|
Name |
Accession |
Description |
Interval |
E-value |
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
72-413 |
4.05e-33 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 128.43 E-value: 4.05e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 72 SRLLDVFYSFYPIVVESLIGRVLAFYLFPILGFNQVM--INTHYWINFIIEVSIYPLYFYFTKFVKIDFYNLQKGVKKNY 149
Cdd:COG3290 2 LLLLLLLLLLLILLILILILLLLLLIILLLILLLVLLllLFLLFVIILLLLLLILLLILLLLLLLLLAALLLKLLEEIAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 150 LSRYFVLMNVSMFFYII-----------------LLQVLVIGE-------GFIPNAVEHREHLVGIYVVIFFVMLIYLNS 205
Cdd:COG3290 82 LVEEREAVLESIREGVIavdrdgritlindaarrLLGLDAIGRpidevlaEVLETGERDEEILLNGRVLVVNRVPIRDDG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 206 TLTEKLELEllyQKNKQLEELSVYSKHVESLYNEIRSFRHDYINVLTSIQEGIELKDIEAIQEVYDNVLSKTKENFSnsk 285
Cdd:COG3290 162 RVVGAVATF---RDRTELERLEEELEGVKELAEALRAQRHDFRNHLHTISGLLQLGEYDEALEYIDEISEELQELID--- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 286 ydfANLSNITNTAIKSVVSAKLLEAQSKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAA--CLAEKPCLTLAIF 363
Cdd:COG3290 236 ---SLLSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLPLSDTDLVTILGNLLDNAIEAVekLPEEERRVELSIR 312
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1081349562 364 QEKDSDIIVVENS---IREEKINisKIFDLGYSSK-GENRGIGLSNVHDILDKY 413
Cdd:COG3290 313 DDGDELVIEVEDSgpgIPEELLE--KIFERGFSTKlGEGRGLGLALVKQIVEKY 364
|
|
| HATPase_AgrC-ComD-like |
cd16935 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
298-433 |
1.10e-22 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.
Pssm-ID: 340412 [Multi-domain] Cd Length: 134 Bit Score: 93.02 E-value: 1.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 298 AIKSVVSAKLLEAQSKNVEVHIEVESLVSLsNMDALDIITILSILLDNAIEAA--CLAEKPCLTLAIFQEKDSDIIVVEN 375
Cdd:cd16935 1 ALDSLLSEKLELAREKGIEFTIEIDIPILL-PISPLDLCIIFGNLLDNAIEACakIDKENRFIHLKIRQKKGFLIISIEN 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1081349562 376 SIREEkinISKIFDLGYSSKGE-NRGIGLSNVHDILDKYpAAFIKTSSRKHLFRQTIEI 433
Cdd:cd16935 80 SYEGE---LKKKNGLFLSTKKDkNHGIGLKSIREIVKKY-NGNLSIEYENGIFTLSILL 134
|
|
| HATPase_c_5 |
pfam14501 |
GHKL domain; This family represents the structurally related ATPase domains of histidine ... |
330-433 |
4.66e-17 |
|
GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 433996 [Multi-domain] Cd Length: 102 Bit Score: 76.10 E-value: 4.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 330 MDALDIITILSILLDNAIEAA-CLAEKPCLTLAIFQEKDSDIIVVENSIREEKINISKIFDlgYSSKGENRGIGLSNVHD 408
Cdd:pfam14501 1 ISDVDLCVIFGNLLDNAIEACsKIDDNRFIRLKIREKQNFLIIRIENTYEGELKFEGKLPS--TKTKGDGHGIGLKSIRR 78
|
90 100
....*....|....*....|....*
gi 1081349562 409 ILDKYPaAFIKTSSRKHLFRQTIEI 433
Cdd:pfam14501 79 IVKKYG-GNLSTEIENGIFTLSILL 102
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
299-404 |
5.25e-09 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 58.00 E-value: 5.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 299 IKSVVSA-----KLLEAQSKNVEVHIEVESLV--SLSNMDALDIITILSILLDNAIEAACLAEKPCLTLAI-FQEKDSDI 370
Cdd:PRK11086 391 IKSPVIAgfllgKISRARELGITLIISEDSQLpdSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLhYRNGWLHC 470
|
90 100 110
....*....|....*....|....*....|....
gi 1081349562 371 IVVENSIREEKINISKIFDLGYSSKGENRGIGLS 404
Cdd:PRK11086 471 EVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLY 504
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
330-413 |
2.00e-07 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 49.18 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 330 MDALDIITILSILLDNAIEAAclAEKPCLTLAIFQEKDSDIIVVENS---IREEKINisKIFDLGYSSKGENR-----GI 401
Cdd:smart00387 1 GDPDRLRQVLSNLLDNAIKYT--PEGGRITVTLERDGDHVEITVEDNgpgIPPEDLE--KIFEPFFRTDKRSRkiggtGL 76
|
90
....*....|..
gi 1081349562 402 GLSNVHDILDKY 413
Cdd:smart00387 77 GLSIVKKLVELH 88
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
72-413 |
4.05e-33 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 128.43 E-value: 4.05e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 72 SRLLDVFYSFYPIVVESLIGRVLAFYLFPILGFNQVM--INTHYWINFIIEVSIYPLYFYFTKFVKIDFYNLQKGVKKNY 149
Cdd:COG3290 2 LLLLLLLLLLLILLILILILLLLLLIILLLILLLVLLllLFLLFVIILLLLLLILLLILLLLLLLLLAALLLKLLEEIAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 150 LSRYFVLMNVSMFFYII-----------------LLQVLVIGE-------GFIPNAVEHREHLVGIYVVIFFVMLIYLNS 205
Cdd:COG3290 82 LVEEREAVLESIREGVIavdrdgritlindaarrLLGLDAIGRpidevlaEVLETGERDEEILLNGRVLVVNRVPIRDDG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 206 TLTEKLELEllyQKNKQLEELSVYSKHVESLYNEIRSFRHDYINVLTSIQEGIELKDIEAIQEVYDNVLSKTKENFSnsk 285
Cdd:COG3290 162 RVVGAVATF---RDRTELERLEEELEGVKELAEALRAQRHDFRNHLHTISGLLQLGEYDEALEYIDEISEELQELID--- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 286 ydfANLSNITNTAIKSVVSAKLLEAQSKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAA--CLAEKPCLTLAIF 363
Cdd:COG3290 236 ---SLLSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLPLSDTDLVTILGNLLDNAIEAVekLPEEERRVELSIR 312
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1081349562 364 QEKDSDIIVVENS---IREEKINisKIFDLGYSSK-GENRGIGLSNVHDILDKY 413
Cdd:COG3290 313 DDGDELVIEVEDSgpgIPEELLE--KIFERGFSTKlGEGRGLGLALVKQIVEKY 364
|
|
| HATPase_AgrC-ComD-like |
cd16935 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
298-433 |
1.10e-22 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.
Pssm-ID: 340412 [Multi-domain] Cd Length: 134 Bit Score: 93.02 E-value: 1.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 298 AIKSVVSAKLLEAQSKNVEVHIEVESLVSLsNMDALDIITILSILLDNAIEAA--CLAEKPCLTLAIFQEKDSDIIVVEN 375
Cdd:cd16935 1 ALDSLLSEKLELAREKGIEFTIEIDIPILL-PISPLDLCIIFGNLLDNAIEACakIDKENRFIHLKIRQKKGFLIISIEN 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1081349562 376 SIREEkinISKIFDLGYSSKGE-NRGIGLSNVHDILDKYpAAFIKTSSRKHLFRQTIEI 433
Cdd:cd16935 80 SYEGE---LKKKNGLFLSTKKDkNHGIGLKSIREIVKKY-NGNLSIEYENGIFTLSILL 134
|
|
| YesM |
COG2972 |
Sensor histidine kinase YesM [Signal transduction mechanisms]; |
13-435 |
3.08e-18 |
|
Sensor histidine kinase YesM [Signal transduction mechanisms];
Pssm-ID: 442211 [Multi-domain] Cd Length: 445 Bit Score: 86.61 E-value: 3.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 13 HIIVVLLLYQHISGNKFKWYWFIIFPITFRILFLLVPPLAYFAYIFFLPVYSLYRNKYGSRLLDVFYSFYPIVVESLIGR 92
Cdd:COG2972 32 IILLLLLLLILLLLLLILLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLLILLLLLLLLLLLILLLSLLLLLALILLLAL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 93 VLAFYLFPILGFNQVMINTHYWINFIIEVSIYPLYFYFTKFVKIDFYNLQKGVKKNYLS---RYFVLMNVSMFFYIILLQ 169
Cdd:COG2972 112 LLLLSILLLILGLLLIILLLLSLLGWTLVSLIPKSELFRGLFSLRRLILLIILLLLLLAlllSYLLSRSITRPIKRLKKA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 170 VLVIGEGFIPNAVEHREHLVGIYVVIFFVMLIYLNSTLteklelellyQKNKQLEELSvysKHVESLYNEIRSFRHDYIN 249
Cdd:COG2972 192 MKKVEKGDLVRLEVSGNDEIGILARSFNEMVERIKELI----------EEVYELELEK---KEAELKALQAQINPHFLFN 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 250 VLTSIQEGIELKDIEAIQEVYDNVLSKTKENFSNSKyDFANLsNITNTAIKSVVSAKLLEAQSKnVEVHIEVESLVslsn 329
Cdd:COG2972 259 TLNSIRWLAELEDPEEAEEMLEALSKLLRYSLSKGD-ELVTL-EEELELIKSYLEIQKLRFGDR-LEVEIEIDEEL---- 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 330 MDALDIITILSILLDNAIEAA--CLAEKPCLTLAIFQEKDSDIIVVENS---IREEKINisKIFDlGYSSKGENRGIGLS 404
Cdd:COG2972 332 LDLLIPKLILQPLVENAIEHGiePKEGGGTIRISIRKEGDRLVITVEDNgvgMPEEKLE--KLLE-ELSSKGEGRGIGLR 408
|
410 420 430
....*....|....*....|....*....|....
gi 1081349562 405 NVHDILDKY--PAAFIKTSSRKHL-FRQTIEIKR 435
Cdd:COG2972 409 NVRERLKLYygEEYGLEIESEPGEgTTVTIRIPL 442
|
|
| HATPase_c_5 |
pfam14501 |
GHKL domain; This family represents the structurally related ATPase domains of histidine ... |
330-433 |
4.66e-17 |
|
GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 433996 [Multi-domain] Cd Length: 102 Bit Score: 76.10 E-value: 4.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 330 MDALDIITILSILLDNAIEAA-CLAEKPCLTLAIFQEKDSDIIVVENSIREEKINISKIFDlgYSSKGENRGIGLSNVHD 408
Cdd:pfam14501 1 ISDVDLCVIFGNLLDNAIEACsKIDDNRFIRLKIREKQNFLIIRIENTYEGELKFEGKLPS--TKTKGDGHGIGLKSIRR 78
|
90 100
....*....|....*....|....*
gi 1081349562 409 ILDKYPaAFIKTSSRKHLFRQTIEI 433
Cdd:pfam14501 79 IVKKYG-GNLSTEIENGIFTLSILL 102
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
299-404 |
5.25e-09 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 58.00 E-value: 5.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 299 IKSVVSA-----KLLEAQSKNVEVHIEVESLV--SLSNMDALDIITILSILLDNAIEAACLAEKPCLTLAI-FQEKDSDI 370
Cdd:PRK11086 391 IKSPVIAgfllgKISRARELGITLIISEDSQLpdSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLhYRNGWLHC 470
|
90 100 110
....*....|....*....|....*....|....
gi 1081349562 371 IVVENSIREEKINISKIFDLGYSSKGENRGIGLS 404
Cdd:PRK11086 471 EVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLY 504
|
|
| HATPase_DpiB-CitA-like |
cd16915 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
336-409 |
1.12e-08 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.
Pssm-ID: 340392 [Multi-domain] Cd Length: 104 Bit Score: 52.67 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 336 ITILSILLDNAIEAACLAEKPC--LTLAIFQEKDSDIIVVENS---IREEKINisKIFDLGYSSKGE-NRGIGLSNVHDI 409
Cdd:cd16915 2 ITIVGNLIDNALDALAATGAPNkqVEVFLRDEGDDLVIEVRDTgpgIAPELRD--KVFERGVSTKGQgERGIGLALVRQS 79
|
|
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
299-413 |
1.61e-08 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 56.07 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 299 IKSVVSAKLLEAQSKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAAclAEKPCLTLAIFQEKDSDIIVVENS-- 376
Cdd:COG0642 188 LEEVVELFRPLAEEKGIELELDLPDDLPTVRGDPDRLRQVLLNLLSNAIKYT--PEGGTVTVSVRREGDRVRISVEDTgp 265
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1081349562 377 -IREEKinISKIFDLGYSSKGENR----GIGLSNVHDILDKY 413
Cdd:COG0642 266 gIPPED--LERIFEPFFRTDPSRRgggtGLGLAIVKRIVELH 305
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
218-413 |
1.71e-07 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 51.83 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 218 QKNKQLEELsvyskhvESLYNE-IRSFRHDYINVLTSIQEGIEL----------KDIEAIQEVYDNV------------L 274
Cdd:COG2205 4 EALEELEEL-------ERLKSEfLANVSHELRTPLTSILGAAELlldeedlspeERRELLEIIRESAerllrliedlldL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 275 SKTKENFSNSKYDFANLSNItntaIKSVVSAKLLEAQSKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAAclAE 354
Cdd:COG2205 77 SRLESGKLSLELEPVDLAEL----LEEAVEELRPLAEEKGIRLELDLPPELPLVYADPELLEQVLANLLDNAIKYS--PP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081349562 355 KPCLTLAIFQEKDSDIIVVENS---IREEKinISKIFDLGYSSKGENR----GIGLSNVHDILDKY 413
Cdd:COG2205 151 GGTITISARREGDGVRISVSDNgpgIPEEE--LERIFERFYRGDNSRGeggtGLGLAIVKRIVEAH 214
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
330-413 |
2.00e-07 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 49.18 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 330 MDALDIITILSILLDNAIEAAclAEKPCLTLAIFQEKDSDIIVVENS---IREEKINisKIFDLGYSSKGENR-----GI 401
Cdd:smart00387 1 GDPDRLRQVLSNLLDNAIKYT--PEGGRITVTLERDGDHVEITVEDNgpgIPPEDLE--KIFEPFFRTDKRSRkiggtGL 76
|
90
....*....|..
gi 1081349562 402 GLSNVHDILDKY 413
Cdd:smart00387 77 GLSIVKKLVELH 88
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
309-411 |
5.34e-06 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 48.42 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 309 EAQSKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAacLAEKPCLTLAIFQEKDSDIIVVENS---IREEkiNIS 385
Cdd:COG5000 292 ALKEKDIRLELDLDPDLPEVLADRDQLEQVLINLLKNAIEA--IEEGGEIEVSTRREDGRVRIEVSDNgpgIPEE--VLE 367
|
90 100
....*....|....*....|....*.
gi 1081349562 386 KIFDLGYSSKGENRGIGLSNVHDILD 411
Cdd:COG5000 368 RIFEPFFTTKPKGTGLGLAIVKKIVE 393
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
296-413 |
7.95e-06 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 47.87 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 296 NTAIKSVVSakLLEAQ--SKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAACLAEKPCLTLAIFQEKDSDIIVV 373
Cdd:COG4191 218 NELIDEALE--LLRPRlkARGIEVELDLPPDLPPVLGDPGQLEQVLLNLLINAIDAMEEGEGGRITISTRREGDYVVISV 295
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1081349562 374 ENS---IREEkiNISKIFDLGYSSK--GENRGIGLSNVHDILDKY 413
Cdd:COG4191 296 RDNgpgIPPE--VLERIFEPFFTTKpvGKGTGLGLSISYGIVEKH 338
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
330-413 |
1.58e-05 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 43.90 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 330 MDALDIITILSILLDNAIEAACLAEKPCLTLaifQEKDSDIIVVENS---IREEKI-NISKIFDLGYSSKGENRGIGLSN 405
Cdd:pfam02518 1 GDELRLRQVLSNLLDNALKHAAKAGEITVTL---SEGGELTLTVEDNgigIPPEDLpRIFEPFSTADKRGGGGTGLGLSI 77
|
....*...
gi 1081349562 406 VHDILDKY 413
Cdd:pfam02518 78 VRKLVELL 85
|
|
| PRK10364 |
PRK10364 |
two-component system sensor histidine kinase ZraS; |
309-423 |
1.15e-03 |
|
two-component system sensor histidine kinase ZraS;
Pssm-ID: 236674 [Multi-domain] Cd Length: 457 Bit Score: 40.93 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 309 EAQSKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAacLAEKPCLTLAIFQEKDSDIIVVENS---IREEKINis 385
Cdd:PRK10364 323 DANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQA--IGQHGVISVTASESGAGVKISVTDSgkgIAADQLE-- 398
|
90 100 110
....*....|....*....|....*....|....*...
gi 1081349562 386 KIFDLGYSSKGENRGIGLSNVHDILDKYPAAfIKTSSR 423
Cdd:PRK10364 399 AIFTPYFTTKAEGTGLGLAVVHNIVEQHGGT-IQVASQ 435
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
299-413 |
3.11e-03 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 39.54 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081349562 299 IKSVVSAKLLEAQSKNVEVHIEVESLVSLSNMDALDIITILSILLDNAIEAAclAEKPCLTLAIFQEKDSDIIVVENS-- 376
Cdd:COG5002 246 LEEVVEELRPLAEEKGIELELDLPEDPLLVLGDPDRLEQVLTNLLDNAIKYT--PEGGTITVSLREEDDQVRISVRDTgi 323
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1081349562 377 -IREEkiNISKIFDLGY-SSKGENR-----GIGLSNVHDILDKY 413
Cdd:COG5002 324 gIPEE--DLPRIFERFYrVDKSRSRetggtGLGLAIVKHIVEAH 365
|
|
|