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Conserved domains on  [gi|339895822|ref|NP_861430|]
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annexin A11a isoform 1 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 456-521 1.81e-30

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


:

Pssm-ID: 395139  Cd Length: 66  Bit Score: 112.95  E-value: 1.81e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  456 YFAERLHKAMKGAGTKDRTLIRIMVTRSEVDMLDIRQEYAKNYGKSLYTAISGDTSGDYKKLLLKL 521
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 297-362 3.20e-29

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


:

Pssm-ID: 395139  Cd Length: 66  Bit Score: 109.49  E-value: 3.20e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  297 YDAYELKEAIKGAGTDEACLIEILASRSNAEIREINQVFKAENKKSLEDAISGDTSGHFRRLLVSL 362
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 225-290 2.55e-27

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


:

Pssm-ID: 395139  Cd Length: 66  Bit Score: 104.48  E-value: 2.55e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  225 RDAEVLRKAMKGFGTDEQAIINLLGSRSNKQRVPLLVSYKTAYGKDLIKDLKSELSGNFEKLVLAM 290
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 381-446 2.99e-23

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


:

Pssm-ID: 395139  Cd Length: 66  Bit Score: 92.92  E-value: 2.99e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  381 DAQALYQAgENKLGTDESKFNAILCARSKAHLRAVFNEYQHMCGRDIEKSIEREMSGDLESGMLAV 446
Cdd:pfam00191   2 DAELLRKA-MKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
DUF3824 pfam12868
Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It ...
 6-72 2.20e-08

Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known.


:

Pssm-ID: 372351 [Multi-domain]  Cd Length: 145  Bit Score: 53.21  E-value: 2.20e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 339895822    6 YPPQSGYPPQ-GGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAYPPQPGAF-PGQPGQYPSVP 72
Cdd:pfam12868  61 YPPSPAGPYAsQGQYYPETNYFPPPPGSTPQPPVDPQPNAPPPPYNPADYPPPPGAApPPQPYQYPPPP 129
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 4-206 1.43e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    4 PGYPPQSGYPPQGGGYPPQPGAYPPAA-GGYPPQP----------GMYPPQAGGYPPQPGAYPPQPGAFPGQPgqYPSVP 72
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARrPDAPPQSarprapvddrGDPRGPAPPSPLPPDTHAPDPPPPSPSP--AANEP 2638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822   73 SGGWGA----PIGLDNLPNPGFNASNIQGMANQFAADGGFAPNPSMFSGGYPGPQPGGPPAVSPNQPYGMYLQPGGGMPQ 148
Cdd:PHA03247 2639 DPHPPPtvppPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 339895822  149 NPGMGYPGGPPPGQQMPSYPNIPAPTPSGPSYPRAPSPNPSMPGYGGGYGGGAPAVPA 206
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776
 
Name Accession Description Interval E-value
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 456-521 1.81e-30

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 112.95  E-value: 1.81e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  456 YFAERLHKAMKGAGTKDRTLIRIMVTRSEVDMLDIRQEYAKNYGKSLYTAISGDTSGDYKKLLLKL 521
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 297-362 3.20e-29

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 109.49  E-value: 3.20e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  297 YDAYELKEAIKGAGTDEACLIEILASRSNAEIREINQVFKAENKKSLEDAISGDTSGHFRRLLVSL 362
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 225-290 2.55e-27

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 104.48  E-value: 2.55e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  225 RDAEVLRKAMKGFGTDEQAIINLLGSRSNKQRVPLLVSYKTAYGKDLIKDLKSELSGNFEKLVLAM 290
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 381-446 2.99e-23

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 92.92  E-value: 2.99e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  381 DAQALYQAgENKLGTDESKFNAILCARSKAHLRAVFNEYQHMCGRDIEKSIEREMSGDLESGMLAV 446
Cdd:pfam00191   2 DAELLRKA-MKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
ANX smart00335
Annexin repeats;
310-362 3.42e-23

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 92.47  E-value: 3.42e-23
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   310 GTDEACLIEILASRSNAEIREINQVFKAENKKSLEDAISGDTSGHFRRLLVSL 362
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
ANX smart00335
Annexin repeats;
469-521 1.95e-22

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 90.16  E-value: 1.95e-22
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   469 GTKDRTLIRIMVTRSEVDMLDIRQEYAKNYGKSLYTAISGDTSGDYKKLLLKL 521
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
ANX smart00335
Annexin repeats;
238-290 9.30e-20

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 82.46  E-value: 9.30e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   238 GTDEQAIINLLGSRSNKQRVPLLVSYKTAYGKDLIKDLKSELSGNFEKLVLAM 290
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
ANX smart00335
Annexin repeats;
394-446 1.39e-17

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 76.29  E-value: 1.39e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   394 GTDESKFNAILCARSKAHLRAVFNEYQHMCGRDIEKSIEREMSGDLESGMLAV 446
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
DUF3824 pfam12868
Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It ...
 6-72 2.20e-08

Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known.


Pssm-ID: 372351 [Multi-domain]  Cd Length: 145  Bit Score: 53.21  E-value: 2.20e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 339895822    6 YPPQSGYPPQ-GGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAYPPQPGAF-PGQPGQYPSVP 72
Cdd:pfam12868  61 YPPSPAGPYAsQGQYYPETNYFPPPPGSTPQPPVDPQPNAPPPPYNPADYPPPPGAApPPQPYQYPPPP 129
PHA03247 PHA03247
large tegument protein UL36; Provisional
 4-206 1.43e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    4 PGYPPQSGYPPQGGGYPPQPGAYPPAA-GGYPPQP----------GMYPPQAGGYPPQPGAYPPQPGAFPGQPgqYPSVP 72
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARrPDAPPQSarprapvddrGDPRGPAPPSPLPPDTHAPDPPPPSPSP--AANEP 2638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822   73 SGGWGA----PIGLDNLPNPGFNASNIQGMANQFAADGGFAPNPSMFSGGYPGPQPGGPPAVSPNQPYGMYLQPGGGMPQ 148
Cdd:PHA03247 2639 DPHPPPtvppPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 339895822  149 NPGMGYPGGPPPGQQMPSYPNIPAPTPSGPSYPRAPSPNPSMPGYGGGYGGGAPAVPA 206
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776
dnaA PRK14086
chromosomal replication initiator protein DnaA;
4-79 5.59e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 42.51  E-value: 5.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822   4 PGYPPQSGYPPQGGGYP-----PQPGAYPPAAGGYPPQ--PGMYPPQAGgyPPQPGAYPPQPGAFPGQPGQYPSVPSGGW 76
Cdd:PRK14086 131 PGLPRQDQLPTARPAYPayqqrPEPGAWPRAADDYGWQqqRLGFPPRAP--YASPASYAPEQERDREPYDAGRPEYDQRR 208


                 ...
gi 339895822  77 GAP 79
Cdd:PRK14086 209 RDY 211
PRP smart00157
Major prion protein; The prion protein is a major component of scrapie-associated fibrils in ...
 8-107 9.32e-04

Major prion protein; The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.


Pssm-ID: 197548 [Multi-domain]  Cd Length: 218  Bit Score: 40.62  E-value: 9.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822     8 PQSGYPPQGGGYPPQ--PGA--YPPAAGGYPPQPGmyppqAGGYPPQPGAYPPQPGAFPGQPgqypsvPSGGWGAPIGLD 83
Cdd:smart00157   6 PGGGWNTGGSRYPGQgsPGGnrYPPQGGGWGQPHG-----GGWGQPHGGGWGQPHGGGWGQP------HGGGWGQGGGTH 74

                           90       100
                   ....*....|....*....|....*...
gi 339895822    84 NLPN----PGFNASNIQGMANQFAADGG 107
Cdd:smart00157  75 NQWNkpskPKTNMKHVAGAAAAGAVVGG 102
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 1-69 1.85e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.95  E-value: 1.85e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 339895822    1 MSYPGYPpqsGYPPQGGGYPP------QPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAypPQPGAFPGQPGQYP 69
Cdd:TIGR01628 422 MPTPMGP---GGPLRPNGLAPmnavraPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDL--PQPQSTASQGGQNK 491
 
Name Accession Description Interval E-value
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 456-521 1.81e-30

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 112.95  E-value: 1.81e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  456 YFAERLHKAMKGAGTKDRTLIRIMVTRSEVDMLDIRQEYAKNYGKSLYTAISGDTSGDYKKLLLKL 521
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 297-362 3.20e-29

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 109.49  E-value: 3.20e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  297 YDAYELKEAIKGAGTDEACLIEILASRSNAEIREINQVFKAENKKSLEDAISGDTSGHFRRLLVSL 362
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 225-290 2.55e-27

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 104.48  E-value: 2.55e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  225 RDAEVLRKAMKGFGTDEQAIINLLGSRSNKQRVPLLVSYKTAYGKDLIKDLKSELSGNFEKLVLAM 290
Cdd:pfam00191   1 YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
Annexin pfam00191
Annexin; This family of annexins also includes giardin that has been shown to function as an ...
 381-446 2.99e-23

Annexin; This family of annexins also includes giardin that has been shown to function as an annexin.


Pssm-ID: 395139  Cd Length: 66  Bit Score: 92.92  E-value: 2.99e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 339895822  381 DAQALYQAgENKLGTDESKFNAILCARSKAHLRAVFNEYQHMCGRDIEKSIEREMSGDLESGMLAV 446
Cdd:pfam00191   2 DAELLRKA-MKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLLLAL 66
ANX smart00335
Annexin repeats;
310-362 3.42e-23

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 92.47  E-value: 3.42e-23
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   310 GTDEACLIEILASRSNAEIREINQVFKAENKKSLEDAISGDTSGHFRRLLVSL 362
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
ANX smart00335
Annexin repeats;
469-521 1.95e-22

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 90.16  E-value: 1.95e-22
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   469 GTKDRTLIRIMVTRSEVDMLDIRQEYAKNYGKSLYTAISGDTSGDYKKLLLKL 521
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
ANX smart00335
Annexin repeats;
238-290 9.30e-20

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 82.46  E-value: 9.30e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   238 GTDEQAIINLLGSRSNKQRVPLLVSYKTAYGKDLIKDLKSELSGNFEKLVLAM 290
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
ANX smart00335
Annexin repeats;
394-446 1.39e-17

Annexin repeats;


Pssm-ID: 197661  Cd Length: 53  Bit Score: 76.29  E-value: 1.39e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 339895822   394 GTDESKFNAILCARSKAHLRAVFNEYQHMCGRDIEKSIEREMSGDLESGMLAV 446
Cdd:smart00335   1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
DUF3824 pfam12868
Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It ...
 6-72 2.20e-08

Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known.


Pssm-ID: 372351 [Multi-domain]  Cd Length: 145  Bit Score: 53.21  E-value: 2.20e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 339895822    6 YPPQSGYPPQ-GGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAYPPQPGAF-PGQPGQYPSVP 72
Cdd:pfam12868  61 YPPSPAGPYAsQGQYYPETNYFPPPPGSTPQPPVDPQPNAPPPPYNPADYPPPPGAApPPQPYQYPPPP 129
Cytadhesin_P30 pfam07271
Cytadhesin P30/P32; This family consists of several Mycoplasma species specific Cytadhesin P32 ...
 1-66 3.68e-07

Cytadhesin P30/P32; This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localized on the tip organelle. It is thought that it is important in cytadherence and virulence. The N-terminus contains two predicted transmembrane helices followed by a long region of a short 6 residue proline rich repeat.


Pssm-ID: 429374 [Multi-domain]  Cd Length: 275  Bit Score: 51.89  E-value: 3.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    1 MSYPGYPPQSGYPPQGG------------GYPPQPGAYPPAAGGYPPQPGMYP----PQAGGYPPQPGAYPPQPGaFPGQ 64
Cdd:pfam07271 193 QMRPGFNQMPGMPPRPGfpnpmpnmqprpGFRPQPGPMGNRPGGGFPHPGTPMgpnrMPNPGMNQRPGMAPPRPG-FPPQ 271


                  ..
gi 339895822   65 PG 66
Cdd:pfam07271 272 NG 273
DUF3824 pfam12868
Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It ...
 6-74 9.38e-06

Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known.


Pssm-ID: 372351 [Multi-domain]  Cd Length: 145  Bit Score: 45.50  E-value: 9.38e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 339895822    6 YPPQSGYPPQGGGYPPQPGA--YPPAAGGYPPQPGMYPPqaGGYPPQPGAYPP-QPGAFPGQPGQYPSVPSG 74
Cdd:pfam12868  69 YASQGQYYPETNYFPPPPGStpQPPVDPQPNAPPPPYNP--ADYPPPPGAAPPpQPYQYPPPPGPDPYAPRP 138
PHA03247 PHA03247
large tegument protein UL36; Provisional
 4-206 1.43e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    4 PGYPPQSGYPPQGGGYPPQPGAYPPAA-GGYPPQP----------GMYPPQAGGYPPQPGAYPPQPGAFPGQPgqYPSVP 72
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARrPDAPPQSarprapvddrGDPRGPAPPSPLPPDTHAPDPPPPSPSP--AANEP 2638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822   73 SGGWGA----PIGLDNLPNPGFNASNIQGMANQFAADGGFAPNPSMFSGGYPGPQPGGPPAVSPNQPYGMYLQPGGGMPQ 148
Cdd:PHA03247 2639 DPHPPPtvppPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA 2718

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 339895822  149 NPGMGYPGGPPPGQQMPSYPNIPAPTPSGPSYPRAPSPNPSMPGYGGGYGGGAPAVPA 206
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776
MISS pfam15822
MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic ...
 4-81 2.39e-04

MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic MAPK-interacting and spindle-stabilising protein-like proteins. MISS is rich in prolines and has four potential MAPK-phosphorylation sites, a MAPK-docking site, a PEST sequence (PEST motif) and a bipartite nuclear localization signal. The endogenous protein accumulates during mouse meiotic maturation and is found as discrete dots on the MII spindle. MISS is the first example of a physiological MAPK-substrate that is stabilized in MII that specifically regulates MII spindle integrity during the CSF arrest.


Pssm-ID: 318115 [Multi-domain]  Cd Length: 238  Bit Score: 42.67  E-value: 2.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    4 PGYPPQsgYPPQGGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYP--PQPGAYPPQPGAfPGQPGQYPSVPSGGWGAPIG 81
Cdd:pfam15822  78 PGPPAP--FPPSGPSCPPPGGPYPAPTVPGPGPIGPYPTPNMPFPelPRPYGAPTDPAA-AAPSGPWGSMSSGPWAPGMG 154
DAZAP2 pfam11029
DAZ associated protein 2 (DAZAP2); DAZ associated protein 2 has a highly conserved sequence ...
 9-74 2.82e-04

DAZ associated protein 2 (DAZAP2); DAZ associated protein 2 has a highly conserved sequence throughout evolution including a conserved polyproline region and several SH2/SH3 binding sites. It occurs as a single copy gene with a four-exon organization and is located on chromosome 12. It encodes a ubiquitously expressed protein and binds to DAZ and DAZL1 through DAZ repeats.


Pssm-ID: 402565 [Multi-domain]  Cd Length: 129  Bit Score: 40.87  E-value: 2.82e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 339895822    9 QSGYPPQGGGYPPQPGAYPPAAGGYPPQPG-------MYPPQAGGYPPQPGAYPPQPGAFPgqPGQYPSVPSG 74
Cdd:pfam11029   1 YPDAPPAYSQLYQPRYAHPPYAASVAPSMSaayppaqAYPPMAQMASPPPMAYQPPGPAQP--PGQTVVVPGG 71
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 16-206 3.21e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 3.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822  16 GGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAypPQPGAFPGQPGQYPSVPSGGWGAPIGLDNLPNPGFNASNI 95
Cdd:PRK07764 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAA--PAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG 666

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822  96 QGMANQFAADGGFAPNPSMFSGGYPGPQPGGPPAVSPNQPYgmylQPGGGMPQNPGMGYPGGPPPGQQMPSYPNIPAPTP 175
Cdd:PRK07764 667 DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA----TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                        170       180       190
                 ....*....|....*....|....*....|.
gi 339895822 176 SGPSYPRAPSPNPSMPGYGGGYGGGAPAVPA 206
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
DUF3824 pfam12868
Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It ...
 10-74 4.45e-04

Domain of unknwon function (DUF3824); This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known.


Pssm-ID: 372351 [Multi-domain]  Cd Length: 145  Bit Score: 40.49  E-value: 4.45e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 339895822   10 SGYPPQGggYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAYPPQPGAFPGQPGQYPSVPSG 74
Cdd:pfam12868  54 DPYSPSP--YPPSPAGPYASQGQYYPETNYFPPPPGSTPQPPVDPQPNAPPPPYNPADYPPPPGA 116
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 7-89 5.51e-04

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 42.69  E-value: 5.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    7 PPQSGYPPQGGGYPPQPGAY---PPAAGGYPPQPGMYPPQA--GGYPPQPGAYPPQPGAFPGQPGQYPSVPSGGWGAPIG 81
Cdd:pfam09606 201 PPQMGVPGMPGPADAGAQMGqqaQANGGMNPQQMGGAPNQVamQQQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGP 280


                  ....*...
gi 339895822   82 LDNLPNPG 89
Cdd:pfam09606 281 GQPMGPPG 288
dnaA PRK14086
chromosomal replication initiator protein DnaA;
4-79 5.59e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 42.51  E-value: 5.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822   4 PGYPPQSGYPPQGGGYP-----PQPGAYPPAAGGYPPQ--PGMYPPQAGgyPPQPGAYPPQPGAFPGQPGQYPSVPSGGW 76
Cdd:PRK14086 131 PGLPRQDQLPTARPAYPayqqrPEPGAWPRAADDYGWQqqRLGFPPRAP--YASPASYAPEQERDREPYDAGRPEYDQRR 208


                 ...
gi 339895822  77 GAP 79
Cdd:PRK14086 209 RDY 211
PRP smart00157
Major prion protein; The prion protein is a major component of scrapie-associated fibrils in ...
 8-107 9.32e-04

Major prion protein; The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.


Pssm-ID: 197548 [Multi-domain]  Cd Length: 218  Bit Score: 40.62  E-value: 9.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822     8 PQSGYPPQGGGYPPQ--PGA--YPPAAGGYPPQPGmyppqAGGYPPQPGAYPPQPGAFPGQPgqypsvPSGGWGAPIGLD 83
Cdd:smart00157   6 PGGGWNTGGSRYPGQgsPGGnrYPPQGGGWGQPHG-----GGWGQPHGGGWGQPHGGGWGQP------HGGGWGQGGGTH 74

                           90       100
                   ....*....|....*....|....*...
gi 339895822    84 NLPN----PGFNASNIQGMANQFAADGG 107
Cdd:smart00157  75 NQWNkpskPKTNMKHVAGAAAAGAVVGG 102
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 7-79 1.57e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 40.70  E-value: 1.57e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 339895822   7 PPQSGYPPQGGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAYPPQPGAFPgqPGQYPSVPSGGWGAP 79
Cdd:PTZ00436 229 PAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAP--PAKAAAPPAKAAAAP 299
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 3-110 1.60e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 41.17  E-value: 1.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    3 YPGYPPQSGYPPQGGGYPPQP--GAYPPAAGGYPPQPGMYPPQAGGyPPQPGAYPPQPGAFPGQPGQYPSVPSGGWGAPI 80
Cdd:pfam09770 236 FPPQIQQQQQPQQQPQQPQQHpgQGHPVTILQRPQSPQPDPAQPSI-QPQAQQFHQQPPPVPVQPTQILQNPNRLSAARV 314

                          90       100       110
                  ....*....|....*....|....*....|
gi 339895822   81 GLDNLPNPGFNASNIQGMANQFAADGGFAP 110
Cdd:pfam09770 315 GYPQNPQPGVQPAPAHQAHRQQGSFGRQAP 344
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 1-69 1.85e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.95  E-value: 1.85e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 339895822    1 MSYPGYPpqsGYPPQGGGYPP------QPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAypPQPGAFPGQPGQYP 69
Cdd:TIGR01628 422 MPTPMGP---GGPLRPNGLAPmnavraPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDL--PQPQSTASQGGQNK 491
Cytadhesin_P30 pfam07271
Cytadhesin P30/P32; This family consists of several Mycoplasma species specific Cytadhesin P32 ...
 4-91 2.02e-03

Cytadhesin P30/P32; This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localized on the tip organelle. It is thought that it is important in cytadherence and virulence. The N-terminus contains two predicted transmembrane helices followed by a long region of a short 6 residue proline rich repeat.


Pssm-ID: 429374 [Multi-domain]  Cd Length: 275  Bit Score: 40.34  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    4 PGYPPQSGYPPQGGGYPPQP------GAYPPAAGGYPPQPGM-----YPPQAG--------GYPPQPGAyPPQPG----- 59
Cdd:pfam07271 136 PTQPAGVNVANQPQMGINQPqinpqfGPNPQQRIGFPMQPNMgmrpgFNQMPGmppnqmrpGFNQMPGM-PPRPGfpnpm 214

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 339895822   60 -------AFPGQPGQYPSVPSGGW---GAPIGLDNLPNPGFN 91
Cdd:pfam07271 215 pnmqprpGFRPQPGPMGNRPGGGFphpGTPMGPNRMPNPGMN 256
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 13-72 2.04e-03

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 40.58  E-value: 2.04e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339895822  13 PPQGGGYP-PQPGAYPPAAGGYP---PQPGMYPPQAGGYPPQPGAYPPQPGAFPGQPGQYPSVP 72
Cdd:PRK13729 127 PVTATGEPvPQMPASPPGPEGEPqpgNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQVTYQSVP 190
DUF1720 pfam08226
Domain of unknown function (DUF1720); This domain is found in different combinations with ...
 14-67 2.22e-03

Domain of unknown function (DUF1720); This domain is found in different combinations with cortical patch components EF hand, SH3 and ENTH and is therefore likely to be involved in cytoskeletal processes. This family contains many hypothetical proteins.


Pssm-ID: 369766 [Multi-domain]  Cd Length: 75  Bit Score: 37.04  E-value: 2.22e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 339895822   14 PQGGGY-PPQPGAYPPAAGGYPPQP-GMYPPQAGGYPPQP--------GAYPPQPGAFPGQPGQ 67
Cdd:pfam08226   3 PQQTGYmPPQQQQPQQTQQPLQPQPtGFMPQQQTGQGLQPqptgmgqfQPLQPQQTGFQPQAQQ 66
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 8-74 3.97e-03

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 39.81  E-value: 3.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822   8 PQSGYPPQGGGYPPQPG----AYPPAAGGYPPQP-GMYPPQAGGYPPQPGAYP-PQPGAFPG---------QPGQYPSVP 72
Cdd:PRK13729 136 PQMPASPPGPEGEPQPGntpvSFPPQGSVAVPPPtAFYPGNGVTPPPQVTYQSvPVPNRIQRktftynegkKGPSLPYIP 215


                 ..
gi 339895822  73 SG 74
Cdd:PRK13729 216 SG 217
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-78 4.08e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 4.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 339895822   4 PGYPPQSGYPPQGGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPPQPGAYPPQPGAFPGQPGQYPSVPSGGWGA 78
Cdd:PRK07764 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728
Jun pfam03957
Jun-like transcription factor;
4-75 4.58e-03

Jun-like transcription factor;


Pssm-ID: 461108 [Multi-domain]  Cd Length: 231  Bit Score: 38.74  E-value: 4.58e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 339895822    4 PGYPPQSGYPPQGGGYPPQPGAYPPAAGGYPPQPGmyPPQAGGYPPQPGAyPPQPGAFPGQPGQYPSVPSGG 75
Cdd:pfam03957 160 PVYANLSSFNPAAAPASGAAPAQPPQPVSYAAEPP--PFAVPVQHPPPGR-PPRLQALKEEPQTVPEVPSFG 228
Pro-rich pfam15240
Proline-rich protein; This family includes several eukaryotic proline-rich proteins.
 4-67 5.54e-03

Proline-rich protein; This family includes several eukaryotic proline-rich proteins.


Pssm-ID: 464580 [Multi-domain]  Cd Length: 167  Bit Score: 37.71  E-value: 5.54e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 339895822    4 PGYPPQSGYPPQGGGYPPQPGAYPPAAG-GYPPQPGMYPPQAggyPPQPGAYPPQPGAFPGQPGQ 67
Cdd:pfam15240  46 PQGPPPGGFPPQPPASDDPPGPPPPGGPqQPPPQGGKQKPQG---PPPQGGPRPPPGKPQGPPPQ 107
PHA03247 PHA03247
large tegument protein UL36; Provisional
 4-209 6.72e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 6.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822    4 PGYPPQSGYPPQGggypPQPGAYPPAAGgyPPQPGMYPPqaggyPPQPGAYPPQPGAFPGQPGQYPSVPSGGWGAPIGLD 83
Cdd:PHA03247 2670 LGRAAQASSPPQR----PRRRAARPTVG--SLTSLADPP-----PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAA 2738

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 339895822   84 NLPNPGFNASNIQGMANQFAA----DGGFAPNPSMFSGGYPGPQPGGPPAVSPNQPYGMYLQPGGGMPQNPGMGYPGGPP 159
Cdd:PHA03247 2739 PAPPAVPAGPATPGGPARPARppttAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 339895822  160 PGQQMPSYPNIP--APTPSGPSYPRAPSPN---------PSMPGYGGGYGGGAPAVPAISR 209
Cdd:PHA03247 2819 PPAASPAGPLPPptSAQPTAPPPPPGPPPPslplggsvaPGGDVRRRPPSRSPAAKPAAPA 2879
YppG pfam14179
YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which ...
 4-68 7.62e-03

YppG-like protein; The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important.


Pssm-ID: 372950 [Multi-domain]  Cd Length: 101  Bit Score: 36.33  E-value: 7.62e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 339895822    4 PGYPPQSGYPPQGGGYPPQPGaYPPAAggyPPQPGMYPPQAGGYP-PQPGAYPPQP-------GAFPGQPGQY 68
Cdd:pfam14179   3 HNSQPYPYFSQQVYQQPVQPQ-YPPFA---PQQYMPQPPMPYMNPyPKQQPQQQQPsqfqsimSQFKKSDGNY 71
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 10-78 7.84e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 38.95  E-value: 7.84e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 339895822  10 SGYPPQGGGYPPQPGAYPPAAGGYPPQPGMYPPQAGGYPP---QPGAYPPQPGAFPGQPGQYPSVPsGGWGA 78
Cdd:PRK14965 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPapaPAPPAAAAPPARSADPAAAASAG-DRWRA 452
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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