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Conserved domains on  [gi|1080718082|gb|OFO88680|]
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hypothetical protein HMPREF3013_00420 [Propionibacterium sp. HMSC062D05]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3099 super family cl12839
Protein of unknown function (DUF3099); Some members in this family of proteins are annotated ...
 1-44 7.10e-09

Protein of unknown function (DUF3099); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.


The actual alignment was detected with superfamily member pfam11298:

Pssm-ID: 431795  Cd Length: 72  Bit Score: 46.82  E-value: 7.10e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1080718082  1 MLVRTVCFIGLVIT---PSPW-RWSFLVGAAVIPAIAVVLGNAADRRT 44
Cdd:pfam11298 24 MGIRIPCLILAVVLyqvHNGWlALVLIVGAVPLPWVAVVIANDRPPRR 71
 
Name Accession Description Interval E-value
DUF3099 pfam11298
Protein of unknown function (DUF3099); Some members in this family of proteins are annotated ...
 1-44 7.10e-09

Protein of unknown function (DUF3099); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.


Pssm-ID: 431795  Cd Length: 72  Bit Score: 46.82  E-value: 7.10e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1080718082  1 MLVRTVCFIGLVIT---PSPW-RWSFLVGAAVIPAIAVVLGNAADRRT 44
Cdd:pfam11298 24 MGIRIPCLILAVVLyqvHNGWlALVLIVGAVPLPWVAVVIANDRPPRR 71
 
Name Accession Description Interval E-value
DUF3099 pfam11298
Protein of unknown function (DUF3099); Some members in this family of proteins are annotated ...
 1-44 7.10e-09

Protein of unknown function (DUF3099); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.


Pssm-ID: 431795  Cd Length: 72  Bit Score: 46.82  E-value: 7.10e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1080718082  1 MLVRTVCFIGLVIT---PSPW-RWSFLVGAAVIPAIAVVLGNAADRRT 44
Cdd:pfam11298 24 MGIRIPCLILAVVLyqvHNGWlALVLIVGAVPLPWVAVVIANDRPPRR 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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