi 1143318481 421 EQLKLLGARASKSLPTDWLDRA 442
Cdd:PRK10361 422 EAFRGLGVEIKREINPDLAEQA 443
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
5-129 |
9.04e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 9.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 5 RLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREA-ELMGEERQRASQAEARWASERQGREEEVRRLASER 83
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERERRR 361
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 84 AAL--------------AAELREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQR 129
Cdd:COG4913 362 ARLeallaalglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-196 |
1.19e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 1 MLGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLA 80
Cdd:TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 81 SERAALAAE---LREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQ--------RFAETSQQRLGQMLDPLKERI 149
Cdd:TIGR02168 344 EKLEELKEElesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQiaslnneiERLEARLERLEDRRERLQQEI 423
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1143318481 150 QAFEKRVEESYQQEARERFS-LSKELERLQQLNLRLGEEATNLTRALK 196
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEeLEEELEELQEELERLEEALEELREELE 471
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
10-179 |
3.67e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 10 QLAQDGLNAQLETSREAYQQLGER---HARLSGEVAALRREaELMGEERQRASQAEARW-----ASERQGREEEVRRLAS 81
Cdd:pfam17380 364 RIRQEEIAMEISRMRELERLQMERqqkNERVRQELEAARKV-KILEEERQRKIQQQKVEmeqirAEQEEARQREVRRLEE 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 82 ERAALAAELREQQESHQQRLTDLQSARDELRAQFAELAGkifDEREQRFAEtsqqrlgqmldplKERIQAFEKRVEESYQ 161
Cdd:pfam17380 443 ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEK---EKRDRKRAE-------------EQRRKILEKELEERKQ 506
|
170 180
....*....|....*....|.
gi 1143318481 162 ---QEARERFSLSKELERLQQ 179
Cdd:pfam17380 507 amiEEERKRKLLEKEMEERQK 527
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
14-201 |
2.60e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 14 DGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEArwaserqgrEEEVRRLASERAALAAELREQ 93
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI---------GELEAEIASLERSIAEKEREL 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 94 QEShQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAETSQ-QRLGQMLDPLKERIQAFEKRVEE------SYQQE--- 163
Cdd:TIGR02169 318 EDA-EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEyAELKEELEDLRAELEEVDKEFAEtrdelkDYREKlek 396
|
170 180 190
....*....|....*....|....*....|....*....
gi 1143318481 164 -ARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKTQ 201
Cdd:TIGR02169 397 lKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
21-188 |
8.18e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 21 ETSREAYQQLGERHARLSGEVAALRREaELMGEERQRASQAEARWASERQGREEEVRRLASERAALAAELREQQESHQQR 100
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 101 LTDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERiQAFEKRVEESYQQEARERFSLSKELERLQQL 180
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK-EAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
....*...
gi 1143318481 181 NLRLGEEA 188
Cdd:PTZ00121 1742 DKKKAEEA 1749
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
14-180 |
2.40e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 14 DGLNAQLETSREAYQQLGERHARLSGEVAALRreaelmgeERQRASQAEARwaSERQGREEEVRRLASERAALAAELREQ 93
Cdd:smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLR--------DRKDALEEELR--QLKQLEDELEDCDPTELDRAKEKLKKL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 94 QESHQQRLTDLqsarDELRAQFAELAGKIFDEREQrfaetsqqrlgqmLDPLKERIQAFEKRVEESYQQEARERFSLSKE 173
Cdd:smart00787 217 LQEIMIKVKKL----EELEEELQELESKIEDLTNK-------------KSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQ 279
|
....*..
gi 1143318481 174 LERLQQL 180
Cdd:smart00787 280 LKLLQSL 286
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RmuC |
COG1322 |
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ... |
107-450 |
3.46e-140 |
|
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];
Pssm-ID: 440933 Cd Length: 342 Bit Score: 405.32 E-value: 3.46e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 107 ARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGE 186
Cdd:COG1322 3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 187 EATNLTRALKGQKTQGNWGELVLERVLEHAGLEKGREYETQVSLKGAEGERFQPDVLIRLPGDKQVVVDAKVSLTAYQQY 266
Cdd:COG1322 83 EVGNLTRALKNKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYERL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 267 IAADDDLLRQQALKQHVTSLRNHVKGLSGKDYRRLEGLHSLDFVLLFMPIEAAFSTALQAEPNLFQDAFAQNIVIVSPTT 346
Cdd:COG1322 163 VEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPTT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 347 LLATLRVIDSLWRQERQNQNAREIAERAGSLYDKFVLFVQDLDEVGSRLQQLDKAYAAARNKLTegrGNLISRSEQLKLL 426
Cdd:COG1322 243 LMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEEL 319
|
330 340
....*....|....*....|....
gi 1143318481 427 GARASKSLPtDWLDRALVAPVEEA 450
Cdd:COG1322 320 GAEEKKELP-ELLEEAREEAEDEE 342
|
|
| RmuC |
pfam02646 |
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ... |
136-428 |
1.12e-129 |
|
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Pssm-ID: 460637 Cd Length: 286 Bit Score: 376.07 E-value: 1.12e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 136 QRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKTQGNWGELVLERVLEH 215
Cdd:pfam02646 1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALKNPKTRGNWGEVQLERILEQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 216 AGLEKGREYETQVSLKGAEGeRFQPDVLIRLPGDKQVVVDAKVSLTAYQQYIAADDDLLRQQALKQHVTSLRNHVKGLSG 295
Cdd:pfam02646 81 SGLREGCDYETQVSLTDEEG-RLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLSS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 296 KDYRRLEglhSLDFVLLFMPIEAAFSTALQAEPNLFQDAFAQNIVIVSPTTLLATLRVIDSLWRQERQNQNAREIAERAG 375
Cdd:pfam02646 160 KDYWDLP---SPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELAG 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1143318481 376 SLYDKFVLFVQDLDEVGSRLQQLDKAYAAARNKLTegrGNLISRSEQLKLLGA 428
Cdd:pfam02646 237 ELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLE---GNLLRRARKLEELGV 286
|
|
| PRK10361 |
PRK10361 |
DNA recombination protein RmuC; Provisional |
31-442 |
1.62e-115 |
|
DNA recombination protein RmuC; Provisional
Pssm-ID: 182409 [Multi-domain] Cd Length: 475 Bit Score: 347.36 E-value: 1.62e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 31 GERHARLSGEVAALRRE--AELMGEERQRASqaEARWASERQGREEEVRRLASERAALAAELRE-------QQESHQQRL 101
Cdd:PRK10361 24 SYQHAQQKAEQLAEREEmvAELSAAKQQITQ--SEHWRAECELLNNEVRSLQSINTSLEADLREvttrmeaAQQHADDKI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 102 TDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLN 181
Cdd:PRK10361 102 RQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLN 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 182 LRLGEEATNLTRALKG-QKTQGNWGELVLERVLEHAGLEKGREYETQVSLKGAEGERFQPDVLIRLPGDKQVVVDAKVSL 260
Cdd:PRK10361 182 AQMAQEAINLTRALKGdNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 261 TAYQQYIAADDDLLRQQALKQHVTSLRNHVKGLSGKDYRRLEGLHSLDFVLLFMPIEAAFSTALQAEPNLFQDAFAQNIV 340
Cdd:PRK10361 262 VAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIM 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 341 IVSPTTLLATLRVIDSLWRQERQNQNAREIAERAGSLYDKFVLFVQDLDEVGSRLQQLDKAYAAARNKLTEGRGNLISRS 420
Cdd:PRK10361 342 LVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQA 421
|
410 420
....*....|....*....|..
gi 1143318481 421 EQLKLLGARASKSLPTDWLDRA 442
Cdd:PRK10361 422 EAFRGLGVEIKREINPDLAEQA 443
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
4-432 |
2.33e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLASER 83
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 84 AALAAELREQQES---HQQRLTDLQSARDELRAQFAELAGKIFDE-REQRFAETSQQRLGQMLDPLKERIQAFE---KRV 156
Cdd:COG1196 347 EEAEEELEEAEAElaeAEEALLEAEAELAEAEEELEELAEELLEAlRAAAELAAQLEELEEAEEALLERLERLEeelEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 157 EESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKTQGNWGELVLERVLEHAGLEKGREYETQVSLKGAEGE 236
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 237 RFQ---PDVLIRLPGDKQVVVDAKVSLTAYQQYIAADDDLLRQQALKQHVTSLRNHVKGLSGKDYRRLEGLHSLdfvllf 313
Cdd:COG1196 507 LEGvkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD------ 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 314 mpiEAAFSTALQAEPNLFQDAFAQNIVIVSPTTLLATLRVIDSLWRQERQNQNAREIAERAGSLYDKFVLFVQDLDEVGS 393
Cdd:COG1196 581 ---KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
410 420 430
....*....|....*....|....*....|....*....
gi 1143318481 394 RLQQLDKAYAAARNKLTEGRGNLISRSEQLKLLGARASK 432
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-295 |
9.36e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 9.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLAS 81
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 82 ERAALAAE---LREQQESHQQRLTDLQSARDELRAQFAELAGKIfDEREQRFAETSQQRLgqmldPLKERIQAFEKRVEE 158
Cdd:COG1196 317 RLEELEEElaeLEEELEELEEELEELEEELEEAEEELEEAEAEL-AEAEEALLEAEAELA-----EAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 159 SYQQEARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKtqgnwgELVLERVLEHAGLEKGREYETQVSLKGAEGERF 238
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA------ELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1143318481 239 QPDVLIRLPGDKQVVVDAKVSLTAYQQYIAADDDLLRQQALKQHVTSLRNHVKGLSG 295
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
5-129 |
9.04e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 9.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 5 RLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREA-ELMGEERQRASQAEARWASERQGREEEVRRLASER 83
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERERRR 361
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 84 AAL--------------AAELREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQR 129
Cdd:COG4913 362 ARLeallaalglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-196 |
1.19e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 1 MLGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLA 80
Cdd:TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 81 SERAALAAE---LREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQ--------RFAETSQQRLGQMLDPLKERI 149
Cdd:TIGR02168 344 EKLEELKEElesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQiaslnneiERLEARLERLEDRRERLQQEI 423
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1143318481 150 QAFEKRVEESYQQEARERFS-LSKELERLQQLNLRLGEEATNLTRALK 196
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEeLEEELEELQEELERLEEALEELREELE 471
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
18-194 |
1.24e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 18 AQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASER--QGREEEVRRLASERAALAA------E 89
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDAssddlaA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 90 LREQQESHQQRLTDLQSARDELRAQFAELAGKIfDEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEE--SYQQEARER 167
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLELRALLEERFAAalGDAVERELR 768
|
170 180
....*....|....*....|....*..
gi 1143318481 168 FSLSKELERLQQLNLRLGEEATNLTRA 194
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
32-201 |
2.77e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 32 ERHARLSGEvaALRREAELMGEERQRASQAEARWASERQGREEEVRRLASERAALAAELREQQESHQQRLTDLQSARDEL 111
Cdd:COG1196 213 ERYRELKEE--LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 112 RAQFAELAGKifdEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGEEATNL 191
Cdd:COG1196 291 YELLAELARL---EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170
....*....|
gi 1143318481 192 TRALKGQKTQ 201
Cdd:COG1196 368 LEAEAELAEA 377
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
10-179 |
3.67e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 10 QLAQDGLNAQLETSREAYQQLGER---HARLSGEVAALRREaELMGEERQRASQAEARW-----ASERQGREEEVRRLAS 81
Cdd:pfam17380 364 RIRQEEIAMEISRMRELERLQMERqqkNERVRQELEAARKV-KILEEERQRKIQQQKVEmeqirAEQEEARQREVRRLEE 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 82 ERAALAAELREQQESHQQRLTDLQSARDELRAQFAELAGkifDEREQRFAEtsqqrlgqmldplKERIQAFEKRVEESYQ 161
Cdd:pfam17380 443 ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEK---EKRDRKRAE-------------EQRRKILEKELEERKQ 506
|
170 180
....*....|....*....|.
gi 1143318481 162 ---QEARERFSLSKELERLQQ 179
Cdd:pfam17380 507 amiEEERKRKLLEKEMEERQK 527
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2-195 |
1.40e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQLAQDGLNAQLETSReaYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLAS 81
Cdd:COG4913 260 LAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 82 ERAAlaaELREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQrFAETSQQ--RLGQMLDPLKERIQAFEKRVEES 159
Cdd:COG4913 338 DRLE---QLEREIERLERELEERERRRARLEALLAALGLPLPASAEE-FAALRAEaaALLEALEEELEALEEALAEAEAA 413
|
170 180 190
....*....|....*....|....*....|....*.
gi 1143318481 160 YQQEARERFSLSKELERLQQLNLRLGEEATNLTRAL 195
Cdd:COG4913 414 LRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
19-181 |
2.35e-05 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 46.48 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 19 QLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQA---EARWASERQGREEEVRRLASERAALAAELREQQE 95
Cdd:pfam15709 347 RLEVERKRREQEEQRRLQQEQLERAEKMREELELEQQRRFEEIrlrKQRLEEERQRQEEEERKQRLQLQAAQERARQQQE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 96 SHQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAEtSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELE 175
Cdd:pfam15709 427 EFRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAE-EQKRLMEMAEEERLEYQRQKQEAEEKARLEAEERRQKEEEAA 505
|
....*.
gi 1143318481 176 RLQQLN 181
Cdd:pfam15709 506 RLALEE 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
14-201 |
2.60e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 14 DGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEArwaserqgrEEEVRRLASERAALAAELREQ 93
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI---------GELEAEIASLERSIAEKEREL 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 94 QEShQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAETSQ-QRLGQMLDPLKERIQAFEKRVEE------SYQQE--- 163
Cdd:TIGR02169 318 EDA-EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEyAELKEELEDLRAELEEVDKEFAEtrdelkDYREKlek 396
|
170 180 190
....*....|....*....|....*....|....*....
gi 1143318481 164 -ARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKTQ 201
Cdd:TIGR02169 397 lKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
17-179 |
3.21e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 17 NAQLETSREaYQQLGERHARLSGEVAALRREaelmgEERQRASQAEARWASERQGRE----EEVRRLASERAALAAELRE 92
Cdd:COG3096 498 RELLRRYRS-QQALAQRLQQLRAQLAELEQR-----LRQQQNAERLLEEFCQRIGQQldaaEELEELLAELEAQLEELEE 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 93 QQESHQQRLTDLQSARDELRAQFAELAGK-----IFDEREQRFAETSQQRL--GQMLDPLKERIQAFEKRVEESYQQEAR 165
Cdd:COG3096 572 QAAEAVEQRSELRQQLEQLRARIKELAARapawlAAQDALERLREQSGEALadSQEVTAAMQQLLEREREATVERDELAA 651
|
170
....*....|....
gi 1143318481 166 ERFSLSKELERLQQ 179
Cdd:COG3096 652 RKQALESQIERLSQ 665
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-194 |
4.00e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERH-------ARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEV 76
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVeqleeriAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 77 RRLASERAALAAELREQQESH----------QQRLTDLQSARDELRAQFAELAGKIFDEREQR-FAETSQQRLGQMLDPL 145
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELtllneeaanlRERLESLERRIAATERRLEDLEEQIEELSEDIeSLAAEIEELEELIEEL 871
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1143318481 146 KERIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRA 194
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2-179 |
4.03e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQLAQDGLNAQ---LETSREAYQQLGERHARLSgEVAALRREAELMGEERQRASQAEARWA---SERQGREEE 75
Cdd:COG4913 622 LEEELAEAEERLEALEAEldaLQERREALQRLAEYSWDEI-DVASAEREIAELEAELERLDASSDDLAaleEQLEELEAE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 76 VRRLASERaalaAELREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQmldplkERIQAFEKR 155
Cdd:COG4913 701 LEELEEEL----DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD------AVERELREN 770
|
170 180
....*....|....*....|....
gi 1143318481 156 VEESYQQEARERFSLSKELERLQQ 179
Cdd:COG4913 771 LEERIDALRARLNRAEEELERAMR 794
|
|
| COG5283 |
COG5283 |
Phage-related tail protein [Mobilome: prophages, transposons]; |
2-120 |
4.75e-05 |
|
Phage-related tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444094 [Multi-domain] Cd Length: 747 Bit Score: 46.00 E-value: 4.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLAS 81
Cdd:COG5283 12 FKSALESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAGIDTRQLSAAQRRLRS 91
|
90 100 110
....*....|....*....|....*....|....*....
gi 1143318481 82 ERAALAAELREQQEShQQRLTDLQSARDELRAQFAELAG 120
Cdd:COG5283 92 SLEQTNRQLERQQQR-LARLGARQDRLKAARARLQRLAG 129
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
21-188 |
8.18e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 21 ETSREAYQQLGERHARLSGEVAALRREaELMGEERQRASQAEARWASERQGREEEVRRLASERAALAAELREQQESHQQR 100
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 101 LTDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERiQAFEKRVEESYQQEARERFSLSKELERLQQL 180
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK-EAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
....*...
gi 1143318481 181 NLRLGEEA 188
Cdd:PTZ00121 1742 DKKKAEEA 1749
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-194 |
1.23e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAAL--------------RREAELMGEERQRASQAEARWAS 67
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaaeieeleelieelESELEALLNERASLEEALALLRS 894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 68 ERQGREEEVRRLASERAALAAELREQQESH---QQRLTDLQSARDELRAQFAELAGKIFDE--REQRFAETSQQRLGQML 142
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLaqlELRLEGLEVRIDNLQERLSEEYSLTLEEaeALENKIEDDEEEARRRL 974
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1143318481 143 DPLKERIQAFE----------KRVEESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRA 194
Cdd:TIGR02168 975 KRLENKIKELGpvnlaaieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
19-179 |
1.58e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 19 QLETSREAYQQLGERHARLSGEVAALRREAELmgeerQRASQAEARWASERQGR----EEEVRRLASERAALAAELREQQ 94
Cdd:PRK04863 500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQ-----QQRAERLLAEFCKRLGKnlddEDELEQLQEELEARLESLSESV 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 95 ESHQQRLTDLQSARDELRAQFAELAGK-----IFDEREQRFAETSQQRL--GQMLDPLKERIQAFEKRVEESYQQEARER 167
Cdd:PRK04863 575 SEARERRMALRQQLEQLQARIQRLAARapawlAAQDALARLREQSGEEFedSQDVTEYMQQLLERERELTVERDELAARK 654
|
170
....*....|..
gi 1143318481 168 FSLSKELERLQQ 179
Cdd:PRK04863 655 QALDEEIERLSQ 666
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2-196 |
2.09e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQlaqdglnAQLETSREA---YQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGR---EEE 75
Cdd:PRK04863 892 LADRVEEIR-------EQLDEAEEAkrfVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAfalTEV 964
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 76 VRRLA----SERAALAAELREQQESHQQRLTDLQSARDELRAQFAELAGKiFDEREQRFAE--TSQQRLGQMLDPLKERI 149
Cdd:PRK04863 965 VQRRAhfsyEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQ-LAQYNQVLASlkSSYDAKRQMLQELKQEL 1043
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1143318481 150 QAFEKRVEESYQQEARERFS-LSKEL----ERLQQLNLRLG---EEATNLTRALK 196
Cdd:PRK04863 1044 QDLGVPADSGAEERARARRDeLHARLsanrSRRNQLEKQLTfceAEMDNLTKKLR 1098
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1-201 |
2.29e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 1 MLGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLA 80
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 81 SERAALAAELREQQESHQQRLTDLQ------------SARDELRAQ-FAELAGKIFDEREQRFAETSQQRlgQMLDPLKE 147
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYrlgrqpplalllSPEDFLDAVrRLQYLKYLAPARREQAEELRADL--AELAALRA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1143318481 148 RIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKTQ 201
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-209 |
2.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLAS 81
Cdd:COG4942 67 LARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 82 ERAALAAELREQQESHQQRLTDLQSARDELRAQFAELagkifdEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEEsyq 161
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAEL------EEERAALEALKAERQKLLARLEKELAELAAELAE--- 217
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1143318481 162 qearerfsLSKELERLQQLNLRLGEEATNLTRALKGQKTQGNWGELVL 209
Cdd:COG4942 218 --------LQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
14-180 |
2.40e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 14 DGLNAQLETSREAYQQLGERHARLSGEVAALRreaelmgeERQRASQAEARwaSERQGREEEVRRLASERAALAAELREQ 93
Cdd:smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLR--------DRKDALEEELR--QLKQLEDELEDCDPTELDRAKEKLKKL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 94 QESHQQRLTDLqsarDELRAQFAELAGKIFDEREQrfaetsqqrlgqmLDPLKERIQAFEKRVEESYQQEARERFSLSKE 173
Cdd:smart00787 217 LQEIMIKVKKL----EELEEELQELESKIEDLTNK-------------KSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQ 279
|
....*..
gi 1143318481 174 LERLQQL 180
Cdd:smart00787 280 LKLLQSL 286
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
4-195 |
2.89e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQdgLNAQLETSREAYQQLGERHARLSGEVAALRREAE----LMGEERQRASQAEARWASERQG----REEE 75
Cdd:PRK11281 116 ETLSTLSLRQ--LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPEraqaALYANSQRLQQIRNLLKGGKVGgkalRPSQ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 76 VRRLASERAALAAELREQQESHQ--QRLTDL-QSARDELRAQfaelagkifdereqrfaetsQQRLGQMLDPLKE----- 147
Cdd:PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEgnTQLQDLlQKQRDYLTAR--------------------IQRLEHQLQLLQEainsk 253
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1143318481 148 RIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGE---EATNLTRAL 195
Cdd:PRK11281 254 RLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQrllKATEKLNTL 304
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
18-187 |
3.68e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 3.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 18 AQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWAserqgREEEVRRLASERAALAAELrEQQESH 97
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERL-EELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 98 QQRLTDLQSARDELRAQFAELAGKIfDEREQRFAETSQQRLGQMLDPLkERIQAFEKRVEESYQQEARERFSLSKELERL 177
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAEEL-EELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170
....*....|
gi 1143318481 178 QQLNLRLGEE 187
Cdd:COG4717 233 ENELEAAALE 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
4-187 |
4.09e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRR-------EAELMGEERQRASQAEARWASERQGREEEV 76
Cdd:TIGR02169 777 LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQklnrltlEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 77 RRLASERAALAAELREQQESHQQ---RLTDLQSARDELRAQFAELagkifdEREQRFAETSQQRLGQMLDPLKERIQAFE 153
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDlesRLGDLKKERDELEAQLREL------ERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
170 180 190
....*....|....*....|....*....|....*..
gi 1143318481 154 KRVEEsYQQEARERFSLSKE---LERLQQLNLRLGEE 187
Cdd:TIGR02169 931 EELSE-IEDPKGEDEEIPEEelsLEDVQAELQRVEEE 966
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
18-149 |
4.87e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 18 AQLETSREAYQQLGERHARLsgeVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLAS---ERAALAAELREQQ 94
Cdd:COG4942 132 LDAVRRLQYLKYLAPARREQ---AEELRADLAELAALRAELEAERAELEALLAELEEERAALEAlkaERQKLLARLEKEL 208
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1143318481 95 ESHQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERI 149
Cdd:COG4942 209 AELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPWPVSGRV 263
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
18-201 |
7.47e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 18 AQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLASERAALAAELREQQESH 97
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 98 QQRLTDLQSARDELRAQFAELAGKIFD--EREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELE 175
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDRLEqlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE 394
|
170 180
....*....|....*....|....*.
gi 1143318481 176 RLQQLNLRLGEEATNLTRALKGQKTQ 201
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRE 420
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
21-201 |
9.04e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 9.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 21 ETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASqaEARWASERQGREEEVRRLASERAALAAELREQQEShQQR 100
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD--EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA-KKK 1511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 101 LTDLQSARDELRAQFAELAGKIFDEREQRFAEtsQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQL 180
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAE--EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKA 1589
|
170 180
....*....|....*....|.
gi 1143318481 181 NLRLGEEATNLTRALKGQKTQ 201
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAE 1610
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
31-183 |
9.04e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 9.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 31 GERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLASERAALAAELREQQESHQQRLTDLQSARDE 110
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1143318481 111 LRAQFAELAgkifdEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEA--RERFSLSKELERLQQLNLR 183
Cdd:COG1196 716 RLEEELEEE-----ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEleRELERLEREIEALGPVNLL 785
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2-122 |
1.20e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 2 LGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSG---------EVAALRREAELMGEERQRASQAEARWASERQGR 72
Cdd:COG1579 43 LEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgnvrnnkEYEALQKEIESLKRRISDLEDEILELMERIEEL 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1143318481 73 EEEVRRLASERAALAAELREQQESHQQRLTDLQSARDELRAQFAELAGKI 122
Cdd:COG1579 123 EEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
4-184 |
1.38e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARwASERQGREEEVRRLASER 83
Cdd:PRK02224 537 ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL-LAAIADAEDEIERLREKR 615
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 84 AALAaelrEQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQRfAETSQQRLGQMLDPLKERIQAFEKRVeESYQQE 163
Cdd:PRK02224 616 EALA----ELNDERRERLAEKRERKRELEAEFDEARIEEAREDKER-AEEYLEQVEEKLDELREERDDLQAEI-GAVENE 689
|
170 180
....*....|....*....|.
gi 1143318481 164 ARERFSLSKELERLQQLNLRL 184
Cdd:PRK02224 690 LEELEELRERREALENRVEAL 710
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
73-173 |
1.49e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 73 EEEVRRLASERAALAaelREQQESHQQRLTDLQSARDELRAQFAELAGKifdEREQRFAETSQQRLGQMLDPLKERIQAF 152
Cdd:COG0542 417 ERRLEQLEIEKEALK---KEQDEASFERLAELRDELAELEEELEALKAR---WEAEKELIEEIQELKEELEQRYGKIPEL 490
|
90 100
....*....|....*....|.
gi 1143318481 153 EKRVEESYQQEARERFSLSKE 173
Cdd:COG0542 491 EKELAELEEELAELAPLLREE 511
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
4-222 |
1.82e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQaearwaSERQGREEEVRRLASER 83
Cdd:pfam12128 625 EQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN------ERLNSLEAQLKQLDKKH 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 84 AALAAELREQ-QESHQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRL------------GQMLDPLKERIQ 150
Cdd:pfam12128 699 QAWLEEQKEQkREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETwykrdlaslgvdPDVIAKLKREIR 778
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1143318481 151 AFEKRVE--ESYQQEARERFSLSKelERLQQLNLRLGEEATNLTRALkgQKTQGNWGELVLERVLEHAGLEKGR 222
Cdd:pfam12128 779 TLERKIEriAVRRQEVLRYFDWYQ--ETWLQRRPRLATQLSNIERAI--SELQQQLARLIADTKLRRAKLEMER 848
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
4-196 |
2.40e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAqlETSREAYQQLGERHARLSGEVaalRREAELMGEERQRASQAEARWASERqgREEEVRRLASER 83
Cdd:PTZ00121 1152 KRVEIARKAEDARKA--EEARKAEDAKKAEAARKAEEV---RKAEELRKAEDARKAEAARKAEEER--KAEEARKAEDAK 1224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 84 AALAAELREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQ- 162
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKa 1304
|
170 180 190
....*....|....*....|....*....|....*
gi 1143318481 163 -EARERFSLSKELERLQqlnlRLGEEATNLTRALK 196
Cdd:PTZ00121 1305 dEAKKKAEEAKKADEAK----KKAEEAKKKADAAK 1335
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
16-193 |
3.01e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.12 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 16 LNAQLETSREAYQQLGERhARLSGEVAALR--REAELMGEERQRASQAEA----RWASERQGREEEVRrlasERAALAAE 89
Cdd:pfam07111 493 LDAELQLSAHLIQQEVGR-AREQGEAERQQlsEVAQQLEQELQRAQESLAsvgqQLEVARQGQQESTE----EAASLRQE 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 90 LREQQESHQQRLTD-LQSARDELRAQFAELAGKIFD-EREQRFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARER 167
Cdd:pfam07111 568 LTQQQEIYGQALQEkVAEVETRLREQLSDTKRRLNEaRREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRL 647
|
170 180
....*....|....*....|....*.
gi 1143318481 168 FSLSKELERLQQLNLRLGEEATNLTR 193
Cdd:pfam07111 648 ARRVQELERDKNLMLATLQQEGLLSR 673
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
4-167 |
3.66e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARL---SGEVAALRREAELMGEERQRASQAEARWASERQGREEEVRRLA 80
Cdd:PRK02224 499 ERAEDLVEAEDRIERLEERREDLEELIAERRETIeekRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 81 SERAALAAElREQQEshqqRLTDLQSARDELRAQFAELAgkifdEREQRFAETSQQRLGQmLDPLKERIQAFEKRVEESY 160
Cdd:PRK02224 579 SKLAELKER-IESLE----RIRTLLAAIADAEDEIERLR-----EKREALAELNDERRER-LAEKRERKRELEAEFDEAR 647
|
....*..
gi 1143318481 161 QQEARER 167
Cdd:PRK02224 648 IEEARED 654
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
21-191 |
3.85e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 21 ETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEarwaSERQGREEEVRRLASERAALAAELREQQESHQQR 100
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR----EELEDRDEELRDRLEECRVAAQAHNEEAESLRED 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 101 LTDLQSARDELRAQFAELAGKIFDEREQRfaETSQQRlgqmLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQL 180
Cdd:PRK02224 351 ADDLEERAEELREEAAELESELEEAREAV--EDRREE----IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
|
170
....*....|.
gi 1143318481 181 NLRLGEEATNL 191
Cdd:PRK02224 425 REREAELEATL 435
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
53-138 |
5.86e-03 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 37.33 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 53 EERQRASQAEARWASERQGREEEVRRLASER--------AALAAELREQQESHQQRLTDLQSARDELRAQFAELAGKIFD 124
Cdd:pfam05672 40 EERLRKEELRRRAEEERARREEEARRLEEERrreeeerqRKAEEEAEEREQREQEEQERLQKQKEEAEAKAREEAERQRQ 119
|
90
....*....|....
gi 1143318481 125 EREQRFAETSQQRL 138
Cdd:pfam05672 120 EREKIMQQEEQERL 133
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
4-164 |
6.39e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 38.84 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELmGEERQRASQAEARWASERQGREEE---VRRLA 80
Cdd:COG3206 219 QQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVI-QQLRAQLAELEAELAELSARYTPNhpdVIALR 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 81 SERAALAAELREQQeshQQRLTDLQSARDELRAQFAELAGKIFDEREQ--RFAETSQQ--RLGQMLDPLKERIQAFEKRV 156
Cdd:COG3206 298 AQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQLAQLEARlaELPELEAElrRLEREVEVARELYESLLQRL 374
|
....*...
gi 1143318481 157 EESYQQEA 164
Cdd:COG3206 375 EEARLAEA 382
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
4-129 |
8.40e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 37.60 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRR-----EAELMG----EERQRASQAEARWASERQGREE 74
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEArikkyEEQLGNvrnnKEYEALQKEIESLKRRISDLED 110
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1143318481 75 EVRRLASERAALAAELREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQR 129
Cdd:COG1579 111 EILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER 165
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
4-117 |
8.44e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 38.74 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143318481 4 ERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRAS-QAEARWASERQGREEEV--RRLA 80
Cdd:COG4913 678 ERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdRLEAAEDLARLELRALLeeRFAA 757
|
90 100 110
....*....|....*....|....*....|....*...
gi 1143318481 81 SERAALAAELREQQESHQQRL-TDLQSARDELRAQFAE 117
Cdd:COG4913 758 ALGDAVERELRENLEERIDALrARLNRAEEELERAMRA 795
|
|
| |
