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Conserved domains on  [gi|1081285169|gb|OFU26156|]
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hypothetical protein HMPREF3077_00120 [Clostridium sp. HMSC19C05]

Protein Classification

glycoside hydrolase family 55 protein( domain architecture ID 12118659)

glycoside hydrolase family 55 protein similar to Bipolaris zeicola glucan 1,3-beta-glucosidase that catalazes the successive hydrolysis of beta-D-glucose units from the non-reducing ends of (1->3)-beta-D-glucans, releasing alpha-glucose

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pectate_lyase_3 pfam12708
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ...
 12-216 1.05e-37

Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.


:

Pssm-ID: 403800 [Multi-domain]  Cd Length: 213  Bit Score: 137.06  E-value: 1.05e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285169  12 WINVVERGIKNDGSYNIGPDLQDIIDE--IETDFCVLYFPKGKYLFTSGVKINKEIVLQGDSNSPT---ETTQFITRGVE 86
Cdd:pfam12708   1 FRNVKDYGAKGDGVTDDTAAIQKAIDDggATTTPAVVYFPPGTYLVSSPIILYSGTVLVGDGNNPPvlkAAPNFVGAGLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285169  87 NMSIITlTGKKQCIKNINFYSDSCEIQVNEEPPTKGNPKYHYEMIINKNEKNVEMNNVSAILYDNSK-NMIKGLGH-YEN 164
Cdd:pfam12708  81 DGDPYT-GGGPGIINTNNFYRQIRNLVIDITGVAPGATGIHWQVAQATSLQNVVFEMSFGSGNKHQGiFMENGSGGfLND 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1081285169 165 IYISGfSGTGIRI-PYYSIVNDITVSSCGLGIDT--GIDTIISNSRISKCQNGMR 216
Cdd:pfam12708 160 LVFNG-GDIGIAVgNQQFTTRNITFHNCGTGIDVlwGWGWTYSNNNINNCGVGID 213
 
Name Accession Description Interval E-value
Pectate_lyase_3 pfam12708
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ...
 12-216 1.05e-37

Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.


Pssm-ID: 403800 [Multi-domain]  Cd Length: 213  Bit Score: 137.06  E-value: 1.05e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285169  12 WINVVERGIKNDGSYNIGPDLQDIIDE--IETDFCVLYFPKGKYLFTSGVKINKEIVLQGDSNSPT---ETTQFITRGVE 86
Cdd:pfam12708   1 FRNVKDYGAKGDGVTDDTAAIQKAIDDggATTTPAVVYFPPGTYLVSSPIILYSGTVLVGDGNNPPvlkAAPNFVGAGLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285169  87 NMSIITlTGKKQCIKNINFYSDSCEIQVNEEPPTKGNPKYHYEMIINKNEKNVEMNNVSAILYDNSK-NMIKGLGH-YEN 164
Cdd:pfam12708  81 DGDPYT-GGGPGIINTNNFYRQIRNLVIDITGVAPGATGIHWQVAQATSLQNVVFEMSFGSGNKHQGiFMENGSGGfLND 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1081285169 165 IYISGfSGTGIRI-PYYSIVNDITVSSCGLGIDT--GIDTIISNSRISKCQNGMR 216
Cdd:pfam12708 160 LVFNG-GDIGIAVgNQQFTTRNITFHNCGTGIDVlwGWGWTYSNNNINNCGVGID 213
 
Name Accession Description Interval E-value
Pectate_lyase_3 pfam12708
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ...
 12-216 1.05e-37

Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.


Pssm-ID: 403800 [Multi-domain]  Cd Length: 213  Bit Score: 137.06  E-value: 1.05e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285169  12 WINVVERGIKNDGSYNIGPDLQDIIDE--IETDFCVLYFPKGKYLFTSGVKINKEIVLQGDSNSPT---ETTQFITRGVE 86
Cdd:pfam12708   1 FRNVKDYGAKGDGVTDDTAAIQKAIDDggATTTPAVVYFPPGTYLVSSPIILYSGTVLVGDGNNPPvlkAAPNFVGAGLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081285169  87 NMSIITlTGKKQCIKNINFYSDSCEIQVNEEPPTKGNPKYHYEMIINKNEKNVEMNNVSAILYDNSK-NMIKGLGH-YEN 164
Cdd:pfam12708  81 DGDPYT-GGGPGIINTNNFYRQIRNLVIDITGVAPGATGIHWQVAQATSLQNVVFEMSFGSGNKHQGiFMENGSGGfLND 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1081285169 165 IYISGfSGTGIRI-PYYSIVNDITVSSCGLGIDT--GIDTIISNSRISKCQNGMR 216
Cdd:pfam12708 160 LVFNG-GDIGIAVgNQQFTTRNITFHNCGTGIDVlwGWGWTYSNNNINNCGVGID 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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