View
Concise Results
Standard Results
Full Results
choline transporter [Staphylococcus sp. HMSC14D10]
Protein Classification
BCCT family transporter ( domain architecture ID 10003438 )
BCCT (betaine-carnitine-choline transporter) family transporter shares the common functional feature of transporting molecules with a quaternary ammonium group [R-N+(CH3)3]; energized by pmf-driven proton symport; similar to Bacillus subtilis glycine betaine transporter OpuD
List of domain hits
Name
Accession
Description
Interval
E-value
BetT
COG1292 Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
1-505
0e+00
Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440903
Cd Length: 512
Bit Score: 657.22
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 1 M NSSSE E TKQN K KFSS VFI Y SA IVVAIV VL I G AFL PE QF G KITGDIS SWIT EKL GW Y YL I L TTVI V F FC IF L I FS PI GK L 80
Cdd:COG1292 1 M SDKNK E KFKK K IDPP VFI P SA LLILAF VL W G LLF PE AA G AVLNAAF SWIT TNF GW F YL L L VLLF V V FC LY L A FS KY GK I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 81 K LG KPND KPEF N T V SWFAMLFSAGMGIGLVF Y G A AEP MA HF A SPP - NAD P KTT EA YTE A LRS TFFHWG F HAWA V Y GV V A L 159
Cdd:COG1292 81 R LG GDDA KPEF S T F SWFAMLFSAGMGIGLVF W G V AEP LY HF L SPP p GVE P GSP EA ARW A MAY TFFHWG L HAWA I Y AL V G L 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 160 ALAY AQF R KNE P GL IS RT L R P I LGD KVE GPIG TI ID V L S VFATV V GVA V SLG M GALQIN G GL H YLFG V PN NVW VQ S III G 239
Cdd:COG1292 161 ALAY FAY R RGL P LT IS SA L Y P L LGD RIY GPIG KV ID I L A VFATV F GVA T SLG L GALQIN A GL N YLFG I PN SLT VQ I III A 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 240 V V T I LF IA SA W SGL S KGI QY LSNLN IG L GTV L MIIA LI I GPT VL ILN M F TS S T G SL L NT F LFN S FD T A A LNG qk RE W MSS 319
Cdd:COG1292 241 V I T A LF TI SA V SGL D KGI KR LSNLN MV L ALL L LLFV LI V GPT LF ILN L F VQ S L G DY L QN F VPM S LW T D A YGD -- TG W LGG 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 320 WT LY YW G WW LS W S PFVG V FIAR V S K GR S IREF IS GVLLVP AIVS FLWFSVFG VLG I ETGKKHP ---- E LFKMTP E TQ LF G 395
Cdd:COG1292 319 WT VF YW A WW IA W A PFVG L FIAR I S R GR T IREF VL GVLLVP TLFT FLWFSVFG GTA I HLELNGG gdla E AVAAGV E AA LF A 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 396 VFHHV PLG MA LS LI A LV L IAS FF I TSADS ATF VL G M Q T TF G SL EP S R AVKVT WGV SQS L I A FI LLLAGG gngada L N A I Q 475
Cdd:COG1292 399 LLEQL PLG TI LS VL A II L VII FF V TSADS GSL VL A M L T SG G DE EP P R WQRIF WGV LIG L V A AV LLLAGG ------ L S A L Q 472
490 500 510
....*....|....*....|....*....|
gi 1081394524 476 S A A II S A F PFSFV VIM M MI S FY K DANQERK 505
Cdd:COG1292 473 T A S II T A L PFSFV LLL M CV S LV K ALREDPR 502
Name
Accession
Description
Interval
E-value
BetT
COG1292 Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
1-505
0e+00
Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440903
Cd Length: 512
Bit Score: 657.22
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 1 M NSSSE E TKQN K KFSS VFI Y SA IVVAIV VL I G AFL PE QF G KITGDIS SWIT EKL GW Y YL I L TTVI V F FC IF L I FS PI GK L 80
Cdd:COG1292 1 M SDKNK E KFKK K IDPP VFI P SA LLILAF VL W G LLF PE AA G AVLNAAF SWIT TNF GW F YL L L VLLF V V FC LY L A FS KY GK I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 81 K LG KPND KPEF N T V SWFAMLFSAGMGIGLVF Y G A AEP MA HF A SPP - NAD P KTT EA YTE A LRS TFFHWG F HAWA V Y GV V A L 159
Cdd:COG1292 81 R LG GDDA KPEF S T F SWFAMLFSAGMGIGLVF W G V AEP LY HF L SPP p GVE P GSP EA ARW A MAY TFFHWG L HAWA I Y AL V G L 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 160 ALAY AQF R KNE P GL IS RT L R P I LGD KVE GPIG TI ID V L S VFATV V GVA V SLG M GALQIN G GL H YLFG V PN NVW VQ S III G 239
Cdd:COG1292 161 ALAY FAY R RGL P LT IS SA L Y P L LGD RIY GPIG KV ID I L A VFATV F GVA T SLG L GALQIN A GL N YLFG I PN SLT VQ I III A 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 240 V V T I LF IA SA W SGL S KGI QY LSNLN IG L GTV L MIIA LI I GPT VL ILN M F TS S T G SL L NT F LFN S FD T A A LNG qk RE W MSS 319
Cdd:COG1292 241 V I T A LF TI SA V SGL D KGI KR LSNLN MV L ALL L LLFV LI V GPT LF ILN L F VQ S L G DY L QN F VPM S LW T D A YGD -- TG W LGG 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 320 WT LY YW G WW LS W S PFVG V FIAR V S K GR S IREF IS GVLLVP AIVS FLWFSVFG VLG I ETGKKHP ---- E LFKMTP E TQ LF G 395
Cdd:COG1292 319 WT VF YW A WW IA W A PFVG L FIAR I S R GR T IREF VL GVLLVP TLFT FLWFSVFG GTA I HLELNGG gdla E AVAAGV E AA LF A 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 396 VFHHV PLG MA LS LI A LV L IAS FF I TSADS ATF VL G M Q T TF G SL EP S R AVKVT WGV SQS L I A FI LLLAGG gngada L N A I Q 475
Cdd:COG1292 399 LLEQL PLG TI LS VL A II L VII FF V TSADS GSL VL A M L T SG G DE EP P R WQRIF WGV LIG L V A AV LLLAGG ------ L S A L Q 472
490 500 510
....*....|....*....|....*....|
gi 1081394524 476 S A A II S A F PFSFV VIM M MI S FY K DANQERK 505
Cdd:COG1292 473 T A S II T A L PFSFV LLL M CV S LV K ALREDPR 502
BCCT
pfam02028 BCCT, betaine/carnitine/choline family transporter;
17-503
0e+00
BCCT, betaine/carnitine/choline family transporter;
Pssm-ID: 460420
Cd Length: 485
Bit Score: 616.86
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 17 VF IY SA IVVAIV VL I G AFL PE QFGKITGDISS WIT EKL GW Y YL I L TTVIVF F CI FL I FS PI G KLK LG KPN DKPEF N T V SW 96
Cdd:pfam02028 1 VF AV SA GLILAF VL L G LIF PE ALSAVVNTALD WIT DNF GW F YL L L VLIFLV F AL FL A FS RY G NIR LG GDD DKPEF S T F SW 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 97 FAMLF S AGMGIGLVF Y G A AEP MA H FA S - PP NAD P K T T EA YTE A LRS TFFHWG F HAWA V Y GV VALALAY AQF RK NE P G LIS 175
Cdd:pfam02028 81 FAMLF A AGMGIGLVF W G V AEP LS H YL S p PP GGE P G T P EA AQQ A MAY TFFHWG L HAWA I Y AL VALALAY FAY RK GL P L LIS 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 176 RT L R P I LGD KVE GPIG TI ID V L SVF ATV V GVA V SLG M GALQIN G GL H YLFG V PN NVWV Q SI II GVV T I LF IA SA W SGL S K 255
Cdd:pfam02028 161 SA L Y P L LGD RID GPIG KA ID I L AII ATV F GVA T SLG L GALQIN A GL S YLFG I PN TLTT Q LA II AII T A LF TI SA V SGL D K 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 256 GI QY LSNLN IG L GTV L MIIA LI I GPT VL ILN M F TS S T G SL L NT F LFN SF D T AAL n G QKRE W MSS WT LY YW G WW LS W S PFV 335
Cdd:pfam02028 241 GI KR LSNLN MY L AVA L LLFV LI A GPT LF ILN T F VQ S L G DY L QN F VPM SF Y T DPF - G DTGG W LGG WT IF YW A WW IA W A PFV 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 336 G V FIAR V S K GR S IREFI S GVLLVP AIVS FLWFSVFG VLG I ETGKKH P ---- ELFKMT P ETQ LF GVFHHV PLG MA LS LI AL 411
Cdd:pfam02028 320 G M FIAR I S R GR T IREFI L GVLLVP TLFT FLWFSVFG GTA I YLELNG P gdla DAVEAG P PAA LF ALLEQL PLG TI LS VL AL 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 412 V LI AS FF I TSADS A T F V LG M QTTF G S L E P S R AVK V T WGV SQSLI A FI LLLAGG gngada L N A I QSA A II S A F PFSF VVIM 491
Cdd:pfam02028 400 L LI II FF V TSADS G T L V IA M LSSG G D L N P P R WQR V F WGV LLGAV A AV LLLAGG ------ L E A L QSA S II A A L PFSF ILLL 473
490
....*....|..
gi 1081394524 492 M M IS FY K DANQ E 503
Cdd:pfam02028 474 M C IS LF K ALRE E 485
bcct
TIGR00842 choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family ...
55-503
9.97e-166
choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family (TC 2.A.15) Proteins of the BCCT family share the common functional feature of transporting molecules with a quaternary ammonium group [R-N+(CH3)3]. The BCCT family includes transporters for carnitine, choline and glycine betaine. BCCT transporters have 12 putative TMS, and are energized by pmf-driven proton symport. Some of these permeases exhibit osmosensory and osmoregulatory properties inherent to their polypeptide chains. [Transport and binding proteins, Other]
Pssm-ID: 213565
Cd Length: 452
Bit Score: 478.00
E-value: 9.97e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 55 GW Y Y LILT T VIVF F CIFLI FS PI GK LK LG KPND KPEF N T V SW F AMLF S AGMG I GL V F Y G A AEP MAHFAS PP - N A D P KT T E 133
Cdd:TIGR00842 1 GW A Y ILTV T LFLG F VLYIA FS RY GK IR LG RDDE KPEF S T L SW L AMLF A AGMG A GL M F W G V AEP LTYYLT PP f G A G P TS T T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 134 A YTE AL RS T F FHWG F H A WA V Y GV V A LALAY AQ FRK NE P GLI S RT L R P I LG D KV E GPIG TI ID V L SVF ATV V GVA V SLG M G 213
Cdd:TIGR00842 81 A QEQ AL AY T L FHWG I H P WA I Y AL V G LALAY FH FRK GL P LRL S SA L V P L LG E KV N GPIG KA ID I L ALV ATV F GVA T SLG L G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 214 A L QIN G GL HY LFG V P NNV W V Q SI II GV VT I L FIA S AW SG LS KGI QY LSN L N IG L GTV L MIIA LI I GPTV LI LN M F TS S T G 293
Cdd:TIGR00842 161 A P QIN A GL SA LFG I P DSF W L Q AL II LC VT A L ACI S VA SG VG KGI KI LSN I N MA L AFL L LLFV LI V GPTV FL LN S F VD S I G 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 294 SL L NT F LFN SF D T AALN G q K RE W MSS WT LY YW G WW L SWSPFVG V FIAR V S K GR S IREFI S GVLL V P AIVSF LWFSVFG VL 373
Cdd:TIGR00842 241 NY L QN F PQM SF R T DPDD G - K GG W PGG WT VF YW A WW I SWSPFVG M FIAR I S R GR T IREFI F GVLL G P TAFTW LWFSVFG NS 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 374 GIETGKKH ----- P ELFKMTPETQ LFG VFHHV PLG MALSLI AL V LI AS FFITSADSA TF VL G - MQTTF G S L -- EP SRA V K 445
Cdd:TIGR00842 320 ALLLQQNG gfing P FVVETNGARA LFG LLAAL PLG TITMAL AL I LI II FFITSADSA SL VL A n TTSRG G Q L ge EP PKW V R 399
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1081394524 446 V T W G V SQS LIA FI LL LA GG gngad A L N A I Q SAA II S A F PFSFV VIMM M I S FY KD AN Q E 503
Cdd:TIGR00842 400 V F W A V AIG LIA LV LL FS GG ----- S L A A L Q TTT II A A L PFSFV MLVV M F S LI KD LK Q D 452
PRK09928
PRK09928 choline transport protein BetT; Provisional
1-498
1.08e-126
choline transport protein BetT; Provisional
Pssm-ID: 236635
Cd Length: 679
Bit Score: 385.97
E-value: 1.08e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 1 M NSS S EETKQNKKFSS VF IY SA IVVAIVV L IGAFLPEQFGKITGDISS W ITEKL GWYYL ILT T VIVF F C IF LIF S PI G KL 80
Cdd:PRK09928 3 M TDL S HKREKDRINPV VF YT SA GLILLFS L TTILFTDFSNRWINRTLN W VSKTF GWYYL LAA T LYIV F V IF IAC S RF G SI 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 81 KLG KPND KPEF NTV SW F AMLF S AG M GI G L V F YGA AEP MAHFAS PP NADPK T T EA YTE A LRS T F FH W G FHA W AV Y GVVAL A 160
Cdd:PRK09928 83 KLG PEQS KPEF SLL SW A AMLF A AG I GI D L M F FSV AEP VTQYMQ PP EGAGQ T I EA ARQ A MVW T L FH Y G LTG W SM Y ALMGM A 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 161 L A Y AQF R K N E P GL I SRT L R PI L G DKVE GPIG TII D VLS V FA T VV G V A VS LG M G AL Q I N G GL HY LF GV P NNVWV Q SII I GV 240
Cdd:PRK09928 163 L G Y FSY R Y N L P LT I RSA L Y PI F G KRIN GPIG HSV D IAA V IG T IF G I A TT LG I G VV Q L N Y GL SV LF DI P ESLAA Q AAL I AL 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 241 VT I LFIA S AW SG LS KGI QY LS N LN IG L GTV L MIIA L II G P T VLI LN MFTSST G SLL N T F LFNSFDTA A LN g QKR EWM SS W 320
Cdd:PRK09928 243 SV I IATI S VT SG VN KGI RV LS E LN VL L ALG L ILFV L FM G D T SFL LN ALVLNV G DYV N R F MGMTLNSF A FD - RPT EWM NN W 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 321 TL YY W G WW LS WSPFVG V F I AR V S K GR S IR E F IS G V L LV P AIVSF LW F S V FG ---- VLG I ETGKKHP E LFKMT PE TQLFGV 396
Cdd:PRK09928 322 TL FF W A WW VA WSPFVG L F L AR I S R GR T IR Q F VL G T L II P FTFTL LW L S I FG nsal YEI I HGNAAFA E EAMAH PE RGFYSL 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 397 FHHV P LGMALSLI A LVLIAS F FI TSADS ATF VLG MQ T TFGSLEP S R A --- VK V T W G V SQS L IAFIL L LAG G gngada LN A 473
Cdd:PRK09928 402 LAQY P AFTFSASV A TITGLL F YV TSADS GAL VLG NF T SKLKDIN S D A pnw LR V F W S V AIG L LTLGM L MTN G ------ IS A 475
490 500
....*....|....*....|....*
gi 1081394524 474 I Q SAAI I SAF PFSFV VIMM M ISF YK 498
Cdd:PRK09928 476 L Q NTTV I MGL PFSFV IFFV M AGL YK 500
Name
Accession
Description
Interval
E-value
BetT
COG1292 Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
1-505
0e+00
Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440903
Cd Length: 512
Bit Score: 657.22
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 1 M NSSSE E TKQN K KFSS VFI Y SA IVVAIV VL I G AFL PE QF G KITGDIS SWIT EKL GW Y YL I L TTVI V F FC IF L I FS PI GK L 80
Cdd:COG1292 1 M SDKNK E KFKK K IDPP VFI P SA LLILAF VL W G LLF PE AA G AVLNAAF SWIT TNF GW F YL L L VLLF V V FC LY L A FS KY GK I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 81 K LG KPND KPEF N T V SWFAMLFSAGMGIGLVF Y G A AEP MA HF A SPP - NAD P KTT EA YTE A LRS TFFHWG F HAWA V Y GV V A L 159
Cdd:COG1292 81 R LG GDDA KPEF S T F SWFAMLFSAGMGIGLVF W G V AEP LY HF L SPP p GVE P GSP EA ARW A MAY TFFHWG L HAWA I Y AL V G L 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 160 ALAY AQF R KNE P GL IS RT L R P I LGD KVE GPIG TI ID V L S VFATV V GVA V SLG M GALQIN G GL H YLFG V PN NVW VQ S III G 239
Cdd:COG1292 161 ALAY FAY R RGL P LT IS SA L Y P L LGD RIY GPIG KV ID I L A VFATV F GVA T SLG L GALQIN A GL N YLFG I PN SLT VQ I III A 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 240 V V T I LF IA SA W SGL S KGI QY LSNLN IG L GTV L MIIA LI I GPT VL ILN M F TS S T G SL L NT F LFN S FD T A A LNG qk RE W MSS 319
Cdd:COG1292 241 V I T A LF TI SA V SGL D KGI KR LSNLN MV L ALL L LLFV LI V GPT LF ILN L F VQ S L G DY L QN F VPM S LW T D A YGD -- TG W LGG 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 320 WT LY YW G WW LS W S PFVG V FIAR V S K GR S IREF IS GVLLVP AIVS FLWFSVFG VLG I ETGKKHP ---- E LFKMTP E TQ LF G 395
Cdd:COG1292 319 WT VF YW A WW IA W A PFVG L FIAR I S R GR T IREF VL GVLLVP TLFT FLWFSVFG GTA I HLELNGG gdla E AVAAGV E AA LF A 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 396 VFHHV PLG MA LS LI A LV L IAS FF I TSADS ATF VL G M Q T TF G SL EP S R AVKVT WGV SQS L I A FI LLLAGG gngada L N A I Q 475
Cdd:COG1292 399 LLEQL PLG TI LS VL A II L VII FF V TSADS GSL VL A M L T SG G DE EP P R WQRIF WGV LIG L V A AV LLLAGG ------ L S A L Q 472
490 500 510
....*....|....*....|....*....|
gi 1081394524 476 S A A II S A F PFSFV VIM M MI S FY K DANQERK 505
Cdd:COG1292 473 T A S II T A L PFSFV LLL M CV S LV K ALREDPR 502
BCCT
pfam02028 BCCT, betaine/carnitine/choline family transporter;
17-503
0e+00
BCCT, betaine/carnitine/choline family transporter;
Pssm-ID: 460420
Cd Length: 485
Bit Score: 616.86
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 17 VF IY SA IVVAIV VL I G AFL PE QFGKITGDISS WIT EKL GW Y YL I L TTVIVF F CI FL I FS PI G KLK LG KPN DKPEF N T V SW 96
Cdd:pfam02028 1 VF AV SA GLILAF VL L G LIF PE ALSAVVNTALD WIT DNF GW F YL L L VLIFLV F AL FL A FS RY G NIR LG GDD DKPEF S T F SW 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 97 FAMLF S AGMGIGLVF Y G A AEP MA H FA S - PP NAD P K T T EA YTE A LRS TFFHWG F HAWA V Y GV VALALAY AQF RK NE P G LIS 175
Cdd:pfam02028 81 FAMLF A AGMGIGLVF W G V AEP LS H YL S p PP GGE P G T P EA AQQ A MAY TFFHWG L HAWA I Y AL VALALAY FAY RK GL P L LIS 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 176 RT L R P I LGD KVE GPIG TI ID V L SVF ATV V GVA V SLG M GALQIN G GL H YLFG V PN NVWV Q SI II GVV T I LF IA SA W SGL S K 255
Cdd:pfam02028 161 SA L Y P L LGD RID GPIG KA ID I L AII ATV F GVA T SLG L GALQIN A GL S YLFG I PN TLTT Q LA II AII T A LF TI SA V SGL D K 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 256 GI QY LSNLN IG L GTV L MIIA LI I GPT VL ILN M F TS S T G SL L NT F LFN SF D T AAL n G QKRE W MSS WT LY YW G WW LS W S PFV 335
Cdd:pfam02028 241 GI KR LSNLN MY L AVA L LLFV LI A GPT LF ILN T F VQ S L G DY L QN F VPM SF Y T DPF - G DTGG W LGG WT IF YW A WW IA W A PFV 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 336 G V FIAR V S K GR S IREFI S GVLLVP AIVS FLWFSVFG VLG I ETGKKH P ---- ELFKMT P ETQ LF GVFHHV PLG MA LS LI AL 411
Cdd:pfam02028 320 G M FIAR I S R GR T IREFI L GVLLVP TLFT FLWFSVFG GTA I YLELNG P gdla DAVEAG P PAA LF ALLEQL PLG TI LS VL AL 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 412 V LI AS FF I TSADS A T F V LG M QTTF G S L E P S R AVK V T WGV SQSLI A FI LLLAGG gngada L N A I QSA A II S A F PFSF VVIM 491
Cdd:pfam02028 400 L LI II FF V TSADS G T L V IA M LSSG G D L N P P R WQR V F WGV LLGAV A AV LLLAGG ------ L E A L QSA S II A A L PFSF ILLL 473
490
....*....|..
gi 1081394524 492 M M IS FY K DANQ E 503
Cdd:pfam02028 474 M C IS LF K ALRE E 485
bcct
TIGR00842 choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family ...
55-503
9.97e-166
choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family (TC 2.A.15) Proteins of the BCCT family share the common functional feature of transporting molecules with a quaternary ammonium group [R-N+(CH3)3]. The BCCT family includes transporters for carnitine, choline and glycine betaine. BCCT transporters have 12 putative TMS, and are energized by pmf-driven proton symport. Some of these permeases exhibit osmosensory and osmoregulatory properties inherent to their polypeptide chains. [Transport and binding proteins, Other]
Pssm-ID: 213565
Cd Length: 452
Bit Score: 478.00
E-value: 9.97e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 55 GW Y Y LILT T VIVF F CIFLI FS PI GK LK LG KPND KPEF N T V SW F AMLF S AGMG I GL V F Y G A AEP MAHFAS PP - N A D P KT T E 133
Cdd:TIGR00842 1 GW A Y ILTV T LFLG F VLYIA FS RY GK IR LG RDDE KPEF S T L SW L AMLF A AGMG A GL M F W G V AEP LTYYLT PP f G A G P TS T T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 134 A YTE AL RS T F FHWG F H A WA V Y GV V A LALAY AQ FRK NE P GLI S RT L R P I LG D KV E GPIG TI ID V L SVF ATV V GVA V SLG M G 213
Cdd:TIGR00842 81 A QEQ AL AY T L FHWG I H P WA I Y AL V G LALAY FH FRK GL P LRL S SA L V P L LG E KV N GPIG KA ID I L ALV ATV F GVA T SLG L G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 214 A L QIN G GL HY LFG V P NNV W V Q SI II GV VT I L FIA S AW SG LS KGI QY LSN L N IG L GTV L MIIA LI I GPTV LI LN M F TS S T G 293
Cdd:TIGR00842 161 A P QIN A GL SA LFG I P DSF W L Q AL II LC VT A L ACI S VA SG VG KGI KI LSN I N MA L AFL L LLFV LI V GPTV FL LN S F VD S I G 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 294 SL L NT F LFN SF D T AALN G q K RE W MSS WT LY YW G WW L SWSPFVG V FIAR V S K GR S IREFI S GVLL V P AIVSF LWFSVFG VL 373
Cdd:TIGR00842 241 NY L QN F PQM SF R T DPDD G - K GG W PGG WT VF YW A WW I SWSPFVG M FIAR I S R GR T IREFI F GVLL G P TAFTW LWFSVFG NS 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 374 GIETGKKH ----- P ELFKMTPETQ LFG VFHHV PLG MALSLI AL V LI AS FFITSADSA TF VL G - MQTTF G S L -- EP SRA V K 445
Cdd:TIGR00842 320 ALLLQQNG gfing P FVVETNGARA LFG LLAAL PLG TITMAL AL I LI II FFITSADSA SL VL A n TTSRG G Q L ge EP PKW V R 399
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1081394524 446 V T W G V SQS LIA FI LL LA GG gngad A L N A I Q SAA II S A F PFSFV VIMM M I S FY KD AN Q E 503
Cdd:TIGR00842 400 V F W A V AIG LIA LV LL FS GG ----- S L A A L Q TTT II A A L PFSFV MLVV M F S LI KD LK Q D 452
PRK09928
PRK09928 choline transport protein BetT; Provisional
1-498
1.08e-126
choline transport protein BetT; Provisional
Pssm-ID: 236635
Cd Length: 679
Bit Score: 385.97
E-value: 1.08e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 1 M NSS S EETKQNKKFSS VF IY SA IVVAIVV L IGAFLPEQFGKITGDISS W ITEKL GWYYL ILT T VIVF F C IF LIF S PI G KL 80
Cdd:PRK09928 3 M TDL S HKREKDRINPV VF YT SA GLILLFS L TTILFTDFSNRWINRTLN W VSKTF GWYYL LAA T LYIV F V IF IAC S RF G SI 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 81 KLG KPND KPEF NTV SW F AMLF S AG M GI G L V F YGA AEP MAHFAS PP NADPK T T EA YTE A LRS T F FH W G FHA W AV Y GVVAL A 160
Cdd:PRK09928 83 KLG PEQS KPEF SLL SW A AMLF A AG I GI D L M F FSV AEP VTQYMQ PP EGAGQ T I EA ARQ A MVW T L FH Y G LTG W SM Y ALMGM A 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 161 L A Y AQF R K N E P GL I SRT L R PI L G DKVE GPIG TII D VLS V FA T VV G V A VS LG M G AL Q I N G GL HY LF GV P NNVWV Q SII I GV 240
Cdd:PRK09928 163 L G Y FSY R Y N L P LT I RSA L Y PI F G KRIN GPIG HSV D IAA V IG T IF G I A TT LG I G VV Q L N Y GL SV LF DI P ESLAA Q AAL I AL 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 241 VT I LFIA S AW SG LS KGI QY LS N LN IG L GTV L MIIA L II G P T VLI LN MFTSST G SLL N T F LFNSFDTA A LN g QKR EWM SS W 320
Cdd:PRK09928 243 SV I IATI S VT SG VN KGI RV LS E LN VL L ALG L ILFV L FM G D T SFL LN ALVLNV G DYV N R F MGMTLNSF A FD - RPT EWM NN W 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 321 TL YY W G WW LS WSPFVG V F I AR V S K GR S IR E F IS G V L LV P AIVSF LW F S V FG ---- VLG I ETGKKHP E LFKMT PE TQLFGV 396
Cdd:PRK09928 322 TL FF W A WW VA WSPFVG L F L AR I S R GR T IR Q F VL G T L II P FTFTL LW L S I FG nsal YEI I HGNAAFA E EAMAH PE RGFYSL 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 397 FHHV P LGMALSLI A LVLIAS F FI TSADS ATF VLG MQ T TFGSLEP S R A --- VK V T W G V SQS L IAFIL L LAG G gngada LN A 473
Cdd:PRK09928 402 LAQY P AFTFSASV A TITGLL F YV TSADS GAL VLG NF T SKLKDIN S D A pnw LR V F W S V AIG L LTLGM L MTN G ------ IS A 475
490 500
....*....|....*....|....*
gi 1081394524 474 I Q SAAI I SAF PFSFV VIMM M ISF YK 498
Cdd:PRK09928 476 L Q NTTV I MGL PFSFV IFFV M AGL YK 500
PRK03356
PRK03356 L-carnitine/gamma-butyrobetaine antiport BCCT transporter;
1-500
3.23e-72
L-carnitine/gamma-butyrobetaine antiport BCCT transporter;
Pssm-ID: 179568
Cd Length: 504
Bit Score: 238.87
E-value: 3.23e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 1 M NSSSEE T KQNK K fss VF IYSA I V V A I VVLIGAFLPEQFGKITGDIS S WI T EKL GW --- Y Y LILTTVIV F F cif L I F S P I 77
Cdd:PRK03356 1 M KNEKKK T GIEP K --- VF FPPL I I V G I LCWLTVRDLDAANVVINAVF S YV T NVW GW afe W Y MVVMLFGW F W --- L V F G P Y 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 78 G K LK LG kp ND KPEF N T V SW FA M L F SAGMGIGLV F Y G AA E PMAHFAS PP - NAD P KT T E A YTEA L RSTF FHWG FHA WA V Y GV 156
Cdd:PRK03356 75 A K KR LG -- DE KPEF S T A SW IF M M F ASCTSAAVL F W G SI E IYYYIST PP f GLE P NS T G A KELG L AYSL FHWG PLP WA T Y SF 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 157 VAL A LA Y AQ F - RK NEPGLI S R TL R P IL G D K - VE G PI GTI I D VLSVF A TVVGVAV SLG MGALQINGGLHY LFG V P NNVWVQ 234
Cdd:PRK03356 153 LSV A FG Y FF F v RK MDVIRP S S TL V P LV G E K h AK G LF GTI V D NFYLV A LIFAMGT SLG LATPLVTECMQW LFG I P HTLQLD 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 235 S III GVVT IL FIASAWS GL S KG IQYL S NLNIG L GTVLMIIAL I I G P T VL I L N M FT S S T G S LL NTFLFNS F D T AALN gq K R 314
Cdd:PRK03356 233 A III TCWI IL NAICVAC GL Q KG VRIA S DVRSY L SFLMLGWVF I V G G T SF I M N Y FT D S V G M LL MYLPRML F Y T DPIG -- K G 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 315 EWMSS WT LY YW G WW LSWSPFVGV F I AR V S K GR SI RE FIS G VL L vp AIVSFL W F s VFG VLG IE T GKKHPE - LFKMTPETQL 393
Cdd:PRK03356 311 GFPQG WT VF YW A WW VIYAIQMSI F L AR I S R GR TV RE LCF G MV L -- GLTAST W I - LWT VLG SN T LLLMDK n IINIPNLIEQ 387
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 394 F GV FHHVPLGM A LSLIALVLIAS FFI ------- T SADSATFV L G M Q T TFGSL --- EP SRA V KVT W GVSQSL I AFI LL LA G 463
Cdd:PRK03356 388 Y GV ARAIIETW A ALPLSTATMWG FFI lcfiatv T LINACSYT L A M S T CREVR dge EP PLL V RIG W SILVGI I GIV LL AL G 467
490 500 510
....*....|....*....|....*....|....*..
gi 1081394524 464 G gngada L NA IQ S A A I ISAF P FS FV V IM MMI SF Y KDA 500
Cdd:PRK03356 468 G ------ L KP IQ T A I I AGGC P LF FV N IM VTL SF I KDA 498
PRK09950
PRK09950 putative transporter; Provisional
11-503
1.20e-70
putative transporter; Provisional
Pssm-ID: 236636
Cd Length: 506
Bit Score: 235.07
E-value: 1.20e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 11 NKK FSSVFI -- Y S AIV V AIV V LIGAFL P E Q FGKITGD I SS W I T EKL G WYYLILTTVIVFFCIF L IF S PI G KLK LG K pn D K 88
Cdd:PRK09950 4 NKK KKDKPL is T S LLA V FFI V AALSLF P Q Q SAAAANT I FQ W V T RTF G SPVQLFVLLAMILVLY L AT S KY G NIR LG E -- G K 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 89 PE FN T V SW FA M LFS AG M G IGLVFY G AA E PMAHFAS P P - N AD P KTTE A YTEALRST FFHWG FH AWA V Y GVVA L AL AY A - QF 166
Cdd:PRK09950 82 PE YS T L SW LF M FIC AG L G SSTLYW G VM E WAYYYQT P G l N IA P RSPK A LEYSVSYS FFHWG IS AWA T Y ALAS L IM AY H f HV 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 167 RKN EPGLI S RTLRP I L G D K VE GP I G TII D VLSVF ATV VGVAV SL GMG A LQING GL HY L F G V PNN VW VQ SII I GVVTIL F I 246
Cdd:PRK09950 162 RKN KGLSL S GIIAA I T G V K PQ GP W G RLV D LMFLI ATV GALTI SL VVT A ATFTR GL SA L T G L PNN FT VQ AFV I LLSGVI F C 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 247 A S AWS G LSK G I Q Y LS NLNIGLGTVLMIIA LI I GPT VL I L N MFTS S T G SLLNT FL FN S FD T AALNGQK re WMSS WT LY YW G 326
Cdd:PRK09950 242 L S SYI G IDN G L Q R LS KMVGWGAFLFALLV LI V GPT EF I T N NIIN S I G LTTQN FL QM S LF T DPMGDGS -- FTRN WT VF YW L 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 327 WW L S WS P F V GV F IA RVS K GR S I R E F I S G VL L VPAI vs FL WF s V FGVL G ------- I ETGKKH P ELFK - MTP ET QLFGVFH 398
Cdd:PRK09950 320 WW I S YT P G V AM F VT RVS R GR K I K E V I W G LI L GSSV -- GC WF - F FGVL E syaihqf I NGVINV P QILN t LGG ET AVQQLLS 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081394524 399 HV P L G MALSLIA L VLIAS F FITSA D SATFVLGMQT T FGSL E --- P S R AVKVT W G V SQS LI AFIL L LA G G gngad A L NAIQ 475
Cdd:PRK09950 397 SL P A G KLFLAAY L GIMII F LASHM D AVAYTMAATS T RNLR E gdd P D R GLRLF W C V VIT LI PLSI L FT G A ----- S L DTMK 471
490 500
....*....|....*....|....*...
gi 1081394524 476 SAAIIS A F PF SFVVIMMMIS F YKDAN Q E 503
Cdd:PRK09950 472 TTVVLT A L PF LVILLIKVYG F IRWLK Q D 499
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
