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Conserved domains on  [gi|1081311480|gb|OFU51423|]
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hypothetical protein HMPREF3071_00075 [Clostridium sp. HMSC19A11]

Protein Classification

conserved phage C-terminal domain-containing protein( domain architecture ID 10560068)

conserved phage C-terminal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phg_2220_C pfam09524
Conserved phage C-terminus (Phg_2220_C); This entry represents the conserved C-terminal domain ...
 218-289 2.89e-29

Conserved phage C-terminus (Phg_2220_C); This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.


:

Pssm-ID: 430663  Cd Length: 73  Bit Score: 106.60  E-value: 2.89e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081311480 218 IIRKLNNESGKNFKADLSITKALIDKRLKEGYSLEDFYKVIEAKVRRWRYTDMEIYIEPTILF-GYEFESYLN 289
Cdd:pfam09524   1 IIEYLNEKAGKNFKANTKKTKKLIKARLNEGYTVEDFKKVIDLKVKEWNDTKMEKYLRPETLFnGTKFEGYLN 73
 
Name Accession Description Interval E-value
Phg_2220_C pfam09524
Conserved phage C-terminus (Phg_2220_C); This entry represents the conserved C-terminal domain ...
 218-289 2.89e-29

Conserved phage C-terminus (Phg_2220_C); This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.


Pssm-ID: 430663  Cd Length: 73  Bit Score: 106.60  E-value: 2.89e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081311480 218 IIRKLNNESGKNFKADLSITKALIDKRLKEGYSLEDFYKVIEAKVRRWRYTDMEIYIEPTILF-GYEFESYLN 289
Cdd:pfam09524   1 IIEYLNEKAGKNFKANTKKTKKLIKARLNEGYTVEDFKKVIDLKVKEWNDTKMEKYLRPETLFnGTKFEGYLN 73
phg_TIGR02220 TIGR02220
phage conserved hypothetical protein, C-terminal domain; This model represents the conserved ...
 218-290 7.34e-18

phage conserved hypothetical protein, C-terminal domain; This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274039  Cd Length: 77  Bit Score: 76.72  E-value: 7.34e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1081311480 218 IIRKLNNESGKNFKADLSITKALIDKRLKEGYSLEDFYKVIEAKVRRWRYTDMEIYIEPTILFG-YEFESYLNE 290
Cdd:TIGR02220   4 IIEYLNEKAGKSFKHTTAKHKKLIKARWNEGYTLEDFKKVIDNKVSEWLGTEFEKYLRPKTLFGnKKFDGYLNQ 77
 
Name Accession Description Interval E-value
Phg_2220_C pfam09524
Conserved phage C-terminus (Phg_2220_C); This entry represents the conserved C-terminal domain ...
 218-289 2.89e-29

Conserved phage C-terminus (Phg_2220_C); This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.


Pssm-ID: 430663  Cd Length: 73  Bit Score: 106.60  E-value: 2.89e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081311480 218 IIRKLNNESGKNFKADLSITKALIDKRLKEGYSLEDFYKVIEAKVRRWRYTDMEIYIEPTILF-GYEFESYLN 289
Cdd:pfam09524   1 IIEYLNEKAGKNFKANTKKTKKLIKARLNEGYTVEDFKKVIDLKVKEWNDTKMEKYLRPETLFnGTKFEGYLN 73
phg_TIGR02220 TIGR02220
phage conserved hypothetical protein, C-terminal domain; This model represents the conserved ...
 218-290 7.34e-18

phage conserved hypothetical protein, C-terminal domain; This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274039  Cd Length: 77  Bit Score: 76.72  E-value: 7.34e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1081311480 218 IIRKLNNESGKNFKADLSITKALIDKRLKEGYSLEDFYKVIEAKVRRWRYTDMEIYIEPTILFG-YEFESYLNE 290
Cdd:TIGR02220   4 IIEYLNEKAGKSFKHTTAKHKKLIKARWNEGYTLEDFKKVIDNKVSEWLGTEFEKYLRPKTLFGnKKFDGYLNQ 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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