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Conserved domains on  [gi|1091083678|gb|OHQ17238|]
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preprotein translocase subunit SecA [Rothia sp. HMSC064F07]

Protein Classification

YchJ family protein( domain architecture ID 11459551)

YchJ family protein similar to Escherichia coli UPF0225 protein YchJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 7-142 2.91e-64

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


:

Pssm-ID: 442249  Cd Length: 144  Bit Score: 192.37  E-value: 2.91e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   7 DDRCPCSSGEVYGACCGRFLgefaaSGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE-----DDIRWY 81
Cdd:COG3012     3 NSPCPCGSGKPYADCCGPYH-----AGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEieawaPGTQWL 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1091083678  82 RLDILGASGGPFDASGTVEFVAYYRsvpgvpaEDRVKGSMHELSRFEKVGGAWFYVDGDVR 142
Cdd:COG3012    78 GLEILATEAGPDDDEGTVEFVARYR-------EGGRAGRLHERSRFVREDGRWYYVDGEVA 131
 
Name Accession Description Interval E-value
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 7-142 2.91e-64

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 192.37  E-value: 2.91e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   7 DDRCPCSSGEVYGACCGRFLgefaaSGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE-----DDIRWY 81
Cdd:COG3012     3 NSPCPCGSGKPYADCCGPYH-----AGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEieawaPGTQWL 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1091083678  82 RLDILGASGGPFDASGTVEFVAYYRsvpgvpaEDRVKGSMHELSRFEKVGGAWFYVDGDVR 142
Cdd:COG3012    78 GLEILATEAGPDDDEGTVEFVARYR-------EGGRAGRLHERSRFVREDGRWYYVDGEVA 131
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 40-139 5.83e-43

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 136.93  E-value: 5.83e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678  40 PEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE-----DDIRWYRLDILGASGGPFDASGTVEFVAYYRsvpgvpaE 114
Cdd:pfam17775   2 AEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAEleewaQSTKWLGLEILSTEAGPDDDEGFVEFKARYR-------E 74

                          90       100
                  ....*....|....*....|....*
gi 1091083678 115 DRVKGSMHELSRFEKVGGAWFYVDG 139
Cdd:pfam17775  75 GGQLQTLHERSRFVREDGRWYYVDG 99
PRK01617 PRK01617
hypothetical protein; Provisional
 1-139 1.32e-37

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 125.14  E-value: 1.32e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   1 MTELnhddrCPCSSGEVYGACCGRFLgefaaSGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE----- 75
Cdd:PRK01617    1 MSQL-----CPCGSALEYSLCCQPYL-----SGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEiiagf 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1091083678  76 DDIRWYRLDILGASGGPFDASGTVEFVAYYRSvpgvpAEDRVKGSMHELSRFEKVGGAWFYVDG 139
Cdd:PRK01617   71 ANTEWLGLTVFEHTWGDADNEGFVEFVARFTE-----GGKTGRTAIIERSRFLKENGQWYYIDG 129
 
Name Accession Description Interval E-value
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 7-142 2.91e-64

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 192.37  E-value: 2.91e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   7 DDRCPCSSGEVYGACCGRFLgefaaSGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE-----DDIRWY 81
Cdd:COG3012     3 NSPCPCGSGKPYADCCGPYH-----AGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEieawaPGTQWL 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1091083678  82 RLDILGASGGPFDASGTVEFVAYYRsvpgvpaEDRVKGSMHELSRFEKVGGAWFYVDGDVR 142
Cdd:COG3012    78 GLEILATEAGPDDDEGTVEFVARYR-------EGGRAGRLHERSRFVREDGRWYYVDGEVA 131
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 40-139 5.83e-43

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 136.93  E-value: 5.83e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678  40 PEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE-----DDIRWYRLDILGASGGPFDASGTVEFVAYYRsvpgvpaE 114
Cdd:pfam17775   2 AEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAEleewaQSTKWLGLEILSTEAGPDDDEGFVEFKARYR-------E 74

                          90       100
                  ....*....|....*....|....*
gi 1091083678 115 DRVKGSMHELSRFEKVGGAWFYVDG 139
Cdd:pfam17775  75 GGQLQTLHERSRFVREDGRWYYVDG 99
PRK01617 PRK01617
hypothetical protein; Provisional
 1-139 1.32e-37

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 125.14  E-value: 1.32e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   1 MTELnhddrCPCSSGEVYGACCGRFLgefaaSGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE----- 75
Cdd:PRK01617    1 MSQL-----CPCGSALEYSLCCQPYL-----SGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEiiagf 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1091083678  76 DDIRWYRLDILGASGGPFDASGTVEFVAYYRSvpgvpAEDRVKGSMHELSRFEKVGGAWFYVDG 139
Cdd:PRK01617   71 ANTEWLGLTVFEHTWGDADNEGFVEFVARFTE-----GGKTGRTAIIERSRFLKENGQWYYIDG 129
PRK01842 PRK01842
hypothetical protein; Provisional
 8-142 2.90e-27

hypothetical protein; Provisional


Pssm-ID: 234985  Cd Length: 149  Bit Score: 98.73  E-value: 2.90e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   8 DRCPCSSGEV----------YGACCGRFLgefaaSGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELE-- 75
Cdd:PRK01842   12 DACPCGGAAPgaaanaraprYAACCGRFI-----DGGAAAPTALELMRSRYSAYVLGATDYLRATWDPSTCPADLDADpa 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1091083678  76 --DDIRWYRLDILGASggPFDAS-GTVEFVAYYrsvpgvpaedRVKG---SMHELSRFEKVG-GAWFYVDGDVR 142
Cdd:PRK01842   87 aaDAPRWLGLAIKRHA--QLDAThAEVEFVARY----------KVGGrahRLHETSRFVRDEqGRWRYVDGDVS 148
PRK04233 PRK04233
hypothetical protein; Provisional
 8-138 3.26e-25

hypothetical protein; Provisional


Pssm-ID: 235261  Cd Length: 129  Bit Score: 93.07  E-value: 3.26e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   8 DRCPCSSGEVYGACCGRFLGEFAAsgtltaPAPEQLMRSRFTAFATGDAAYLLASWHPSTRPAALELEDDIR--WYRLDI 85
Cdd:PRK04233    8 DPCPCGRPADYARCCGPYHAGAAA------PDAETLMRARYSAYVRRDADYLLASWHPSTRPAELSLDEGGRttWLGLTV 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1091083678  86 LGA-SGGPfdASGTVEFVAYYRSVPGVPAEdrvkgsMHELSRFEKVGGAWFYVD 138
Cdd:PRK04233   82 QRTlETGA--DTAEVVFLARYRIGGGSAVR------MTEHSRFVREDGRWYYLD 127
PRK02250 PRK02250
hypothetical protein; Provisional
 10-140 1.39e-23

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 89.94  E-value: 1.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678  10 CPCSSGEVYGACCgrflgEFAASGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRpaALELEDDI------RWYRL 83
Cdd:PRK02250    4 CPCGSTQTYSQCC-----EPIHLNHASAQTPEQLMRSRYSAHVLGLVDYVVETYHPSCN--AEEQREGIaesihsDWLKL 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1091083678  84 DILGASGGPFDASGTVEFVAYYRsvpgvpaEDRVKGSMHELSRFEKVGGAWFYVDGD 140
Cdd:PRK02250   77 EVIKTEAGSTPNEGFVEFKAYFD-------EEGKRYCLEERSRFLKENGLWYYIDGT 126
PRK01752 PRK01752
YchJ family protein;
6-141 2.92e-16

YchJ family protein;


Pssm-ID: 179332  Cd Length: 156  Bit Score: 70.58  E-value: 2.92e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678   6 HDDRCPCSSGEVYGACCGRFlgefaASGTLTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTR----PAAL-ELEDDIRW 80
Cdd:PRK01752    4 LLEACPCQSGKHYADCCGPF-----HLRQAFPETAEQLMRSRYAAYVLKNIDYIVETTVPSQQtlldPAALqTWAENTTW 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1091083678  81 YRLDILgASGGPFDASGTVEFVAYYrsvpgvpAEDRVKGSMHELSRFEKVGGAWFYVDGDV 141
Cdd:PRK01752   79 LGLEIL-AHESLTKIHSAVEFKAIF-------QGEEGEQAHHERSLFVKIDNRWYFVDPTV 131
PRK00183 PRK00183
hypothetical protein; Provisional
 10-141 9.31e-12

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 59.04  E-value: 9.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091083678  10 CPCSSGEVYGACCGRFLgefaaSGTlTAPAPEQLMRSRFTAFATGDAAYLLASWHPSTRpAALELeDDIR-------WYR 82
Cdd:PRK00183    6 CPCGSGDLLDACCGRYH-----AGH-PAPCAEALMRSRYSAYVLGLVDYLVATTLPAQQ-AGLDR-AAIAawsaqstWLG 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1091083678  83 LDILGAS---GGPfdASGTVEFVAYYRSVPGvpaedrvKGSMHELSRFEKVGGAWFYVDGDV 141
Cdd:PRK00183   78 LEVESSEvlgGQP--EHAFVTFTARWHDADG-------EHSHRERSAFVQHQGRWYFIDPTV 130
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 8-24 1.56e-03

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 33.99  E-value: 1.56e-03
                          10
                  ....*....|....*..
gi 1091083678   8 DRCPCSSGEVYGACCGR 24
Cdd:pfam02810   3 DPCPCGSGKKYKKCCGP 19
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 8-24 4.07e-03

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 33.34  E-value: 4.07e-03
                          10
                  ....*....|....*..
gi 1091083678   8 DRCPCSSGEVYGACCGR 24
Cdd:COG3318    28 DPCPCGSGKKYKKCCGA 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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