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Conserved domains on  [gi|1083351772|gb|OGE72868|]
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di-trans,poly-cis-decaprenylcistransferase [Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_38_15]

Protein Classification

undecaprenyl diphosphate synthase family protein( domain architecture ID 10000255)

undecaprenyl diphosphate synthase (UPPS) family protein catalyzes consecutive condensation reactions of farnesyl diphosphate (FPP) with specific numbers of isopentenyl diphosphate (IPP) to form long-chain polyprenyl diphosphates, similar to UPPS that catalyzes chain elongation of FPP by eight IPP to form the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis

Gene Ontology:  GO:0016765|GO:0000287|GO:0002094
PubMed:  22471620

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
2-234 1.42e-113

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


:

Pssm-ID: 439791  Cd Length: 248  Bit Score: 325.09  E-value: 1.42e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   2 PKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNL 81
Cdd:COG0020     8 PEIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWK-RPKEEVSFLMGL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  82 IRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQ-IKKTyIKNESIKLNIALNYGGKKELVKALKEI---VKTG-I 156
Cdd:COG0020    87 LREYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEaEELT-KNNTGLTLNIALNYGGRWEIVDAVRKIardVAAGeL 165

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1083351772 157 DIKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:COG0020   166 DPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGG 243
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
2-234 1.42e-113

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 325.09  E-value: 1.42e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   2 PKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNL 81
Cdd:COG0020     8 PEIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWK-RPKEEVSFLMGL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  82 IRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQ-IKKTyIKNESIKLNIALNYGGKKELVKALKEI---VKTG-I 156
Cdd:COG0020    87 LREYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEaEELT-KNNTGLTLNIALNYGGRWEIVDAVRKIardVAAGeL 165

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1083351772 157 DIKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:COG0020   166 DPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGG 243
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 12-226 1.59e-109

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 313.54  E-value: 1.59e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  12 HIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKGYTSKLK 91
Cdd:cd00475     1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWK-RPKEEVDALMKLLREYLEKELE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  92 KMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTG----IDIKRINEQLIE 167
Cdd:cd00475    80 ELHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVkageLDPEDITEELIS 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1083351772 168 KHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQ 226
Cdd:cd00475   160 KHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQ 218
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 16-233 4.40e-107

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 307.75  E-value: 4.40e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  16 IMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKGYTSK-LKKMI 94
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWK-RPKEEVDALMELLKEEYLRReLPELH 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  95 QKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTG--IDIKRINEQLIEKHLYT 172
Cdd:pfam01255  80 KNGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGkkLDPEDIDEELISSHLYT 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1083351772 173 NGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:pfam01255 160 AGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 5-234 3.51e-96

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 280.99  E-value: 3.51e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   5 DKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIRK 84
Cdd:PRK14830   18 DKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTEN-WKRPKDEVKFLMNLPVE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  85 GYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQ-IKKTYiKNESIKLNIALNYGGKKELVKALKEIVKT----GIDIK 159
Cdd:PRK14830   97 FLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKaIEKTK-NNTGLILNFALNYGGRAEIVSAVKEIAKDvldgKLNPE 175

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1083351772 160 RINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14830  176 DITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGG 250
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 12-233 4.29e-75

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 226.90  E-value: 4.29e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  12 HIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKGYTSKLK 91
Cdd:TIGR00055   2 HVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWK-RPKEEVDFLMELFEKKLDREVK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  92 KMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEI---VKTG-IDIKRINEQLIE 167
Cdd:TIGR00055  81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIaekVKSGkLLPEDIDEETLN 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083351772 168 KHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:TIGR00055 161 KHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
 
Name Accession Description Interval E-value
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
2-234 1.42e-113

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 325.09  E-value: 1.42e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   2 PKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNL 81
Cdd:COG0020     8 PEIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWK-RPKEEVSFLMGL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  82 IRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQ-IKKTyIKNESIKLNIALNYGGKKELVKALKEI---VKTG-I 156
Cdd:COG0020    87 LREYLRRELDELHKNNVRVRVIGDRSRLPESLQEAIEEaEELT-KNNTGLTLNIALNYGGRWEIVDAVRKIardVAAGeL 165

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1083351772 157 DIKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:COG0020   166 DPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRERRFGG 243
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 12-226 1.59e-109

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 313.54  E-value: 1.59e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  12 HIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKGYTSKLK 91
Cdd:cd00475     1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWK-RPKEEVDALMKLLREYLEKELE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  92 KMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTG----IDIKRINEQLIE 167
Cdd:cd00475    80 ELHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVkageLDPEDITEELIS 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1083351772 168 KHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQ 226
Cdd:cd00475   160 KHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQ 218
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 16-233 4.40e-107

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 307.75  E-value: 4.40e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  16 IMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKGYTSK-LKKMI 94
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWK-RPKEEVDALMELLKEEYLRReLPELH 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  95 QKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTG--IDIKRINEQLIEKHLYT 172
Cdd:pfam01255  80 KNGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGkkLDPEDIDEELISSHLYT 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1083351772 173 NGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:pfam01255 160 AGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRERRFG 220
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 5-234 3.51e-96

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 280.99  E-value: 3.51e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   5 DKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIRK 84
Cdd:PRK14830   18 DKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTEN-WKRPKDEVKFLMNLPVE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  85 GYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQ-IKKTYiKNESIKLNIALNYGGKKELVKALKEIVKT----GIDIK 159
Cdd:PRK14830   97 FLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKaIEKTK-NNTGLILNFALNYGGRAEIVSAVKEIAKDvldgKLNPE 175

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1083351772 160 RINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14830  176 DITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGG 250
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 2-234 1.30e-84

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 251.79  E-value: 1.30e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   2 PKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNL 81
Cdd:PRK14831   13 ADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTEN-WSRPLEEVNFLMTL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  82 IRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEI---VKTG-ID 157
Cdd:PRK14831   92 FERVLRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIaqqVQQGeLD 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1083351772 158 IKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14831  172 PSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGG 248
PRK14832 PRK14832
undecaprenyl pyrophosphate synthase; Provisional
 2-234 3.54e-76

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237827  Cd Length: 253  Bit Score: 230.66  E-value: 3.54e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   2 PKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNL 81
Cdd:PRK14832   11 PDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQ-RPIEEVDFLMLL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  82 IRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEI---VKTG-ID 157
Cdd:PRK14832   90 FERLLRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVaelVQQGkLS 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1083351772 158 IKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14832  170 ADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFGQ 246
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 12-233 4.29e-75

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 226.90  E-value: 4.29e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  12 HIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKGYTSKLK 91
Cdd:TIGR00055   2 HVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWK-RPKEEVDFLMELFEKKLDREVK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  92 KMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEI---VKTG-IDIKRINEQLIE 167
Cdd:TIGR00055  81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIaekVKSGkLLPEDIDEETLN 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083351772 168 KHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:TIGR00055 161 KHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
PRK14834 PRK14834
isoprenyl transferase;
1-233 7.07e-74

isoprenyl transferase;


Pssm-ID: 237829  Cd Length: 249  Bit Score: 224.63  E-value: 7.07e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   1 MPKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFN 80
Cdd:PRK14834    6 KDESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSEN-WSRPASEVSDLFG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  81 LIRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEI---VKTG-I 156
Cdd:PRK14834   85 LLRLFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLareVAEGrL 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1083351772 157 DIKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:PRK14834  165 DPASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFG 241
PRK14836 PRK14836
undecaprenyl pyrophosphate synthase; Provisional
 6-234 5.45e-72

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237831  Cd Length: 253  Bit Score: 219.94  E-value: 5.45e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   6 KENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIRKG 85
Cdd:PRK14836   11 NENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSEN-WLRPADEVSALMELFLKA 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  86 YTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEI---VKTG-IDIKRI 161
Cdd:PRK14836   90 LDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALareVAAGkLAPDEI 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1083351772 162 NEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14836  170 DEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFGK 242
PRK14838 PRK14838
isoprenyl transferase;
5-234 2.16e-69

isoprenyl transferase;


Pssm-ID: 184846  Cd Length: 242  Bit Score: 212.81  E-value: 2.16e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   5 DKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIrk 84
Cdd:PRK14838    6 DMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTEN-WNRPSDEVAALMSLL-- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  85 gYTSKLKKMIQKG-VSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEI---VKTG-IDIK 159
Cdd:PRK14838   83 -LDSIEEETFMKNnIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIatlVQNGeLNPE 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1083351772 160 RINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14838  162 EITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFGK 236
PRK14840 PRK14840
undecaprenyl pyrophosphate synthase; Provisional
 7-234 2.55e-68

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173301  Cd Length: 250  Bit Score: 210.47  E-value: 2.55e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   7 ENIPSHIAIIMDGNRRWARFHD----LPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLI 82
Cdd:PRK14840   16 QSLPRHVAIIMDGNRRWYRKHEqfcqKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFS-RSKEEVAELFSLF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  83 RKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKE----IVKTGIDI 158
Cdd:PRK14840   95 NSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKlhqdLANKKISS 174

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083351772 159 KRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14840  175 DDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQQRSRRGGK 250
PRK14833 PRK14833
di-trans,poly-cis-decaprenylcistransferase;
8-233 1.04e-63

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237828  Cd Length: 233  Bit Score: 198.11  E-value: 1.04e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   8 NIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIRKGYT 87
Cdd:PRK14833    3 NTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTEN-WKRPKSEVDFLMKLLKKYLK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  88 SKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTGIDIKR---INEQ 164
Cdd:PRK14833   82 DERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSHIGeleSLEE 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1083351772 165 LIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:PRK14833  162 EISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFG 230
PRK14842 PRK14842
undecaprenyl pyrophosphate synthase; Provisional
 6-233 1.19e-60

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173303  Cd Length: 241  Bit Score: 190.58  E-value: 1.19e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   6 KENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKG 85
Cdd:PRK14842    5 ESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWK-RPITEIRSIFGLLVEF 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  86 YTSKLKKMIQKGVSVTILGEIEGLPLTV-KKIVNQIKKTYiKNESIKLNIALNYGGKKELVKALKEIV------KTGIDi 158
Cdd:PRK14842   84 IETRLDTIHARGIRIHHSGSRKKLTRTVlDKIDFAMAKTK-KNKNLTVNFCLNYGSHDELLRAAQEVFlarkakKVTLE- 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1083351772 159 KRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:PRK14842  162 KPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFG 236
PRK14841 PRK14841
undecaprenyl pyrophosphate synthase; Provisional
 9-233 2.61e-60

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173302  Cd Length: 233  Bit Score: 189.43  E-value: 2.61e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   9 IPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIRKGYTS 88
Cdd:PRK14841    3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTEN-WKRPKEEVEFLMDLFVQMIDR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  89 KLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTGIDIKRI--NEQLI 166
Cdd:PRK14841   82 EMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKKIelTEETF 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1083351772 167 EKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:PRK14841  162 RQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFG 228
PRK14828 PRK14828
undecaprenyl pyrophosphate synthase; Provisional
 5-234 6.11e-59

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237825  Cd Length: 256  Bit Score: 186.49  E-value: 6.11e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   5 DKENIPSHIAIIMDGNRRWARFHDLPDIK-GHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIqERAKREVLGLFNLIr 83
Cdd:PRK14828   22 DGAQVPGHVGIIVDGNRRWARKAGFTDVSqGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNL-GRPSEELNPLLDII- 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  84 KGYTSKLKKmiQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTGID------ 157
Cdd:PRK14828  100 EDVVRQLAP--DGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDkgtsid 177

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1083351772 158 --IKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14828  178 elAESVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256
PRK14835 PRK14835
isoprenyl transferase;
9-234 3.54e-58

isoprenyl transferase;


Pssm-ID: 237830  Cd Length: 275  Bit Score: 185.43  E-value: 3.54e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   9 IPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKgyts 88
Cdd:PRK14835   41 LPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFS-RSPAEVETLMNLFER---- 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  89 KLKKMIQ------KGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALK----EIVKTGIDI 158
Cdd:PRK14835  116 EARRMAVdprihaNRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKslllEAAATGKSP 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772 159 KRINEQL----IEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14835  196 EEVAAELtpehISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFGR 275
PRK14839 PRK14839
di-trans,poly-cis-decaprenylcistransferase;
12-233 3.22e-54

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237832  Cd Length: 239  Bit Score: 174.17  E-value: 3.22e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  12 HIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNLIRKGYTSKLK 91
Cdd:PRK14839   12 HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWR-RPAAEVGGLMRLLRAYLRNETE 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  92 KMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKAlkeiVKTGIDIKRINEQLIEKhLY 171
Cdd:PRK14839   91 RLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAA----AAKALGPEGLSREAFSD-LL 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1083351772 172 TNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:PRK14839  166 TGDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFG 227
PRK14837 PRK14837
undecaprenyl pyrophosphate synthase; Provisional
 5-234 7.51e-54

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173298  Cd Length: 230  Bit Score: 172.70  E-value: 7.51e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   5 DKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIRK 84
Cdd:PRK14837    2 NKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTEN-WNRTDSEIEHLMFLIAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  85 GYTSKLKKMIQKGVSVTILGEIEGLPLTVKK-IVNQIkkTYIKN-ESIKLNIALNYGGKKELVKALKEIVKTGIDIKRIN 162
Cdd:PRK14837   81 YLSSEFNFYKKNNIKIIVSGDIESLSEEVKKsIKDAI--SFTKNfDGLVLNLAINYGGRNEIVRAVKKFLSSGLDLETLN 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1083351772 163 EQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14837  159 ENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFGR 230
PRK14829 PRK14829
undecaprenyl pyrophosphate synthase; Provisional
 2-233 6.99e-53

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237826  Cd Length: 243  Bit Score: 170.73  E-value: 6.99e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   2 PKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREVLGLFNL 81
Cdd:PRK14829    7 PDIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWK-RSPDEVRFLMGF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  82 IRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTG----ID 157
Cdd:PRK14829   86 SRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVrdgkIS 165

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083351772 158 IKRINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:PRK14829  166 GDRVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFG 241
PRK14827 PRK14827
undecaprenyl pyrophosphate synthase; Provisional
 2-234 3.17e-51

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173288  Cd Length: 296  Bit Score: 168.21  E-value: 3.17e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   2 PKSDKENIPSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNL 81
Cdd:PRK14827   60 PRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTEN-WKRSPEEVRFLMGF 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  82 IRKGYTSKLKKMIQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKELVKALKEIVKTGIDIK-- 159
Cdd:PRK14827  139 NRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRln 218

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1083351772 160 --RINEQLIEKHLYTNGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFGK 234
Cdd:PRK14827  219 peRITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRRFGS 295
PRK10240 PRK10240
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;
17-233 1.06e-48

(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;


Pssm-ID: 182326  Cd Length: 229  Bit Score: 159.76  E-value: 1.06e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  17 MDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENiQERAKREVLGLFNLIRKGYTSKLKKMIQK 96
Cdd:PRK10240    1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSEN-WNRPAQEVSALMELFVWALDSEVKSLHRH 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  97 GVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKEL---VKALKEIVKTG-IDIKRINEQLIEKHLYT 172
Cdd:PRK10240   80 NVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIvqgVRQLAEQVQQGnLQPDQIDEEMLNQHICM 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1083351772 173 NGQPDPELLIRTGGRSRLSNFLLWQTAYSEFYFTTVLWPDFDKKELKKAIDWYQAQKRNFG 233
Cdd:PRK10240  160 HELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFG 220
PTZ00349 PTZ00349
dehydrodolichyl diphosphate synthetase; Provisional
 5-214 1.61e-19

dehydrodolichyl diphosphate synthetase; Provisional


Pssm-ID: 185571  Cd Length: 322  Bit Score: 85.43  E-value: 1.61e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772   5 DKENIpSHIAIIMDGNRRWARFHDLPDIKGHEKGAETLEKVVEAAEKLGVKTVTVYALSTENIQeRAKREV-----LGLF 79
Cdd:PTZ00349   16 DFINI-KHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYN-RSPEEIhflfyLNLL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772  80 NLIRKGYTSKLKKmiQKGVSVTILGEIEGLPLTVKKIVNQIKKTYIKNESIKLNIALNYGGKKEL-------------VK 146
Cdd:PTZ00349   94 ILINEDFFFKFIK--DNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMslckfnpnlyfdtYK 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083351772 147 ALKE--------------IVKTGIDIK----------------------------------RINEQLIE-----KHLYTN 173
Cdd:PTZ00349  172 NLLEekkilcgsniltdpIKEGTFAIPddedecdyldheleneridldlkfdgdcicgeksFLNEEQIEivnyhKKLLTS 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1083351772 174 GQPDPELLIRTGGRSRLSNFLLWQ-TAYSEFYFTTVLWPDFD 214
Cdd:PTZ00349  252 DLPPPNILIRTSGEKRLSDFMLYQiSEFTEIYFINEYWPIFN 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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