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Conserved domains on  [gi|1082992905|gb|OGC96660|]
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MAG: hypothetical protein A2W25_08645 [candidate division Zixibacteria bacterium RBG_16_53_22]

Protein Classification

nuclear transport factor 2-like protein( domain architecture ID 1904797)

nuclear transport factor 2 (NTF2)-like protein such as the isomerase NsrQ from Aspergillus novofumigatus, a key enzyme in the biosynthesis of fungal tetrahydroxanthones, or the Streptomyces [4+2] and [4+6] Cyclase StmD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WI12 super family cl42057
Wound-induced protein WI12; This family consists of several plant wound-induced protein ...
 2-57 4.50e-03

Wound-induced protein WI12; This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum. Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development. This family seems partly related to the NTF2-like superfamily.


The actual alignment was detected with superfamily member COG3631:

Pssm-ID: 477929  Cd Length: 126  Bit Score: 34.13  E-value: 4.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1082992905   2 SARELLKQYvflhnY-GIENGDFEPLMRVFDDKIVFAF-EDSRIGVFEGIEDVRRVFR 57
Cdd:COG3631     1 TNRELVRRF-----YaAFNAGDVDALLALLAEDVVWEDpGGPGAGTYRGKEAVRAFFA 53
 
Name Accession Description Interval E-value
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
2-57 4.50e-03

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 34.13  E-value: 4.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1082992905   2 SARELLKQYvflhnY-GIENGDFEPLMRVFDDKIVFAF-EDSRIGVFEGIEDVRRVFR 57
Cdd:COG3631     1 TNRELVRRF-----YaAFNAGDVDALLALLAEDVVWEDpGGPGAGTYRGKEAVRAFFA 53
 
Name Accession Description Interval E-value
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
2-57 4.50e-03

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 34.13  E-value: 4.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1082992905   2 SARELLKQYvflhnY-GIENGDFEPLMRVFDDKIVFAF-EDSRIGVFEGIEDVRRVFR 57
Cdd:COG3631     1 TNRELVRRF-----YaAFNAGDVDALLALLAEDVVWEDpGGPGAGTYRGKEAVRAFFA 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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