|
Name |
Accession |
Description |
Interval |
E-value |
| Rab_bind |
pfam16704 |
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing ... |
1548-1612 |
1.90e-26 |
|
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing protein 2 and RANBP2-like and GRIP domain-containing protein, has been shown to bind to Rab in GRIP and coiled-coil domain-containing protein 2.
Pssm-ID: 435531 Cd Length: 65 Bit Score: 103.66 E-value: 1.90e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677531374 1548 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 1612
Cdd:pfam16704 1 EPFVWTVEPSKSELTQKLSTTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 65
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
700-1478 |
2.94e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 2.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 700 EKKQLSRDLEVFLSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQklfvktqlygfLKEMGSEVSEDSEEKDV 779
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK-----------LEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 780 VNvlQAVGESLAKINEEKCNLAFQRdEKVLELEKEIKCLQEESvvqcEELKSLLRDYEQEKVLLRKELEEIQSEKEALQS 859
Cdd:TIGR02168 286 LQ--KELYALANEISRLEQQKQILR-ERLANLERQLEELEAQL----EELESKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 860 DLLEMKNANEKTRLENQNLLIQVEEVSqtcSKSEIHNEKEKCFIKEHENLKPLLEQkeLRDRRAELILLKDSLAKSPSVK 939
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEEQLETLR---SKVAQLELQIASLNNEIERLEARLER--LEDRRERLQQEIEELLKKLEEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 940 NdplssVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESY 1019
Cdd:TIGR02168 434 E-----LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1020 KNLLLEYEKQSEQLDVEKER---ANNFEHRIEDLTRqlrnSTLQCETINSDNEDLLArIETLQSNaKLLEVQILEVQRAK 1096
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELisvDEGYEAAIEAALG----GRLQAVVVENLNAAKKA-IAFLKQN-ELGRVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1097 amvDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKqlqkTMQELELVKKDAQQTTLMNMEIADYERLM------- 1169
Cdd:TIGR02168 583 ---GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALS----YLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlv 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1170 ----------KELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIK-------QLLVKTKKEL 1232
Cdd:TIGR02168 656 rpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleelsRQISALRKDL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1233 ADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEH---LKTSAEQHQRTLSAYQQRVTALQEECRAA 1309
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeLEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1310 KAEQATVTSEFESYKVRVHNVLKQ----QKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSE 1385
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRledlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1386 HDTLLERHNKMLQETVSKEAELREKlcsiqsenMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQEEHRKTVETLQQQL 1465
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEEL--------REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE 967
|
810
....*....|...
gi 1677531374 1466 SKMEAQLFQLKNE 1478
Cdd:TIGR02168 968 EEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
448-1221 |
2.77e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 2.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 448 SEKEKLTLMFEIQGLKEQCENLQQEKQEAilnyeslREIMEILQTELGESAGKISqEFESMKQQQASDVHELQQKLRTAF 527
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELKEA-------EEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 528 TEKDALLETVNRLQGENEKLLSQQElvpELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSH 607
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLE---ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 608 EEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLmvQMKVLSEDKEVLSAEV 687
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 688 KSLYEENNKLSSEKKQLSRDLEvfLSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLfVKTQLYGFLKEMG 767
Cdd:TIGR02168 450 EELQEELERLEEALEELREELE--EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK-NQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 768 SEVSEDSE-EKDVVNVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKE 846
Cdd:TIGR02168 527 ELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 847 LEEIQSEKEALQSDLL-------EMKNANEKTRLENQNLLIQV------------------EEVSQTCSKSEIHNEKEKC 901
Cdd:TIGR02168 607 LVKFDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIVTldgdlvrpggvitggsakTNSSILERRREIEELEEKI 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 902 FIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKE----LEEKIENLEKECKEKEEKINKIKLVAVKA 977
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlarLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 978 KKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAES----YKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQ 1053
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElraeLTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1054 LRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAmvdkELEAEKLQKEQKIKEHATTVNELEELQVQLQK 1133
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA----LLRSELEELSEELRELESKRSELRRELEELRE 922
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1134 QKKQLQKTMQELElVKKDAQQTTLMNMEIADYERLMK----------ELNQKLTNKNNKIEDL-------EQEIKIQKQK 1196
Cdd:TIGR02168 923 KLAQLELRLEGLE-VRIDNLQERLSEEYSLTLEEAEAlenkieddeeEARRRLKRLENKIKELgpvnlaaIEEYEELKER 1001
|
810 820
....*....|....*....|....*
gi 1677531374 1197 QETLQEEITSLQSSVQQYEEKNTKI 1221
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
535-1336 |
7.23e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 7.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 535 ETVNRLQGENEKLLSQQELVPELENTIKNLQEKngvyllslSQRDTMLKEL-----EGKINSLTEEKDDFINKLKNSHEE 609
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQ--------AEKAERYKELkaelrELELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 610 MDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKS 689
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 690 LYEENNKLSSEKKQLSRDLEVFLSQKEDviLKEHITQLEKKLQLMVEEQDNLNKLLEN---EQVQKLFVKTQLYGFLKEM 766
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELES--LEAELEELEAELEELESRLEELEEQLETlrsKVAQLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 767 GSEVSEDSEEKDvvNVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKE 846
Cdd:TIGR02168 406 EARLERLEDRRE--RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 847 LEEIQSEKEALQSDLLEMKNANE--KTRLENQNL----------LIQVEE-------------VSQTCSKSEIHNEKEKC 901
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEgvKALLKNQSGlsgilgvlseLISVDEgyeaaieaalggrLQAVVVENLNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 902 FIKEHENLK-----------------PLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSS---VKELEEKIENLEKECK 961
Cdd:TIGR02168 564 FLKQNELGRvtflpldsikgteiqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGvlvVDDLDNALELAKKLRP 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 962 EKEEKINKIKLVA-----VKAKKELDSSRKETQTvkeELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVE 1036
Cdd:TIGR02168 644 GYRIVTLDGDLVRpggviTGGSAKTNSSILERRR---EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1037 KERAnnfEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKE 1116
Cdd:TIGR02168 721 LEEL---SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL----AEAEAEIEELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1117 HATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQttlmnmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQK 1196
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLER------RIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1197 QETLQEEITSLQ---SSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSE 1273
Cdd:TIGR02168 868 IEELESELEALLnerASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1677531374 1274 KHKIH-EHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRvHNVLKQQKN 1336
Cdd:TIGR02168 948 EYSLTlEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER-YDFLTAQKE 1010
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-1117 |
1.43e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 331 NEKVKHLEDTLKELESQhsilkdevtyMNNLKLKLEmdaqhiKDEFFHEREDLEFKINELLLAKEeqgcvIEKLKSELAG 410
Cdd:TIGR02168 185 RENLDRLEDILNELERQ----------LKSLERQAE------KAERYKELKAELRELELALLVLR-----LEELREELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 411 LNKQfcytVEQHNREVQSLKEQHQKEISELNETFLSDSEKEKltlmfEIQGLKEQCENLQQEKQEAILNYESLREIMEIL 490
Cdd:TIGR02168 244 LQEE----LKEAEEELEELTAELQELEEKLEELRLEVSELEE-----EIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 491 QTELgESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKN--LQEKN 568
Cdd:TIGR02168 315 ERQL-EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkvAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 569 GVYLLS--LSQRDTMLKELEGKINSLTEEKDDFINKLKNSheEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVN 646
Cdd:TIGR02168 394 QIASLNneIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 647 ELTGGLEETLKEKDQNDQKLEKLmvqmKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVflsQKEDVILKEhiTQ 726
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV---DEGYEAAIE--AA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 727 LEKKLQLMVEEQDN-----LNKLLENE-----------------QVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQ 784
Cdd:TIGR02168 543 LGGRLQAVVVENLNaakkaIAFLKQNElgrvtflpldsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 785 A---VGESLAKINE------------------------------EKCNLAFQRDEKVLELEKEIKCLQE---ESVVQCEE 828
Cdd:TIGR02168 623 GgvlVVDDLDNALElakklrpgyrivtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEkiaELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 829 LKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHEN 908
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 909 LKPLLEQkELRDRRAELILLKDSLakspsvkndplssvKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKET 988
Cdd:TIGR02168 783 EIEELEA-QIEQLKEELKALREAL--------------DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 989 QTVKEELESLRSEKDQLSASMRDLIQGAESyknLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDN 1068
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1677531374 1069 EDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEH 1117
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| GRIP |
pfam01465 |
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in ... |
1613-1656 |
7.72e-12 |
|
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi. The GRIP domain contains a completely conserved tyrosine residue. At least some of these domains have been shown to bind to GTPase Arl1, see structures in.
Pssm-ID: 460221 [Multi-domain] Cd Length: 44 Bit Score: 61.22 E-value: 7.72e-12
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1677531374 1613 AANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKL 1656
Cdd:pfam01465 1 GANLEYLKNVLLQFLESKESSERKQLLPVIATLLKFSPEEEQKI 44
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
41-749 |
9.74e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 9.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 41 IQKAKSRCTELEKEIEELRSKpVTEGTGDI------IKALTERLDALLLEKAETEQQCLSLKKENIKMKQEVEDSVTKMG 114
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKE-LYALANEIsrleqqKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 115 DA---HKELEQSHINYVKEIENLKN---ELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLkfqNNSEDNVKKLQEEIE 188
Cdd:TIGR02168 348 ELkeeLESLEAELEELEAELEELESrleELEEQLETLRSKVAQLELQIASLNNEIERLEARL---ERLEDRRERLQQEIE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 189 KIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQE---EVKELMCQIEASAKE 265
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqaRLDSLERLQENLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 266 HEAEIN-KLNELKENLVKQCEASEKNIQKKYECELEN-LRKA-----TSNANQDNQICSILLQEN----TFVEQVV---N 331
Cdd:TIGR02168 505 SEGVKAlLKNQSGLSGILGVLSELISVDEGYEAAIEAaLGGRlqavvVENLNAAKKAIAFLKQNElgrvTFLPLDSikgT 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 332 EKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIkdeffHEREDLEFKINelLLAKEEQGCVIEKLKSELAGL 411
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV-----LVVDDLDNALE--LAKKLRPGYRIVTLDGDLVRP 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 412 nkqfCYTVEQHNREVQSLKEQHQKEISELNEtflsdsekekltlmfEIQGLKEQCENLQQEKQEAILNYESLREIMEILQ 491
Cdd:TIGR02168 658 ----GGVITGGSAKTNSSILERRREIEELEE---------------KIEELEEKIAELEKALAELRKELEELEEELEQLR 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 492 TELGEsagkISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVY 571
Cdd:TIGR02168 719 KELEE----LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 572 LLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGG 651
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 652 LEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQkedviLKEHITQLEKKL 731
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR-----IDNLQERLSEEY 949
|
730
....*....|....*...
gi 1677531374 732 QLMVEEQDNLNKLLENEQ 749
Cdd:TIGR02168 950 SLTLEEAEALENKIEDDE 967
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
915-1255 |
2.28e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 915 QKELRDRRAELILLKDslakspsvkndplssvKELEEKIENLEKECKEKEEKINkiklvavKAKKELDSSRKETQTVKEE 994
Cdd:COG1196 219 KEELKELEAELLLLKL----------------RELEAELEELEAELEELEAELE-------ELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 995 LESLRSEKDQLSASMRDLIQgaesyknlllEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLAR 1074
Cdd:COG1196 276 LEELELELEEAQAEEYELLA----------ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1075 IETLQSNAKLLEVQILEVQRAKAmvdkELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELvkkdaqq 1154
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALL----EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE------- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1155 ttlmnmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELAD 1234
Cdd:COG1196 415 ------RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340
....*....|....*....|.
gi 1677531374 1235 SKQAETDHLILQASLKGELEA 1255
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEG 509
|
|
| Grip |
smart00755 |
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245; |
1614-1659 |
3.49e-10 |
|
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245;
Pssm-ID: 197860 Cd Length: 46 Bit Score: 56.84 E-value: 3.49e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1677531374 1614 ANLEYLKNVLLQFIFLKPgSERERLLPVINTMLQLSPEEKGKLAAV 1659
Cdd:smart00755 2 ANFEYLKNVLLQFLTLRE-SERETLLPVISTVLQLSPEEMQKLLEV 46
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-748 |
9.90e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 9.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 28 EDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKPVTEGTGDIiKALTERLDALLLEKAETEQQCLSLKKEnikmKQEVE 107
Cdd:TIGR02168 192 EDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRL-EELREELEELQEELKEAEEELEELTAE----LQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 108 DSVTKMGDAHKELEQSHINYVKEIENLKNELmavrSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEI 187
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELYALANEI----SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 188 EKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIiEANSQHYQKNINSLQEELLQLKA------------------IHQ 249
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEEL-EEQLETLRSKVAQLELQIASLNNeierlearlerledrrerLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 250 EEVKELMCQIEASAKEHEAEINKLNELKENLVKQCE---ASEKNIQKKYECELENLRKATSNANQDNQICSIL--LQENt 324
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELErleEALEELREELEEAEQALDAAERELAQLQARLDSLerLQEN- 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 325 fvEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEM------------DAQHIKDEFFHEREDLEFKINELLL 392
Cdd:TIGR02168 501 --LEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavvveNLNAAKKAIAFLKQNELGRVTFLPL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 393 ----AKEEQGCVIEKLKSE--LAGLNKQFCYTVEQHNREVQSL-----------KEQHQKEISELNETFLSDsEKEKLTL 455
Cdd:TIGR02168 579 dsikGTEIQGNDREILKNIegFLGVAKDLVKFDPKLRKALSYLlggvlvvddldNALELAKKLRPGYRIVTL-DGDLVRP 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 456 MFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQqasdVHELQQKLRTAFTEKDALLE 535
Cdd:TIGR02168 658 GGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE----LEQLRKELEELSRQISALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 536 TVNRLQGENEKLLSQ----QELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKIN-------SLTEEKDDFINKLK 604
Cdd:TIGR02168 734 DLARLEAEVEQLEERiaqlSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEqlkeelkALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 605 NSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLS 684
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1677531374 685 AEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHITQLE---KKLQLMVEEQDNLNKLLENE 748
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnLQERLSEEYSLTLEEAEALE 960
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
89-731 |
1.43e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 89 EQQCLSLKKENIKMK---QEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELMAVRSkysedkanLQKQLEEAMNTQLe 165
Cdd:pfam15921 102 EKQKFYLRQSVIDLQtklQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC--------LKEDMLEDSNTQI- 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 166 lsEQLKFQNNSEDNVkklQEEIEKIRPGFEE---QILYLQKQLDATTDEKKET-VTQLQNIIEANSQHYQKNINSLQEEL 241
Cdd:pfam15921 173 --EQLRKMMLSHEGV---LQEIRSILVDFEEasgKKIYEHDSMSTMHFRSLGSaISKILRELDTEISYLKGRIFPVEDQL 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 242 LQLKAIHQEEVKELMCQ----IEASAKEHEAEINKLNELKENLVKQCEAseknIQKKYECELENLRkatsnaNQDNQICS 317
Cdd:pfam15921 248 EALKSESQNKIELLLQQhqdrIEQLISEHEVEITGLTEKASSARSQANS----IQSQLEIIQEQAR------NQNSMYMR 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 318 ILLQENTFVEQV---VNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAK 394
Cdd:pfam15921 318 QLSDLESTVSQLrseLREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEK 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 395 EE----------QGCVIEKLKSELAGLN---KQFCYTVEQHNREVQSLKEQHQKEISELNETFLSDSekeklTLMFEIQG 461
Cdd:pfam15921 398 EQnkrlwdrdtgNSITIDHLRRELDDRNmevQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS-----SLTAQLES 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 462 LKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKI---SQEFESMKQQQASDVHELQ----------------QK 522
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIeatNAEITKLRSRVDLKLQELQhlknegdhlrnvqtecEA 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 523 LRTAFTEKDALLETVnRLQGENEKLL---------SQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSL- 592
Cdd:pfam15921 553 LKLQMAEKDKVIEIL-RQQIENMTQLvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLe 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 593 --------------------TEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQ--------YNSELEQK 644
Cdd:pfam15921 632 lekvklvnagserlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNklkmqlksAQSELEQT 711
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 645 VNELTG-------------GLEETLKEK----DQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRD 707
Cdd:pfam15921 712 RNTLKSmegsdghamkvamGMQKQITAKrgqiDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
730 740
....*....|....*....|....
gi 1677531374 708 LEVFLSQKEDviLKEHITQLEKKL 731
Cdd:pfam15921 792 LEVLRSQERR--LKEKVANMEVAL 813
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
504-1361 |
1.80e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 504 EFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTiknlqeKNGVYLLSLSQRDTMLK 583
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY------EGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 584 ELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYN-SELEQKVNELTGGLEETLKEKDQN 662
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 663 DQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDV-----ILKEHITQLEKKLQLMVEE 737
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 738 QDNLNKllenEQVQKLFVKTQLYGFLKEMGSEVsEDSEEKdvVNVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEIKC 817
Cdd:TIGR02169 401 INELKR----ELDRLQEELQRLSEELADLNAAI-AGIEAK--INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 818 LQEEsvvqceelkslLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNL------LIQVEEVSQTCSK 891
Cdd:TIGR02169 474 LKEE-----------YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 892 SEIHNEKEKCFIKEHENLKPLLE-QKELRDRRAELILL-------KDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEK 963
Cdd:TIGR02169 543 VAAGNRLNNVVVEDDAVAKEAIElLKRRKAGRATFLPLnkmrderRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGD 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 964 EEKINKIKLvavkAKKELDSSRKETqtvkeeLESLRSEKDQL----SASMRDLIQGAESYKNLLLEYEKQSEQLDVEKER 1039
Cdd:TIGR02169 623 TLVVEDIEA----ARRLMGKYRMVT------LEGELFEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1040 A----NNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVD---KELEAEKLQKEQ 1112
Cdd:TIGR02169 693 LqselRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselKELEARIEELEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1113 KIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDA------QQTTLMNMEIADYERLMKELNQKLTNKNNKIEDL 1186
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEArlreieQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1187 EQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDhlilqasLKGELEASQQQVEVYKIQ 1266
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE-------LEAQIEKKRKRLSELKAK 925
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1267 LAEITSEKHKIHEHLKTSAEQHQRTLSA--YQQRVTALQEECRAAKAEQATVTSEFESYKVRVhNVLKQQKNKSMsqaet 1344
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEELSLedVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL-DELKEKRAKLE----- 999
|
890
....*....|....*..
gi 1677531374 1345 egakQEREHLEMLIDQL 1361
Cdd:TIGR02169 1000 ----EERKAILERIEEY 1012
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
288-1123 |
2.14e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 59.68 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 288 EKNIQKKYECELENLRKATSNANQDNQicSILLQENTFVEQVvNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEM 367
Cdd:TIGR01612 531 DQNIKAKLYKEIEAGLKESYELAKNWK--KLIHEIKKELEEE-NEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKE 607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 368 DAQHIKDEFFHEREDLEFK---------INEllLAKEEQGCVIEKLKSE-------LAGLNKQFCYTVEQHNREVQSLKE 431
Cdd:TIGR01612 608 KIKNISDKNEYIKKAIDLKkiiennnayIDE--LAKISPYQVPEHLKNKdkiystiKSELSKIYEDDIDALYNELSSIVK 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 432 QHQKEISElNETFLS------DSEKEKLTLMfEIQGLKEQCENLQQEKQEAIlnyESLREIMEILQTELGESAGKISQEF 505
Cdd:TIGR01612 686 ENAIDNTE-DKAKLDdlkskiDKEYDKIQNM-ETATVELHLSNIENKKNELL---DIIVEIKKHIHGEINKDLNKILEDF 760
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 506 ESMKQQQASDVHELQQklrtaftEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDtmlKEL 585
Cdd:TIGR01612 761 KNKEKELSNKINDYAK-------EKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKE---DEI 830
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 586 EGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYN--SELEQKVNELTGGLEET---LKEKD 660
Cdd:TIGR01612 831 FKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDklNDYEKKFNDSKSLINEInksIEEEY 910
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 661 QNDQKLEKLMVQMKVLSEDKEvlsaEVKSLYEENNKLSSEKKQ------LSRDLEVFLSQKEDVILKEHITQLEK---KL 731
Cdd:TIGR01612 911 QNINTLKKVDEYIKICENTKE----SIEKFHNKQNILKEILNKnidtikESNLIEKSYKDKFDNTLIDKINELDKafkDA 986
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 732 QLMVEEQDN------LNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEE--KDVVNVLQAVGESLAKINEEKCNLAFQ 803
Cdd:TIGR01612 987 SLNDYEAKNnelikyFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDanKNIPNIEIAIHTSIYNIIDEIEKEIGK 1066
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 804 RDEKvleLEKEIKCLQEESVVQCEELKSLLRDY------EQEKVLLRKELEEIQSEKEALQ-------SDLLEMKNANEK 870
Cdd:TIGR01612 1067 NIEL---LNKEILEEAEINITNFNEIKEKLKHYnfddfgKEENIKYADEINKIKDDIKNLDqkidhhiKALEEIKKKSEN 1143
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 871 TRLENQNLLIQVEEVSQTCskseIHNEKEKCFIKEHENLKPLLEQK-----ELRDRRAELILLKDSLAKSPSVKNDPLSS 945
Cdd:TIGR01612 1144 YIDEIKAQINDLEDVADKA----ISNDDPEEIEKKIENIVTKIDKKkniydEIKKLLNEIAEIEKDKTSLEEVKGINLSY 1219
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 946 VKELE----EKIENLEKECKEKEEKINkiklvavKAKKELDSSRKETQtvkeELESLRSEKDQLSASMRDLIQGAESYKN 1021
Cdd:TIGR01612 1220 GKNLGklflEKIDEEKKKSEHMIKAME-------AYIEDLDEIKEKSP----EIENEMGIEMDIKAEMETFNISHDDDKD 1288
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1022 LLLEYEKQSEQLDVEKERA------NNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSnakllevqILEVQRA 1095
Cdd:TIGR01612 1289 HHIISKKHDENISDIREKSlkiiedFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYN--------ILKLNKI 1360
|
890 900
....*....|....*....|....*...
gi 1677531374 1096 KAMVDKELEAEKlqkeqKIKEHATTVNE 1123
Cdd:TIGR01612 1361 KKIIDEVKEYTK-----EIEENNKNIKD 1383
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
96-958 |
3.05e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 96 KKENIKMKQEVEDSVTKMGDAHKELE-------------QSHINYVKEIENLKNELMAVRSKYSEDKANLQKQLEEAMNT 162
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELErqlkslerqaekaERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 163 QLElseqlkfqnNSEDNVKKLQEEIEKIRPGF---EEQILYLQKQLDATTDEKKETVTQLQnIIEANSQHYQKNINSLQE 239
Cdd:TIGR02168 254 ELE---------ELTAELQELEEKLEELRLEVselEEEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 240 ELLQLKAiHQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEkNIQKKYECELENLRKAtsnanqdnqICSIL 319
Cdd:TIGR02168 324 QLEELES-KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE-SRLEELEEQLETLRSK---------VAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 320 LQENtfveqVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIK-DEFFHEREDLEFKINELLLAKEEQG 398
Cdd:TIGR02168 393 LQIA-----SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELR 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 399 CVIEKLKSELAGLNKQFcYTVEQHNREVQSLKEQHQKEISELNETFLSDSEKEkltlmfEIQGLKEQCENLQQEKQEAIL 478
Cdd:TIGR02168 468 EELEEAEQALDAAEREL-AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS------GILGVLSELISVDEGYEAAIE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 479 NYeslreIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELE 558
Cdd:TIGR02168 541 AA-----LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 559 NTIKNL--------QEKNGVYLLSLSQRDTMLKELEGKI----NSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILE 626
Cdd:TIGR02168 616 KALSYLlggvlvvdDLDNALELAKKLRPGYRIVTLDGDLvrpgGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 627 LGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSR 706
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 707 DLEVFLSQKEDviLKEHITQLEKKLQLMVEEQDNLNKLLENEQV---QKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNvl 783
Cdd:TIGR02168 776 ELAEAEAEIEE--LEAQIEQLKEELKALREALDELRAELTLLNEeaaNLRERLESLERRIAATERRLEDLEEQIEELS-- 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 784 qavgESLAKINEEKCNLAFQRDEkvleLEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLR---KELEEIQSEKEALQSD 860
Cdd:TIGR02168 852 ----EDIESLAAEIEELEELIEE----LESELEALLNERASLEEALALLRSELEELSEELReleSKRSELRRELEELREK 923
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 861 LLEMKNANEKTRLENQNLLIQV--------EEVSQTCSKSEIHNEKEKCFIKEHE---------NLKPLLEQKELRDRRA 923
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQERLseeysltlEEAEALENKIEDDEEEARRRLKRLEnkikelgpvNLAAIEEYEELKERYD 1003
|
890 900 910
....*....|....*....|....*....|....*
gi 1677531374 924 ELillkdslaksPSVKNDPLSSVKELEEKIENLEK 958
Cdd:TIGR02168 1004 FL----------TAQKEDLTEAKETLEEAIEEIDR 1028
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
627-1217 |
4.48e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 4.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 627 LGKKVEQTIQYNsELEQKVNELTggLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSR 706
Cdd:COG1196 205 LERQAEKAERYR-ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 707 DLEVflSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQAV 786
Cdd:COG1196 282 ELEE--AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 787 GESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKN 866
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 867 ANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRdRRAELILLKDSLAKSPSVKNdplsSV 946
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-LLLLLEAEADYEGFLEGVKA----AL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 947 KELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEK------------DQLSASMRDLIQ 1014
Cdd:COG1196 515 LLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflpldkiRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1015 GAESYKNLLLEYEKQSEQL------------DVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLL-ARIETLQSN 1081
Cdd:COG1196 595 GAIGAAVDLVASDLREADAryyvlgdtllgrTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1082 AKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQTTLMNME 1161
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1162 IADYERLMKELNQKLTNKNNKIEDLE----------QEIKIQKQ----KQETLQEEITSLQSSVQQYEEK 1217
Cdd:COG1196 755 ELPEPPDLEELERELERLEREIEALGpvnllaieeyEELEERYDflseQREDLEEARETLEEAIEEIDRE 824
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
129-718 |
5.27e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 5.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 129 KEIENLKNELMAvrskySEDKANLQKQLEEamntqlELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEqiLYLQKQLDAT 208
Cdd:PRK03918 176 RRIERLEKFIKR-----TENIEELIKEKEK------ELEEVLREINEISSELPELREELEKLEKEVKE--LEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 209 TDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKaihqEEVKELMcQIEASAKEHEaeinKLNELKENLVKQCEASE 288
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----EKVKELK-ELKEKAEEYI----KLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 289 KNIQKkYECELENLRKATSNANQDNqicsillqentfveqvvnEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMD 368
Cdd:PRK03918 314 KRLSR-LEEEINGIEERIKELEEKE------------------ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 369 AQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQfcytVEQHNREVQSLK--------------EQHQ 434
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE----IKELKKAIEELKkakgkcpvcgreltEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 435 KEISELNETFLSDSEKEKLTLMFEIQGLKEQCENLQQE--KQEAILNYESLREIMEILQTELG----ESAGKISQEFEsm 508
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELAEQLKELEEKLKkynlEELEKKAEEYE-- 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 509 kqqqasdvhELQQKLRTAFTEKDALLETVNRLQGENEKLLsqqelvpELENTIKNLQEKNGVYLLSLSQRD-TMLKELEG 587
Cdd:PRK03918 529 ---------KLKEKLIKLKGEIKSLKKELEKLEELKKKLA-------ELEKKLDELEEELAELLKELEELGfESVEELEE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 588 KINSLTEEKDDFInKLKNSHEEMdnfhkkcEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEEtlKEKDQNDQKLE 667
Cdd:PRK03918 593 RLKELEPFYNEYL-ELKDAEKEL-------EREEKELKKLEEELDKAFEELAETEKRLEELRKELEE--LEKKYSEEEYE 662
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1677531374 668 KLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDV 718
Cdd:PRK03918 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
17-1004 |
3.15e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.83 E-value: 3.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 17 TGKSKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKpvTEGTGDIIKALTERLDALLLEKAETEQQCLSLK 96
Cdd:TIGR01612 660 TIKSELSKIYEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSK--IDKEYDKIQNMETATVELHLSNIENKKNELLDI 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 97 KENIK--MKQEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELMAVRSKYSEDKANLQKQL-------EEAMNTQLELS 167
Cdd:TIGR01612 738 IVEIKkhIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQInidnikdEDAKQNYDKSK 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 168 EQLKFQNNSEDNVKKLQEEIEKIRPGFEEQI---LYLQKQLDATTDEKKETVTQLQNIIEansqhyqkniNSLQEELLQL 244
Cdd:TIGR01612 818 EYIKTISIKEDEIFKIINEMKFMKDDFLNKVdkfINFENNCKEKIDSEHEQFAELTNKIK----------AEISDDKLND 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 245 KAIHQEEVKELMCQIEASAKEHEAEINKLNELKENLvKQCEASEKNIQKKYECELENLRKATSNANQDNQICSILLQENT 324
Cdd:TIGR01612 888 YEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYI-KICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKD 966
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 325 FVEQVVNEKVKHLEDTLKE--LESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIE 402
Cdd:TIGR01612 967 KFDNTLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIE 1046
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 403 -----KLKSELAGLNKQFCYTVEQHNREVQSLKEQHQKEISELNE-----TFLSDSEKEKLTLMFEIQGLKEQCENLQQE 472
Cdd:TIGR01612 1047 iaihtSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEklkhyNFDDFGKEENIKYADEINKIKDDIKNLDQK 1126
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 473 KQEAILNYESLREIMEILQTELGESAGKISQEFE-SMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQ 551
Cdd:TIGR01612 1127 IDHHIKALEEIKKKSENYIDEIKAQINDLEDVADkAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDK 1206
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 552 ELVPELENTikNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDF-----------------------INKLKNSHE 608
Cdd:TIGR01612 1207 TSLEEVKGI--NLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLdeikekspeienemgiemdikaeMETFNISHD 1284
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 609 EMDNFHKKCEREERLILELGKKVEQTIQYNSElEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMK------VLSEDKEV 682
Cdd:TIGR01612 1285 DDKDHHIISKKHDENISDIREKSLKIIEDFSE-ESDINDIKKELQKNLLDAQKHNSDINLYLNEIAniynilKLNKIKKI 1363
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 683 LS--AEVKSLYEENNKlsSEKKQLSRDLEVFLSQKEDVILKEHITQLEKKLqlmveEQDNLNKLLENEQVQKLFV---KT 757
Cdd:TIGR01612 1364 IDevKEYTKEIEENNK--NIKDELDKSEKLIKKIKDDINLEECKSKIESTL-----DDKDIDECIKKIKELKNHIlseES 1436
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 758 QLYGFLKemgsevSEDSEEKDVV----NVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEI----KCLQE--ESVVQCE 827
Cdd:TIGR01612 1437 NIDTYFK------NADENNENVLllfkNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIdkskGCKDEadKNAKAIE 1510
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 828 ELKSLLRDYEQE-KVLLRKELEeiqsekealqsdlLEMKNANEKTRLENQNLLIQVEEVSQT------CSKSEIHNEKEK 900
Cdd:TIGR01612 1511 KNKELFEQYKKDvTELLNKYSA-------------LAIKNKFAKTKKDSEIIIKEIKDAHKKfileaeKSEQKIKEIKKE 1577
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 901 CFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVK---NDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKA 977
Cdd:TIGR01612 1578 KFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKkkiNDCLKETESIEKKISSFSIDSQDTELKENGDNLNSLQE 1657
|
1050 1060 1070
....*....|....*....|....*....|....*
gi 1677531374 978 --------KKELDSSRKETQTVKEELESLRSEKDQ 1004
Cdd:TIGR01612 1658 fleslkdqKKNIEDKKKELDELDSEIEKIEIDVDQ 1692
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
991-1477 |
7.03e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 7.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 991 VKEELESLRSEKDQLSASMrdLIQGAESYKNLLLEYEKQ----SEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINS 1066
Cdd:pfam15921 243 VEDQLEALKSESQNKIELL--LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1067 DNEDLLARIET-LQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQ-KTMQE 1144
Cdd:pfam15921 321 DLESTVSQLRSeLREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSlEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1145 LELVKKDAQQTTLM----------NMEIADYERLMKELNQKLTNKnnkiedLEQEIKIQKQKQETLqEEITSLQSSVQQY 1214
Cdd:pfam15921 401 KRLWDRDTGNSITIdhlrrelddrNMEVQRLEALLKAMKSECQGQ------MERQMAAIQGKNESL-EKVSSLTAQLEST 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1215 EEKNTKIKQLLVKTKKELADSKQAETDhlilqasLKGELEASQQQVEVYKiqlAEITSEKHKIHehLKTSAEQHQRTLSA 1294
Cdd:pfam15921 474 KEMLRKVVEELTAKKMTLESSERTVSD-------LTASLQEKERAIEATN---AEITKLRSRVD--LKLQELQHLKNEGD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1295 YQQRVtalQEECRAAKAEQATvtsefesyKVRVHNVLKQQKNKSMSQAETEGakqeREHLEMLIDqlKIKLQDSQNNLQI 1374
Cdd:pfam15921 542 HLRNV---QTECEALKLQMAE--------KDKVIEILRQQIENMTQLVGQHG----RTAGAMQVE--KAQLEKEINDRRL 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1375 NVSELQTLQSEHDTLLerhnKMLQETVSKEAELREKLCSIQSENMM----MKSEHTQTVSQ----------LTSQNEVLR 1440
Cdd:pfam15921 605 ELQEFKILKDKKDAKI----RELEARVSDLELEKVKLVNAGSERLRavkdIKQERDQLLNEvktsrnelnsLSEDYEVLK 680
|
490 500 510
....*....|....*....|....*....|....*..
gi 1677531374 1441 NSFRDQvrhlQEEHRKTVETLQQQLSKMEAQLFQLKN 1477
Cdd:pfam15921 681 RNFRNK----SEEMETTTNKLKMQLKSAQSELEQTRN 713
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
202-1012 |
1.16e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 202 QKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELkENLV 281
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL-QNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 282 KQCEAS---EKNIQKKYECELENLRKAT-SNANQDNQICSILLQentfVEQVVNEKVkHLEDTLKELEsqhsiLKDEVTY 357
Cdd:pfam15921 152 HELEAAkclKEDMLEDSNTQIEQLRKMMlSHEGVLQEIRSILVD----FEEASGKKI-YEHDSMSTMH-----FRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 358 MNNLKLKLEMDAQHIKDEFFHEREDLEfkinelLLAKEEQGcvieklKSELaglnkqfcyTVEQHNREVQSLKEQHQKEI 437
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQLE------ALKSESQN------KIEL---------LLQQHQDRIEQLISEHEVEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 438 SELNETfLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESlreIMEILQTELGESAGKISQEFESMKQQQASDVH 517
Cdd:pfam15921 281 TGLTEK-ASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLES---TVSQLRSELREAKRMYEDKIEELEKQLVLANS 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 518 ELQQklrtAFTEKDALLETVNRLQGENEKLLSQQElVPELENTIKNLQEKNgvyllsLSQRDTMlkelegkiNSLTeekd 597
Cdd:pfam15921 357 ELTE----ARTERDQFSQESGNLDDQLQKLLADLH-KREKELSLEKEQNKR------LWDRDTG--------NSIT---- 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 598 dfINKLKnshEEMDNFHKKCEREERLilelgkkveqtiqynseLEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLS 677
Cdd:pfam15921 414 --IDHLR---RELDDRNMEVQRLEAL-----------------LKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 678 EDKEVLSAEVKSLYEENNKLSSEKKQLSrDLEVFLSQKEDVI--LKEHITQLEKKLQLMVEEQDNLN---KLLENEQVQK 752
Cdd:pfam15921 472 STKEMLRKVVEELTAKKMTLESSERTVS-DLTASLQEKERAIeaTNAEITKLRSRVDLKLQELQHLKnegDHLRNVQTEC 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 753 LFVKTQLYGFLKEMgsevseDSEEKDVVNVLQAVGE---SLAKINEEKCNLAFQRDEKVLELeKEIKCLQEESVVQCEEL 829
Cdd:pfam15921 551 EALKLQMAEKDKVI------EILRQQIENMTQLVGQhgrTAGAMQVEKAQLEKEINDRRLEL-QEFKILKDKKDAKIREL 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 830 KSLLRDYEQEKVLL-------RKELEEIQSEKEALQSDLL----EMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEK 898
Cdd:pfam15921 624 EARVSDLELEKVKLvnagserLRAVKDIKQERDQLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 899 EKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSpsvkndplSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAK 978
Cdd:pfam15921 704 AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKR--------GQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLS 775
|
810 820 830
....*....|....*....|....*....|....
gi 1677531374 979 KELDSSRKETQTVKEELESLRSEKDQLSASMRDL 1012
Cdd:pfam15921 776 QELSTVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
430-1217 |
1.62e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 430 KEQHQKEISELnETFLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESL-REIMEILQTELGESAGKISQeFESM 508
Cdd:TIGR02169 232 KEALERQKEAI-ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIAS-LERS 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 509 KQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEkllSQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGK 588
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 589 INSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEqtiqynsELEQKVNELTGGLEETLKEKDQNDQKLEK 668
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA-------GIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 669 LmvqmkvlSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEvflsqkedvilkehitQLEKKLQLMVEEQdnlnklLENE 748
Cdd:TIGR02169 460 L-------AADLSKYEQELYDLKEEYDRVEKELSKLQRELA----------------EAEAQARASEERV------RGGR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 749 QVQKLFVKTQ--LYGFLKEMGS---------EVSEDSEEKDVVNVLQAVGESLAKINEEK--CNLAFQRDEKVLELEKEI 815
Cdd:TIGR02169 511 AVEEVLKASIqgVHGTVAQLGSvgeryataiEVAAGNRLNNVVVEDDAVAKEAIELLKRRkaGRATFLPLNKMRDERRDL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 816 KCLQEESVVqceELKSLLRDYEQE-----KVLLRKEL--EEIQSEKE--------ALQSDLLE----MKNANEKTRLENQ 876
Cdd:TIGR02169 591 SILSEDGVI---GFAVDLVEFDPKyepafKYVFGDTLvvEDIEAARRlmgkyrmvTLEGELFEksgaMTGGSRAPRGGIL 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 877 NLLIQVEEVSQTCSK-SEIHNEKEKCFIKEHENLKPLLE--------QKELRDRRAELILLKDSLAKSPSVKNDPLSSVK 947
Cdd:TIGR02169 668 FSRSEPAELQRLRERlEGLKRELSSLQSELRRIENRLDElsqelsdaSRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 948 ELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDS-----SRKETQTVKEELESLRSEKDQLSASMRDLIQ--GAESYK 1020
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQklNRLTLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1021 NLLLEYEKQSEQLDVE--KERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKam 1098
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIdlKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI-- 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1099 vdKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQTTLMNMEIadyerlmkelnQKLTN 1178
Cdd:TIGR02169 906 --EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI-----------RALEP 972
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 1677531374 1179 KNNK-IEDLEQEIKIQ---KQKQETLQEEITSLQSSVQQYEEK 1217
Cdd:TIGR02169 973 VNMLaIQEYEEVLKRLdelKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
788-1355 |
2.13e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 788 ESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDllEMKNA 867
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD--ELKKA 1286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 868 NEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVK 947
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 948 ELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEElESLRSEKDQLSASMRDLIQGAESYKNllLEYE 1027
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKKKADEAKKK--AEEA 1443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1028 KQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARiETLQSNAKLLEVQILEVQRAKAMVDKELEAEK 1107
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1108 LQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKdAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLE 1187
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK-AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1188 QEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQ---AETDHLILQASLKGELEASQQQVEVYK 1264
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEElkkAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1265 IQLAE--ITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQ--EECRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMS 1340
Cdd:PTZ00121 1682 KAEEDekKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKkaEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570
....*....|....*
gi 1677531374 1341 QAETEGAKQEREHLE 1355
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKE 1776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
401-721 |
2.67e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 401 IEKLKSELAGLnKQFCYTVEQHNREVQSLKEQHQKEISEL-NETFLSDSEKEKLT-----LMFEIQGLKEQCENLQQEKQ 474
Cdd:TIGR02169 683 LEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKerleeLEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 475 EAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVN-RLQGENEKLLSQQEL 553
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTlEKEYLEKEIQELQEQ 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 554 VPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEK-------DDFINKLKNSHEEMDNFHKKCEREERLILE 626
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdlkkerDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 627 LGKKVEQTIQYNSELEQKVNELTGGLEETLKEKD--QNDQKLEKLM-----VQMKVLSEDKEVLsAEVKSLYEENNKLSS 699
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDvqAELQRVEEEIralepVNMLAIQEYEEVL-KRLDELKEKRAKLEE 1000
|
330 340
....*....|....*....|..
gi 1677531374 700 EKKQLSRDLEVFLSQKEDVILK 721
Cdd:TIGR02169 1001 ERKAILERIEEYEKKKREVFME 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
941-1324 |
3.87e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 3.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 941 DPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTvKEELESLRSEKDQLSASMrdliqgaesyk 1020
Cdd:TIGR02169 160 DEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREYEGYE----------- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1021 nLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIEtlqsnaKLLEVQILEVQRAKAmvd 1100
Cdd:TIGR02169 228 -LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK------DLGEEEQLRVKEKIG--- 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1101 kELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELElvkkdaQQTTLMNMEIADYERLMKELNQKLTNKN 1180
Cdd:TIGR02169 298 -ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE------REIEEERKRRDKLTEEYAELKEELEDLR 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1181 NKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQV 1260
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1677531374 1261 EVYKIQLAEITSEKHKIHEHLktsaEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYK 1324
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQEL----YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
27-566 |
5.03e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 5.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 27 KEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSK-PVTEGTGDIIKALTERLDALLLEKAETEQQCLSLKKENIKMK-- 103
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSElPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEek 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 104 -QEVEDSVTKMGDAHKELEQ--SHINYVKEIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNV 180
Cdd:PRK03918 261 iRELEERIEELKKEIEELEEkvKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 181 KKLQEEIEKIRPGFEEQILYLQKqldatTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQIE 260
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHEL-----YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 261 ASAKEHEAEINKLNELKENLVK-------QCEASEKNIQKKYECELENLRKATSNAnqdNQICSILLQENTFVEQVVNE- 332
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAKGKcpvcgreLTEEHRKELLEEYTAELKRIEKELKEI---EEKERKLRKELRELEKVLKKe 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 333 ----KVKHLEDTLKELESQ-HSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEfKINELLLAKEEQGCVIEKLKSE 407
Cdd:PRK03918 493 seliKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 408 LAGLNKQF----CYTVEQHNREVQSLKEQHQKEISelnetfLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESL 483
Cdd:PRK03918 572 LAELLKELeelgFESVEELEERLKELEPFYNEYLE------LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 484 REIMEILQTELG-ESAGKISQEFESMKQQQASdvheLQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIK 562
Cdd:PRK03918 646 RKELEELEKKYSeEEYEELREEYLELSRELAG----LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
....
gi 1677531374 563 NLQE 566
Cdd:PRK03918 722 RVEE 725
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1173-1382 |
7.87e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 7.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1173 NQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAetdhlilQASLKGE 1252
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE-------LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1253 LEASQQQVEVYKIQLAE--ITSEKHKIHEHLK-----TSAEQHQRTLSAYQQRVTALQ---EECRAAKAEQATVTSEFES 1322
Cdd:COG4942 92 IAELRAELEAQKEELAEllRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1323 YKVRVHNVLKQQKNKsmsQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTL 1382
Cdd:COG4942 172 ERAELEALLAELEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
460-1056 |
1.84e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 460 QGLKEQCENLQQEkqEAILNYESLREIMEILQTELgesagkisQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNR 539
Cdd:COG1196 216 RELKEELKELEAE--LLLLKLRELEAELEELEAEL--------EELEAELEELEAELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 540 LQGENEKLLSQQElvpELENTIKNLQEKngvyllsLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCER 619
Cdd:COG1196 286 AQAEEYELLAELA---RLEQDIARLEER-------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 620 EERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSS 699
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 700 EKKQLSRDLEVFLSQKEDviLKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDV 779
Cdd:COG1196 436 EEEEEEEALEEAAEEEAE--LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 780 VNVLQAVGESLAKINEEKCNLAFQRDEKVLELEkeikcLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQS 859
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA-----ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 860 DLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEkekcfIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVK 939
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT-----LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 940 NDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESY 1019
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590
....*....|....*....|....*....|....*..
gi 1677531374 1020 KNLLLEYEKQSEQLDVEKERANnfEHRIEDLTRQLRN 1056
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEEL--ERELERLEREIEA 778
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
588-891 |
1.99e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 588 KINSLTEEKDDFINKLKNSHEemdnFHKkCEREERLILELGKKVEQtiqYNSELEQKVNELTGGLE-ETLKEKDQNDQKL 666
Cdd:PRK05771 10 LIVTLKSYKDEVLEALHELGV----VHI-EDLKEELSNERLRKLRS---LLTKLSEALDKLRSYLPkLNPLREEKKKVSV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 667 EKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLS---RDLEVFLSQKEDVIL---KEHITQLEKKLQlmvEEQDN 740
Cdd:PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEqeiERLEPWGNFDLDLSLllgFKYVSVFVGTVP---EDKLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 741 LNKLLENEQVqklfvktqlygflkemgSEVSEDSEEKDVVNVLQAVgESLAKINEEKCNLAFQRDEkvlelekeikcLQE 820
Cdd:PRK05771 159 ELKLESDVEN-----------------VEYISTDKGYVYVVVVVLK-ELSDEVEEELKKLGFERLE-----------LEE 209
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1677531374 821 EsvvqcEELKSLLRDYEQEkvllrkeLEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSK 891
Cdd:PRK05771 210 E-----GTPSELIREIKEE-------LEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSK 268
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
331-752 |
2.30e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 331 NEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKdEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAG 410
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 411 LNKQFCYTVEQHNREVQSL---KEQHQKEISELNETFLSDSEKEKltlmfEIQGLKEQCENLQQEKQEAILNY-----ES 482
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQnkiKKQLSEKQKELEQNNKKIKELEK-----QLNQLKSEISDLNNQKEQDWNKElkselKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 483 LREIMEILQTELGESAGKISQEFESMKQ--QQASDVHELQQKLRTAFTEKDALLETVNR-LQGENEKLLSQQELVPELEN 559
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQlkKELTNSESENSEKQRELEEKQNEIEKLKKeNQSYKQEIKNLESQINDLES 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 560 TIKNLQEKNgvyllslSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNS 639
Cdd:TIGR04523 399 KIQNQEKLN-------QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 640 ELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSR---DLEVFLSQKE 716
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESkisDLEDELNKDD 551
|
410 420 430
....*....|....*....|....*....|....*.
gi 1677531374 717 DVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQK 752
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
150-1006 |
3.02e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 150 ANLQKQLEEAMNTQLELSEQLKfQNNSEDNVKKLQEEIEKIRpgFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQH 229
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLA-ELIIDLEELKLQELKLKEQ--AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 230 YQKNINSLQEELLQLKAIhQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEKNIQKKYECELENLRKATSNA 309
Cdd:pfam02463 242 LQELLRDEQEEIESSKQE-IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 310 NQDNQICSILLQENTFVEQVVNEKvkhledtlKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINE 389
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKEL--------KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 390 LLLAKEEQGCVIEKLKSELAGLNKQFCYTVEQHNREVQSLKEQHQKEISELNETFLSDSEKEKLTLMFEIQGLKEQCENL 469
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 470 QQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLS 549
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 550 QQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKK---CEREERLILE 626
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkraKVVEGILKDT 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 627 LGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEK-KQLS 705
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQReKEEL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 706 RDLEVFLSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQA 785
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 786 VGESLAKINEEKCNLafqrdEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMK 865
Cdd:pfam02463 793 EEKLKAQEEELRALE-----EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 866 NANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSS 945
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1677531374 946 VKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLS 1006
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLI 1008
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1095-1365 |
3.64e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1095 AKAMVDKELEAEKLQKEQKIKEHATTVNELEELQvqlqkqkkqlqktmqelelvKKDAQQTTLMNMEIADYERLMKELNQ 1174
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEE--------------------KALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1175 KLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYeEKNTKIKQLLvktkkeladSKQAETDHLILQASLKGELE 1254
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRL-GRQPPLALLL---------SPEDFLDAVRRLQYLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1255 ASQQQVEVYKIQLAEITSEKhkihEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLKQQ 1334
Cdd:COG4942 147 ARREQAEELRADLAELAALR----AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA 222
|
250 260 270
....*....|....*....|....*....|...
gi 1677531374 1335 KN--KSMSQAETEGAKQEREHLEMLIDQLKIKL 1365
Cdd:COG4942 223 EEleALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
421-746 |
4.14e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 48.36 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 421 QHNREVQSLKEQHQKEISElnETFLSDSEKEKLTLMfeIQGLKEQCENLQQEKQEAILNY-------ESLREIMEILQTE 493
Cdd:PLN02939 103 QRDEAIAAIDNEQQTNSKD--GEQLSDFQLEDLVGM--IQNAEKNILLLNQARLQALEDLekiltekEALQGKINILEMR 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 494 LGESAGKI---SQE---FESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEK 567
Cdd:PLN02939 179 LSETDARIklaAQEkihVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEER 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 568 NGVYLLSLSQRDTMLKELEGKINSLTEEKddfinkLKNSHEEMDNFHKKCEREERLILELGKKVEQ---TIQYNSELEQK 644
Cdd:PLN02939 259 VFKLEKERSLLDASLRELESKFIVAQEDV------SKLSPLQYDCWWEKVENLQDLLDRATNQVEKaalVLDQNQDLRDK 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 645 VNELtgglEETLKEKDQNDQKLEKLmvqmkvlsedkEVLSAEVKSLyEENNKLSSEkkqlsrdlevflsqkedvilkEHI 724
Cdd:PLN02939 333 VDKL----EASLKEANVSKFSSYKV-----------ELLQQKLKLL-EERLQASDH---------------------EIH 375
|
330 340
....*....|....*....|..
gi 1677531374 725 TQLEKKLQLMVEEQDNLNKLLE 746
Cdd:PLN02939 376 SYIQLYQESIKEFQDTLSKLKE 397
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1069-1423 |
4.23e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1069 EDLLARIETlqsNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELElv 1148
Cdd:TIGR02168 192 EDILNELER---QLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE-- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1149 kkdaQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKT 1228
Cdd:TIGR02168 267 ----EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1229 KKELAdskqaetdhlilqaSLKGELEASQQQVEvykiqlaeitsEKHKIHEHLKTSAEqhqrtlsAYQQRVTALQEECRA 1308
Cdd:TIGR02168 343 EEKLE--------------ELKEELESLEAELE-----------ELEAELEELESRLE-------ELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1309 AKAEQATVTSEFESYKVRvhnvlkqqknKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQ-NNLQINVSELQTLQSEHD 1387
Cdd:TIGR02168 391 LELQIASLNNEIERLEAR----------LERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLE 460
|
330 340 350
....*....|....*....|....*....|....*.
gi 1677531374 1388 TLLERHNKMLQETVSKEAELREKLCSIQSENMMMKS 1423
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-354 |
6.05e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 50 ELEKEIEELRSkpvtEGTGDIIKALTERLDALLLEKAETEQQCLSLKKENIKMKQEVEdsvtkmgdahkELEQSHINYVK 129
Cdd:COG1196 217 ELKEELKELEA----ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE-----------ELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 130 EIENLKNELMAVRSKYSE---DKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLD 206
Cdd:COG1196 282 ELEEAQAEEYELLAELARleqDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 207 ATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELmcQIEASAKEHEAEINKLNELKENLVKQCEA 286
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE--ALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677531374 287 SEKniqkkyecELENLRKATSNANQDNQICSILLQENTFVEQVVNEKVKHLEDTLKELESQHSILKDE 354
Cdd:COG1196 440 EEE--------ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
69-294 |
6.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 6.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 69 DIIKALTERLDALLLEKAETEQQCLSLKKENIKMKQEVEDSVTKMGDAHKELE--QSHINYV-KEIENLKNELMAVRSKY 145
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRalEQELAALeAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 146 SEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLdattdekkETVTQLQNIIEA 225
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--------AELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1677531374 226 NSQHYQKNINSLQEELLQLKAIhQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEKNIQKK 294
Cdd:COG4942 172 ERAELEALLAELEEERAALEAL-KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
76-840 |
6.73e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 6.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 76 ERLDALLLEKAETEQQCLSLKKEniKMKQEVEDSVTKMGDAHKELEQSHinyvKEIENLKNELMAVRSKYSEDKANLQKQ 155
Cdd:TIGR02169 211 ERYQALLKEKREYEGYELLKEKE--ALERQKEAIERQLASLEEELEKLT----EEISELEKRLEEIEQLLEELNKKIKDL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 156 LEEAMNT-QLELSEQLKFQNNSEDNVKKLQEEIEKIrpgfEEQilylQKQLDATTDEKKETVTQLQNIIEAnsqhYQKNI 234
Cdd:TIGR02169 285 GEEEQLRvKEKIGELEAEIASLERSIAEKERELEDA----EER----LAKLEAEIDKLLAEIEELEREIEE----ERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 235 NSLQEELLQLKAIHQEEVKELMcQIEASAKEHEAEINKLNELKENLVKQCEASEKNIQKKYEcELENLRKATSNANqdNQ 314
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELE-EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE-ELQRLSEELADLN--AA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 315 ICSILLQENTFVEQV--VNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEF--------FHEREDLE 384
Cdd:TIGR02169 429 IAGIEAKINELEEEKedKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELaeaeaqarASEERVRG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 385 FKINELLLAKEEQGCV--IEKLKS---------ELAGLNKQFCYTVEQHNREVQSLKEQHQKEISE-----LNETFLSDS 448
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHgtVAQLGSvgeryataiEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRatflpLNKMRDERR 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 449 EKEKL-----------------------------TLMFE-IQGLKEQCENLQQ--------EKQEAILNYESLREIMEIL 490
Cdd:TIGR02169 589 DLSILsedgvigfavdlvefdpkyepafkyvfgdTLVVEdIEAARRLMGKYRMvtlegelfEKSGAMTGGSRAPRGGILF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 491 QTELGESAGKISQEFESMKQQQASdvheLQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGV 570
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSS----LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 571 YLLSLSQR----DTMLKELEGKINSLTEEkddfINKLKnshEEMDNFHKKCEREErlILELGKKVEQTIQYNSELEQKVN 646
Cdd:TIGR02169 745 DLSSLEQEienvKSELKELEARIEELEED----LHKLE---EALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLR 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 647 ELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLS---RDLEVFLS--QKEDVILK 721
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalRDLESRLGdlKKERDELE 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 722 EHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEE---KDVVNVLQAVGESLAKInEEKC 798
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElslEDVQAELQRVEEEIRAL-EPVN 974
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 1677531374 799 NLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEK 840
Cdd:TIGR02169 975 MLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
572-862 |
9.25e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 9.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 572 LLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKkcereerLILELGKKVEQTIQynsELEQKVNELtgg 651
Cdd:PHA02562 159 LLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK-------NIEEQRKKNGENIA---RKQNKYDEL--- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 652 leetLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVF------------LSQKEDVI 719
Cdd:PHA02562 226 ----VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYekggvcptctqqISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 720 --LKEHITQLEKKLQLMVEEQDNLNKLleneqvqklfvktqlygflkemgseVSEDSEEKDVVNVLQAvgeslaKINEEK 797
Cdd:PHA02562 302 tkIKDKLKELQHSLEKLDTAIDELEEI-------------------------MDEFNEQSKKLLELKN------KISTNK 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1677531374 798 CNLAFQRDeKVLELEKEIKCLQEESVVQCEELKSLlrdyEQEKVLLRKELEEIQSEKEALQ--SDLL 862
Cdd:PHA02562 351 QSLITLVD-KAKKVKAAIEELQAEFVDNAEELAKL----QDELDKIVKTKSELVKEKYHRGivTDLL 412
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-610 |
1.26e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 27 KEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKpvtegtgdiIKALTERLDALLLEKAETEQQCLSLKKENIKMKQEV 106
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSK---------VAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 107 EDSVTKMGDAHKELEQSHINYVK-EIENLKNELMAVRskysEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQE 185
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEeELEELQEELERLE----EALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 186 EIEKIRPGfEEQILYLQKQLDA---------TTDEKKETVTQ------LQNIIEANSQHYQKNINSLQEELL-------- 242
Cdd:TIGR02168 500 NLEGFSEG-VKALLKNQSGLSGilgvlseliSVDEGYEAAIEaalggrLQAVVVENLNAAKKAIAFLKQNELgrvtflpl 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 243 -----QLKAIHQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQC-----EASEKNIQKKY----------------- 295
Cdd:TIGR02168 579 dsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddLDNALELAKKLrpgyrivtldgdlvrpg 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 296 -----------------ECELENLRKATSNANQDNQICSILLQENTFVEQVVNEKVKHLEDTLKELESQHSILKDEVTYM 358
Cdd:TIGR02168 659 gvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 359 NNLKLKLEMDAQHIKdeffHEREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQfcytVEQHNREVQSLKEQH---QK 435
Cdd:TIGR02168 739 EAEVEQLEERIAQLS----KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ----IEQLKEELKALREALdelRA 810
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 436 EISELNETF------LSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELgESAGKISQEFESMK 509
Cdd:TIGR02168 811 ELTLLNEEAanlrerLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL-EALLNERASLEEAL 889
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 510 QQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQElvpELENTIKNLQEK-NGVYLLSLSqrdtMLKELEGK 588
Cdd:TIGR02168 890 ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE---GLEVRIDNLQERlSEEYSLTLE----EAEALENK 962
|
650 660
....*....|....*....|..
gi 1677531374 589 INSLTEEKDDFINKLKNSHEEM 610
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKEL 984
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
500-1418 |
1.43e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 500 KISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKngvyLLSLSQRD 579
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR----LKEIEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 580 TMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQtiqynsELEQKVNELTGGLEETLKEK 659
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVR------EKERELVDCQRELEKLNKER 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 660 DQNDQKLEKLMVQMKVLSEDKEVLSAEVKS--LYEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHITQLEKKL--QLMV 735
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRArdSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTaaQLCA 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 736 EEQDNLNklLENEQVQKLFVKTQLYGFLKEMGSEV--SEDSEEKDVVNVLQAVGESLAKIneekcnlaFQRDEKVLELEK 813
Cdd:TIGR00606 416 DLQSKER--LKQEQADEIRDEKKGLGRTIELKKEIleKKQEELKFVIKELQQLEGSSDRI--------LELDQELRKAER 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 814 EIKCLQEESVVQCEE-----LKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQT 888
Cdd:TIGR00606 486 ELSKAEKNSLTETLKkevksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 889 CSKSEIHNEKEKCFIKEHEnlkpllEQKELRDRRAELILlkdSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKIN 968
Cdd:TIGR00606 566 LGYFPNKKQLEDWLHSKSK------EINQTRDRLAKLNK---ELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQD 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 969 KIKlvavkakkELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLdveKERANNFEHRIE 1048
Cdd:TIGR00606 637 EES--------DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL---QEFISDLQSKLR 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1049 DLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQ 1128
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1129 VQLQKQKKQLQKTMQELELVKKDAQQTTlmNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ 1208
Cdd:TIGR00606 786 VCLTDVTIMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1209 SSV---------------------QQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQL 1267
Cdd:TIGR00606 864 SKTnelkseklqigtnlqrrqqfeEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1268 AEITSEKHKIHEHLKTSAEQHQRTLSAYQQR-------VTALQEECRAAKA----EQATVTSEFESYKVRvHNVLKQQKN 1336
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQketelntVNAQLEECEKHQEkineDMRLMRQDIDTQKIQ-ERWLQDNLT 1022
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1337 KSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINvsELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQS 1416
Cdd:TIGR00606 1023 LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEE--NIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAE 1100
|
..
gi 1677531374 1417 EN 1418
Cdd:TIGR00606 1101 EK 1102
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
806-1453 |
1.47e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 806 EKVLELEKEIKCLQEESVVQCEELKSL--LRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVE 883
Cdd:TIGR00618 219 ERKQVLEKELKHLREALQQTQQSHAYLtqKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAH 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 884 EVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPS------VKNDPLSSVKELEEKIENLE 957
Cdd:TIGR00618 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSqeihirDAHEVATSIREISCQQHTLT 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 958 KECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEK 1037
Cdd:TIGR00618 379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1038 ERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILE--VQRAKAMVDKELEAEKLQKEQKIK 1115
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHpnPARQDIDNPGPLTRRMQRGEQTYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1116 EHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIED----LEQEIK 1191
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDmlacEQHALL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1192 IQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKE-----LADSKQAETDHLILQASLKGELEASQQQVEVYKIQ 1266
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQErvrehALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1267 LAEITSEKHKIHEHLKTSAEQhqrtlsayqqrvtaLQEECRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETEG 1346
Cdd:TIGR00618 699 LAQCQTLLRELETHIEEYDRE--------------FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHF 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1347 AKQEREHLEMLID----QLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMK 1422
Cdd:TIGR00618 765 NNNEEVTAALQTGaelsHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
650 660 670
....*....|....*....|....*....|.
gi 1677531374 1423 SEHTQTVSQLTSQNEVLRNSFRDQVRHLQEE 1453
Cdd:TIGR00618 845 GEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
467-729 |
1.61e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.61 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 467 ENLQQEKQEAILNYESlreimEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEK 546
Cdd:COG5022 829 EKKLRETEEVEFSLKA-----EVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLE 903
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 547 LLSQ-QELVPELENtikNLQEKNGVyllsLSQRDTMLKELEGKIN-----SLTEEKDDFINKLknsHEEMDNFHKKCERE 620
Cdd:COG5022 904 LESEiIELKKSLSS---DLIENLEF----KTELIARLKKLLNNIDleegpSIEYVKLPELNKL---HEVESKLKETSEEY 973
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 621 ERLILELGKKVEQTIQYNSELEQKVNELTGG------LEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEvKSLYEEN 694
Cdd:COG5022 974 EDLLKKSTILVREGNKANSELKNFKKELAELskqygaLQESTKQLKELPVEVAELQSASKIISSESTELSIL-KPLQKLK 1052
|
250 260 270
....*....|....*....|....*....|....*.
gi 1677531374 695 NKLSSEKKQLSRDLEVFLSQKED-VILKEHITQLEK 729
Cdd:COG5022 1053 GLLLLENNQLQARYKALKLRRENsLLDDKQLYQLES 1088
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
556-1274 |
1.69e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 556 ELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTI 635
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 636 QYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQlsrdlEVFLSQK 715
Cdd:pfam02463 265 EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK-----EKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 716 EDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINE 795
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 796 EKCNLAFQRDEKVLELEKEIKCLQE---ESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLL-------EMK 865
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGkltEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLlsrqkleERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 866 NANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSS 945
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 946 VKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRK-----------ETQTVKEELESLRSEKDQLSASMRDLIQ 1014
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrakvvegilkdTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1015 GAESYKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQR 1094
Cdd:pfam02463 660 EKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1095 AKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQ 1174
Cdd:pfam02463 740 LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1175 KLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELE 1254
Cdd:pfam02463 820 EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK 899
|
730 740
....*....|....*....|
gi 1677531374 1255 ASQQQVEVYKIQLAEITSEK 1274
Cdd:pfam02463 900 KELEEESQKLNLLEEKENEI 919
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
799-1439 |
1.84e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 799 NLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLlrdyeqEKVLLRKELEEIQSEKEAlqsDLLEMKNANEKTRLENQNL 878
Cdd:TIGR04523 26 NIANKQDTEEKQLEKKLKTIKNELKNKEKELKNL------DKNLNKDEEKINNSNNKI---KILEQQIKDLNDKLKKNKD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 879 LIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKpllEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEK 958
Cdd:TIGR04523 97 KINKLNSDLSKINSEIKNDKEQKNKLEVELNK---LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 959 ECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKE 1038
Cdd:TIGR04523 174 ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1039 RANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQilevqrAKAMVDKELEAEKLQKEQKIKEHA 1118
Cdd:TIGR04523 254 QLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ------KEQDWNKELKSELKNQEKKLEEIQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1119 TTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQ-QTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQ 1197
Cdd:TIGR04523 328 NQISQNNKIISQLNEQISQLKKELTNSESENSEKQrELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLN 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1198 ETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEItsekhki 1277
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI------- 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1278 hehlKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVhnvlkQQKNKSMSQAETEGAKQEREHLEML 1357
Cdd:TIGR04523 481 ----KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI-----EKLESEKKEKESKISDLEDELNKDD 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1358 IDQLKIKLQDSQNNLQINVSELQtlqsEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNE 1437
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELK----QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
|
..
gi 1677531374 1438 VL 1439
Cdd:TIGR04523 628 KL 629
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1046-1260 |
2.25e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1046 RIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELE 1125
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1126 ELQVQLQKQKKQLQKTMQ----ELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETL- 1200
Cdd:COG4942 101 AQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALl 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1677531374 1201 ---QEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQV 1260
Cdd:COG4942 181 aelEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1161-1350 |
2.28e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1161 EIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQssvQQYEEKNTKIKQLLVKTKKELADSKQAEt 1240
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---AEIEERREELGERARALYRSGGSVSYLD- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1241 dhLILQAS----LKGELEASQQQVEVYKIQLAEITSEKHKIhEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATV 1316
Cdd:COG3883 107 --VLLGSEsfsdFLDRLSALSKIADADADLLEELKADKAEL-EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190
....*....|....*....|....*....|....
gi 1677531374 1317 TSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQE 1350
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
736-1307 |
2.35e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 736 EEQDNLNKLLENEQVQKlFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINEEKCNLAFQRDEKVLELEK-- 813
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKad 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 814 EIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQsdllEMKNANEKTRLENQNLLIQVEEVSQTCSKSE 893
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE----EKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 894 IHNEKEKCFIKEHENLKPLLEQKELRD---RRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKI 970
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADeakKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 971 KLVAVKAKKELDSSRKETQTVKEELESLR--SEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIE 1048
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1049 DLTRQLRNSTlQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMvDKELEAEKLQKEQKIKEHATTVNELEELQ 1128
Cdd:PTZ00121 1555 EELKKAEEKK-KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1129 VQLQKQKKQLQKTMQELELVKKDAQQTTLMNmeiadyerlmKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEitslq 1208
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKA----------AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE----- 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1209 ssvQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQH 1288
Cdd:PTZ00121 1698 ---AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
570
....*....|....*....
gi 1677531374 1289 QRTLSAYQQRVTALQEECR 1307
Cdd:PTZ00121 1775 KEKEAVIEEELDEEDEKRR 1793
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
976-1217 |
2.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 976 KAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDvekERANNFEHRIEDLTRQLr 1055
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE---AELAELEKEIAELRAEL- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1056 nstlqcetiNSDNEDLLARIETLQSNAKLLEVQIL-------EVQRAKAMVDKELEAEKlqkeQKIKEHATTVNELEELQ 1128
Cdd:COG4942 100 ---------EAQKEELAELLRALYRLGRQPPLALLlspedflDAVRRLQYLKYLAPARR----EQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1129 VQLQKQKKQLQKTMQELElvkkdAQQTTLmnmeiadyERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ 1208
Cdd:COG4942 167 AELEAERAELEALLAELE-----EERAAL--------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
....*....
gi 1677531374 1209 SSVQQYEEK 1217
Cdd:COG4942 234 AEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
600-1171 |
2.56e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 600 INKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKdqndQKLEKLMVQMKVLSED 679
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 680 KEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDVilkehitqleKKLQLMVEEQDNLNKLLENeqvqklfVKTQL 759
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL----------KELKEKAEEYIKLSEFYEE-------YLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 760 YGFLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINEEKCNLafqrDEKVLELEKEIKCLQE--ESVVQCEELKSLLRDYE 837
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL----EKRLEELEERHELYEEakAKKEELERLKKRLTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 838 QEKvlLRKELEEIQSEKEALQ---SDLLEMKNANEKTRLENQNLLIQVEEVSQTCS--KSEIHNEKEKCFIKE-HENLKP 911
Cdd:PRK03918 386 PEK--LEKELEELEKAKEEIEeeiSKITARIGELKKEIKELKKAIEELKKAKGKCPvcGRELTEEHRKELLEEyTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 912 LLEQKE-----LRDRRAELILLKDSLAKSP--SVKNDPLSSVKELEEKIENLEKECKEKEEKINKiklvavKAKKELDSS 984
Cdd:PRK03918 464 IEKELKeieekERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEELEKKAEEYE------KLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 985 RKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQ--SEQLDVEKE------------RANNFEHRIEDL 1050
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfESVEELEERlkelepfyneylELKDAEKELERE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1051 TRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDK-ELEAEKLQKEQKIKEHATTVNELEELQV 1129
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYlELSRELAGLRAELEELEKRREEIKKTLE 697
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1677531374 1130 QLQKQKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKE 1171
Cdd:PRK03918 698 KLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1141-1347 |
3.40e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 3.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1141 TMQELELVKKDAQQTTL-MNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNT 1219
Cdd:COG3883 24 ELSELQAELEAAQAELDaLQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1220 KIKQLLvkTKKELAD--------SKQAETDHLILQaslkgELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRT 1291
Cdd:COG3883 104 YLDVLL--GSESFSDfldrlsalSKIADADADLLE-----ELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1677531374 1292 LSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETEGA 1347
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
96-732 |
3.84e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 96 KKENIKMKQEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELmavrSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNN 175
Cdd:TIGR04523 133 KKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENEL----NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 176 SEDNVKKLQEEI---EKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANsqhyQKNINSLQEELLQLkaihqEEV 252
Cdd:TIGR04523 209 KIQKNKSLESQIselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ----NKIKKQLSEKQKEL-----EQN 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 253 KELMCQIEASAKEHEAEINKLNELKE-NLVKQCEASEKNIQKKYECELENLRKATSNANQDNQICSILLQENTFVEQVVN 331
Cdd:TIGR04523 280 NKKIKELEKQLNQLKSEISDLNNQKEqDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 332 EKVKHLEDTLKELES---QHSILKDEVTYMNNLKLKLEMDAQHIKDeffhEREDLEFKINELLLAKEEQGCVIEKLKSel 408
Cdd:TIGR04523 360 EKQRELEEKQNEIEKlkkENQSYKQEIKNLESQINDLESKIQNQEK----LNQQKDEQIKKLQQEKELLEKEIERLKE-- 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 409 aglnkqfcyTVEQHNREVQSLKEQ-HQKEISELNETFLSDSEKEKL-TLMFEIQGLKEQCENLQQEKQEAILNYESLREI 486
Cdd:TIGR04523 434 ---------TIIKNNSEIKDLTNQdSVKELIIKNLDNTRESLETQLkVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 487 MEILQTELGESAGKISqEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVpELENTIKNLQE 566
Cdd:TIGR04523 505 KKELEEKVKDLTKKIS-SLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE-ELKQTQKSLKK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 567 KNgvyllslSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVN 646
Cdd:TIGR04523 583 KQ-------EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 647 ELTGGLEETLKEKDQNDQKLEKLMVQMKV-LSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHIT 725
Cdd:TIGR04523 656 EIRNKWPEIIKKIKESKTKIDDIIELMKDwLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIK 735
|
....*..
gi 1677531374 726 QLEKKLQ 732
Cdd:TIGR04523 736 NFNKKFD 742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-349 |
4.06e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 50 ELEKEIEELRSKpvtegtgdiIKALTERLDALLLEKAETEQQCLSLKKEnikmKQEVEDSVTKMGDAHKELEQSHINYVK 129
Cdd:COG1196 236 ELEAELEELEAE---------LEELEAELEELEAELAELEAELEELRLE----LEELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 130 EIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLDATT 209
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 210 DEKKETVTQLQNIIEANSQhyQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEK 289
Cdd:COG1196 383 ELAEELLEALRAAAELAAQ--LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 290 NIQKKYECELENLRKATSNANQDNQIcsillqentfveqvvnEKVKHLEDTLKELESQHS 349
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEEL----------------AEAAARLLLLLEAEADYE 504
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1157-1362 |
5.10e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1157 LMNMEIADYERLMKELNQK----LTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL 1232
Cdd:PHA02562 192 HIQQQIKTYNKNIEEQRKKngenIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1233 AD----------------SKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHE------HLKTSAEQHQR 1290
Cdd:PHA02562 272 EQfqkvikmyekggvcptCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEqskkllELKNKISTNKQ 351
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1677531374 1291 TLSAYQQRVTALQEECRAAKAEQATVTSEFESYkvrVHNVLKQQKNKSmsqaeteGAKQEREHLEMLIDQLK 1362
Cdd:PHA02562 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKL---QDELDKIVKTKS-------ELVKEKYHRGIVTDLLK 413
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
915-1156 |
5.65e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 915 QKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKekeekinkiklvavKAKKELDSSRKETQTVKEE 994
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------------ALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 995 LESLRSEKDQLSASMRDLIQGAesYKNLLLEYEKqseqLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLAR 1074
Cdd:COG4942 92 IAELRAELEAQKEELAELLRAL--YRLGRQPPLA----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1075 IETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQ 1154
Cdd:COG4942 166 RAELEAERAELEALLAELEEER----AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
..
gi 1677531374 1155 TT 1156
Cdd:COG4942 242 RT 243
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1162-1468 |
6.58e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.66 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1162 IADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQeeITSlqssvqqyeekntkikQLLvktkkELADSKQAETD 1241
Cdd:PRK10929 74 IDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQ--VSS----------------QLL-----EKSRQAQQEQD 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1242 HLILQASLKGELeaSQQQVEVYKiQLAEITSeKHKIHEHLKTSAEQHQRtlsayqqrvTALQEECRAAKAeqatVTSEFE 1321
Cdd:PRK10929 131 RAREISDSLSQL--PQQQTEARR-QLNEIER-RLQTLGTPNTPLAQAQL---------TALQAESAALKA----LVDELE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1322 SYKVRVHNvlKQQknksMSQAETEGAKQEREHLEMlidqlkiKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQETV 1401
Cdd:PRK10929 194 LAQLSANN--RQE----LARLRSELAKKRSQQLDA-------YLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSI 260
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1677531374 1402 SKEAELREKLCSI---QSENM-MMKSEHTQTVSQLTSQNEVLrNSFRDQVRHLQEEhrkTV--ETLQQQLSKM 1468
Cdd:PRK10929 261 VAQFKINRELSQAlnqQAQRMdLIASQQRQAASQTLQVRQAL-NTLREQSQWLGVS---NAlgEALRAQVARL 329
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
19-356 |
6.63e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 19 KSKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKPVTEGTGDIIKALTERLDALLLEKAETEQQCLSLKKE 98
Cdd:PTZ00121 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 99 NIKMKQeveDSVTKMGDAHKELEQSHINYVKEIENLKNelMAVRskysedKANLQKQLEEAMNTQLELSEQLKFQNNSED 178
Cdd:PTZ00121 1543 EEKKKA---DELKKAEELKKAEEKKKAEEAKKAEEDKN--MALR------KAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 179 NVKKLQEEIEKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQ 258
Cdd:PTZ00121 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 259 IEASAKEHEA-EINKLNELKENLVKQCEASEK----------NIQKKYECELENLRKATSNANQDNQICSILLQENTFVE 327
Cdd:PTZ00121 1692 EALKKEAEEAkKAEELKKKEAEEKKKAEELKKaeeenkikaeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
|
330 340
....*....|....*....|....*....
gi 1677531374 328 QVVNEKVKHLEDTLKELESQHSILKDEVT 356
Cdd:PTZ00121 1772 EIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
481-783 |
6.67e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 481 ESLREIMEILQtELG-----ESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLqgeneKLLSQQELVP 555
Cdd:PRK05771 16 SYKDEVLEALH-ELGvvhieDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKV-----SVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 556 ELENTIKNLQEKngvyllslsqrdtmLKELEGKINSLTEEKDDfINKLKNSHEEMDNFH---KKCEREERLILELGK-KV 631
Cdd:PRK05771 90 DVEEELEKIEKE--------------IKELEEEISELENEIKE-LEQEIERLEPWGNFDldlSLLLGFKYVSVFVGTvPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 632 EQTIQYNSELEQKVNELTGGLEE-------TLKEKDQNDQK-LEKLMVQMKVLSEdKEVLSAEVKSLYEENNKLSSEKKQ 703
Cdd:PRK05771 155 DKLEELKLESDVENVEYISTDKGyvyvvvvVLKELSDEVEEeLKKLGFERLELEE-EGTPSELIREIKEELEEIEKERES 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 704 LSRDLEVFLSQKEDVIL--KEHITQLEKKLQLM-----------------VEEQDNLNKLLENEQVQKLFVktqlygflk 764
Cdd:PRK05771 234 LLEELKELAKKYLEELLalYEYLEIELERAEALskflktdktfaiegwvpEDRVKKLKELIDKATGGSAYV--------- 304
|
330
....*....|....*....
gi 1677531374 765 emgsEVSEDSEEKDVVNVL 783
Cdd:PRK05771 305 ----EFVEPDEEEEEVPTK 319
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
490-1270 |
7.60e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 7.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 490 LQTELGESagkiSQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRlqgENEkllSQQELVPELENTIKNLQEKNG 569
Cdd:pfam15921 90 LQRRLNES----NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRR---ESQ---SQEDLRNQLQNTVHELEAAKC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 570 VYLLSLSQRDTMLKEL-------EG---KINSLTEEKDDFINKLKNSHEEMDNFHKKcereerlilELGKKVEQTIQyns 639
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLrkmmlshEGvlqEIRSILVDFEEASGKKIYEHDSMSTMHFR---------SLGSAISKILR--- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 640 ELEQKVNELTGGL------EETLKEKDQNdqKLEKLMVQ----MKVLSEDKEVlsaEVKSLYEENNKLSSEKKQLSRDLE 709
Cdd:pfam15921 228 ELDTEISYLKGRIfpvedqLEALKSESQN--KIELLLQQhqdrIEQLISEHEV---EITGLTEKASSARSQANSIQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 710 VFLSQ--KEDVILKEHITQLEKKLQLMVEEQDNLNKLLEN--EQVQKLFVKTQlygflkemgSEVSEDSEEKDVVNvlQA 785
Cdd:pfam15921 303 IIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDkiEELEKQLVLAN---------SELTEARTERDQFS--QE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 786 VGESLAKINEEKCNLafQRDEKVLELEKEikclQEESVVQCEELKSLLRDYeqekvlLRKELEEIQSEKEALQSDLLEMK 865
Cdd:pfam15921 372 SGNLDDQLQKLLADL--HKREKELSLEKE----QNKRLWDRDTGNSITIDH------LRRELDDRNMEVQRLEALLKAMK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 866 NANEKtRLENQNLLIQVEEVSQtcskseihnEKEKCFIKEHENLKPLLeqkelRDRRAELILLKDSLAKSPSVKNDPLSS 945
Cdd:pfam15921 440 SECQG-QMERQMAAIQGKNESL---------EKVSSLTAQLESTKEML-----RKVVEELTAKKMTLESSERTVSDLTAS 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 946 VKELEEKIENLEKECKEKEEKINkiklVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLE 1025
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1026 YEKQSEQLDVEKERannFEHRIEDltrqlRNSTLQCETINSDNEDllARIETLQSNAKLLEVQILEVQRAKAMVDKELEA 1105
Cdd:pfam15921 581 HGRTAGAMQVEKAQ---LEKEIND-----RRLELQEFKILKDKKD--AKIRELEARVSDLELEKVKLVNAGSERLRAVKD 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1106 EKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVkkdaqqTTLMNMEiadyerlMKELNQKLTNKNNKIED 1185
Cdd:pfam15921 651 IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETT------TNKLKMQ-------LKSAQSELEQTRNTLKS 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1186 LE------QEIKIQKQKQETLQE-EITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQ 1258
Cdd:pfam15921 718 MEgsdghaMKVAMGMQKQITAKRgQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
810
....*....|..
gi 1677531374 1259 QVEVYKIQLAEI 1270
Cdd:pfam15921 798 QERRLKEKVANM 809
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
380-1152 |
7.65e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 7.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 380 REDLEFKINELLLAKEEQGCVIEKLKSELAGLnkqfcytvEQHNREVQSLKEQHQKEISELNETFLSDSEKEKLTLMFEI 459
Cdd:TIGR02169 218 KEKREYEGYELLKEKEALERQKEAIERQLASL--------EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 460 QGLKEQCENLQQEKqeailnyESLREIMEILQTELGESAGKIsQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNR 539
Cdd:TIGR02169 290 LRVKEKIGELEAEI-------ASLERSIAEKERELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 540 LQGENEKLLSQQElvpELENTIKNLQEKngvyllsLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCER 619
Cdd:TIGR02169 362 LKEELEDLRAELE---EVDKEFAETRDE-------LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 620 EERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSS 699
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 700 EKKQLSRDLEVFLSQKEDVIL--KEHITQLE----KKLQLMVEEQDN---------------------LNKLLENEQVQK 752
Cdd:TIGR02169 512 VEEVLKASIQGVHGTVAQLGSvgERYATAIEvaagNRLNNVVVEDDAvakeaiellkrrkagratflpLNKMRDERRDLS 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 753 LFVKTQLYGFL-------KEMGSEVSEDSEEKDVVNVLQAVGESLAKI--------------------NEEKCNLAFQRD 805
Cdd:TIGR02169 592 ILSEDGVIGFAvdlvefdPKYEPAFKYVFGDTLVVEDIEAARRLMGKYrmvtlegelfeksgamtggsRAPRGGILFSRS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 806 --EKVLELEKEIKCLQ-EESVVQCE---------ELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRL 873
Cdd:TIGR02169 672 epAELQRLRERLEGLKrELSSLQSElrrienrldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 874 ENQNLLIQVEEVSQTCSKSEIHNEKEKcfiKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKI 953
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLE---EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 954 ENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQL 1033
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1034 DVEKERAnnfEHRIEDLTRQLRNSTLQCETInsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKeLEAEKLQKEQK 1113
Cdd:TIGR02169 909 EAQIEKK---RKRLSELKAKLEALEEELSEI----EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA-LEPVNMLAIQE 980
|
810 820 830
....*....|....*....|....*....|....*....
gi 1677531374 1114 IKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDA 1152
Cdd:TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
332-529 |
8.19e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 332 EKVKHLEDTLKELESQHSILKDEVTymnnlKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEqgcvIEKLKSELAGL 411
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLE-----ALEAELDALQERREALQRLAEYSWDEIDVASAERE----IAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 412 nkqfcytvEQHNREVQSLKEQHQKEISELNETflsdsEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQ 491
Cdd:COG4913 681 --------DASSDDLAALEEQLEELEAELEEL-----EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1677531374 492 TELGE----------SAGKISQEFESMKQQQASDVHELQQKLRTAFTE 529
Cdd:COG4913 748 RALLEerfaaalgdaVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
41-280 |
1.12e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 41 IQKAKSRCTELEKEIEELRSKpvTEGTGDIIKALTERLDALLLEKAETEQQclslKKENIKMKQEVEDSVTKMGDAHKEL 120
Cdd:COG1196 255 LEELEAELAELEAELEELRLE--LEELELELEEAQAEEYELLAELARLEQD----IARLEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 121 EQSHINYVKEIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEIEKIRpgfeEQILY 200
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA----AQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 201 LQKQLDATTDEKKETVTQLQNIIEANSQHYQK--NINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELKE 278
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEeeEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
..
gi 1677531374 279 NL 280
Cdd:COG1196 485 EL 486
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
721-1472 |
1.15e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 721 KEHITQLEKKLQLMVEE-QDNLNKLLENEQVQKLFVKTQLYGF---LKEMGSEVS--------EDSEEKDVVNVLQAVGE 788
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDlQRRLNESNELHEKQKFYLRQSVIDLqtkLQEMQMERDamadirrrESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 789 SLAKINEEKCNLAFQRDEKVLELEKEIkcLQEESVVQceELKSLLRDYEQEK-------------------VLLRKELEE 849
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMM--LSHEGVLQ--EIRSILVDFEEASgkkiyehdsmstmhfrslgSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 850 IQSEKEALQSDLLEMKNANEKTRLENQN---LLIQVEE--VSQTCSKSEIH----NEKEKCFIKEHENLKPLLE--QKEL 918
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSESQNkieLLLQQHQdrIEQLISEHEVEitglTEKASSARSQANSIQSQLEiiQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 919 RDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKienlekeckekeekinkiklvavkakkELDSSRKETQTVKEELESL 998
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYED---------------------------KIEELEKQLVLANSELTEA 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 999 RSEKDQLSASMRDLiqgAESYKNLLLEYEKQSEQLDVEKERANNFEHR-------IEDLTRQLRNSTLQCETINS----- 1066
Cdd:pfam15921 362 RTERDQFSQESGNL---DDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEAllkam 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1067 ------DNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDK---ELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQ 1137
Cdd:pfam15921 439 ksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKvveELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE 518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1138 LQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEeK 1217
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE-K 597
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1218 NTKIKQLLVKTKKELADSKQAETDhlilqaslkgELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQhqrtlsayqq 1297
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIR----------ELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQ---------- 657
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1298 rvtaLQEECRAAKAEQATVTSEFESYKvrvhnvlKQQKNKSmsqaetegakqerEHLEMLIDQLKIKLQDSQNNLQINVS 1377
Cdd:pfam15921 658 ----LLNEVKTSRNELNSLSEDYEVLK-------RNFRNKS-------------EEMETTTNKLKMQLKSAQSELEQTRN 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1378 ELQTLQSEHDTLLERHNKMLQETVSKEAE----------LREKLCSIQSENMMMKSEHTQtVSQLTSQNEVLRNSFRDQV 1447
Cdd:pfam15921 714 TLKSMEGSDGHAMKVAMGMQKQITAKRGQidalqskiqfLEEAMTNANKEKHFLKEEKNK-LSQELSTVATEKNKMAGEL 792
|
810 820
....*....|....*....|....*
gi 1677531374 1448 RHLQEEHRKtvetLQQQLSKMEAQL 1472
Cdd:pfam15921 793 EVLRSQERR----LKEKVANMEVAL 813
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
980-1126 |
1.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 980 ELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLrnstl 1059
Cdd:COG4913 655 EYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL----- 729
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1677531374 1060 qcetinsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEE 1126
Cdd:COG4913 730 ---------DELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEE 787
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
474-1392 |
1.68e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 474 QEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQklrTAFTEKDALLETVNRLQGENEKLLSQQEL 553
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEA---AKCLKEDMLEDSNTQIEQLRKMMLSHEGV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 554 VPELENTIKNLQEKNGVYLLSLSQRDTM-LKELEGKINSLTEEKDDFINKLKNSHEEMDNFHK--KCEREERLILELGKK 630
Cdd:pfam15921 186 LQEIRSILVDFEEASGKKIYEHDSMSTMhFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEalKSESQNKIELLLQQH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 631 VEQTIQYNSELEQkvnELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEV 710
Cdd:pfam15921 266 QDRIEQLISEHEV---EITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYED 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 711 FLSQ--KEDVILKEHITQLEKKLQLMVEEQDNLNkllenEQVQKLFvkTQLYGFLKEMGSEVSEDSEEKDVVNVLQAVGE 788
Cdd:pfam15921 343 KIEEleKQLVLANSELTEARTERDQFSQESGNLD-----DQLQKLL--ADLHKREKELSLEKEQNKRLWDRDTGNSITID 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 789 SLAKINEEKcNLAFQRDEKVL---------ELEKEIKCLQEESVvQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQS 859
Cdd:pfam15921 416 HLRRELDDR-NMEVQRLEALLkamksecqgQMERQMAAIQGKNE-SLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 860 dllemknaNEKTrLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVk 939
Cdd:pfam15921 494 --------SERT-VSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV- 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 940 ndplssVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLiqGAESY 1019
Cdd:pfam15921 564 ------IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL--ELEKV 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1020 KNLLLEYEKQSEQLDVEKERannfehriEDLTRQLRNSTLQCETINSDNEdLLARIETLQSNAKLLEVQILEVQRAKAMV 1099
Cdd:pfam15921 636 KLVNAGSERLRAVKDIKQER--------DQLLNEVKTSRNELNSLSEDYE-VLKRNFRNKSEEMETTTNKLKMQLKSAQS 706
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1100 DKELEAEKLQKEQKIKEHATTVN-ELEELQVQLQKQKKQLQKTMQELELVKKDAQQTTLMNMEiaDYERLMKELNQKLTN 1178
Cdd:pfam15921 707 ELEQTRNTLKSMEGSDGHAMKVAmGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKE--EKNKLSQELSTVATE 784
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1179 KNNkiedLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEladSKQAETDHLILQASLKGELEASQQ 1258
Cdd:pfam15921 785 KNK----MAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE---SVRLKLQHTLDVKELQGPGYTSNS 857
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1259 QVEVYKIQLAEITSEKHKIhehlkTSAEQHQRTLSAYQQRVTALQEEcraakaeqatVTSEFESYKVRVHNVLKQQKNKS 1338
Cdd:pfam15921 858 SMKPRLLQPASFTRTHSNV-----PSSQSTASFLSHHSRKTNALKED----------PTRDLKQLLQELRSVINEEPTVQ 922
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....
gi 1677531374 1339 MSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLER 1392
Cdd:pfam15921 923 LSKAEDKGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSETCSR 976
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1083-1295 |
1.82e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1083 KLLEVQILEVQRAKamvdKELEAEKLQKE----QKIKEHATTVNELEELQVQLQKQKKQLqkTMQELELVKKDAQQttlm 1158
Cdd:PRK05771 24 ALHELGVVHIEDLK----EELSNERLRKLrsllTKLSEALDKLRSYLPKLNPLREEKKKV--SVKSLEELIKDVEE---- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1159 nmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQK-----------------------QKQETLQEEITSLQSSVQQYE 1215
Cdd:PRK05771 94 --ELEKIEKEIKELEEEISELENEIKELEQEIERLEpwgnfdldlslllgfkyvsvfvgTVPEDKLEELKLESDVENVEY 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1216 EKNTKIKQ-LLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSA 1294
Cdd:PRK05771 172 ISTDKGYVyVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLA 251
|
.
gi 1677531374 1295 Y 1295
Cdd:PRK05771 252 L 252
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
843-1410 |
2.26e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 843 LRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTcskSEIHNEKEKCFIKEHENLKPLLEQKELRDRR 922
Cdd:PRK01156 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERL---SIEYNNAMDDYNNLKSALNELSSLEDMKNRY 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 923 AELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRK--------------ET 988
Cdd:PRK01156 255 ESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDaeinkyhaiikklsVL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 989 QTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYE---KQSEQLDVEKERANNFEHRIedLTRQLRNSTL---QCE 1062
Cdd:PRK01156 335 QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIEslkKKIEEYSKNIERMSAFISEI--LKIQEIDPDAikkELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1063 TINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVD---------KELEAEKLqkEQKIKEHATTVNELEELQVQLqk 1133
Cdd:PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgTTLGEEKS--NHIINHYNEKKSRLEEKIREI-- 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1134 qkkqlqktmqELELVKKDAQQTTLMNMEiadyERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITslqssvqQ 1213
Cdd:PRK01156 489 ----------EIEVKDIDEKIVDLKKRK----EYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHD-------K 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1214 YEEKNTKIKQLlvktKKELADSKQAETDHLILQASLKgELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLS 1293
Cdd:PRK01156 548 YEEIKNRYKSL----KLEDLDSKRTSWLNALAVISLI-DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIR 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1294 AYQQRVTALQEEcraakaeqatvTSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQ 1373
Cdd:PRK01156 623 EIENEANNLNNK-----------YNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALD 691
|
570 580 590
....*....|....*....|....*....|....*..
gi 1677531374 1374 INVSELQTLQSEHDTLLERHNKMLQETVSKEAELREK 1410
Cdd:PRK01156 692 DAKANRARLESTIEILRTRINELSDRINDINETLESM 728
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
84-347 |
2.43e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 84 EKAETEQQCLSLKKENIkmkqeVEDSVTKMGDAHKELEQSHINyVKEIENLKNELMAVRSKYSEDKANLQKqleeamntq 163
Cdd:COG5022 853 RSLKAKKRFSLLKKETI-----YLQSAQRVELAERQLQELKID-VKSISSLKLVNLELESEIIELKKSLSS--------- 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 164 lELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLDATTDEK-KETVTQLQNIIEANSQHYQKNINSLqEELL 242
Cdd:COG5022 918 -DLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKlKETSEEYEDLLKKSTILVREGNKAN-SELK 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 243 QLKAIHQEEVKELMcQIEASAKEHEAEINKLNELKENLVKQCEASEKNIQKKYECELENLRKATSNANQDNQICSILLQE 322
Cdd:COG5022 996 NFKKELAELSKQYG-ALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRE 1074
|
250 260
....*....|....*....|....*...
gi 1677531374 323 NTFVEQV---VNEKVKHLEDTLKELESQ 347
Cdd:COG5022 1075 NSLLDDKqlyQLESTENLLKTINVKDLE 1102
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
152-863 |
2.65e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 152 LQKQLEEAMNTqlELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQ 231
Cdd:TIGR02169 216 LLKEKREYEGY--ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 232 KNINSLQEELLQLKAIhQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEaSEKNIQKKYECELENLRKATSNANQ 311
Cdd:TIGR02169 294 EKIGELEAEIASLERS-IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE-EERKRRDKLTEEYAELKEELEDLRA 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 312 DnqicsilLQENTFVEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFfherEDLEFKINELL 391
Cdd:TIGR02169 372 E-------LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI----AGIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 392 LAKEEQGCVIEKLKSELAGLNKQFCyTVEQHNREVQSLKEQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCENLQQ 471
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLS-KYEQELYDLKEEYDRVEKELSKLQRE-LAEAEAQARASEERVRGGRAVEEVLKA 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 472 EKQEAILNYESLREIMEILQTELGESAGK------------ISQEFESMKQQQAS------------------------- 514
Cdd:TIGR02169 519 SIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvveddavAKEAIELLKRRKAGratflplnkmrderrdlsilsedgv 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 515 -----DVHELQQKLRTAFTE--KDAL----LETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDTmLK 583
Cdd:TIGR02169 599 igfavDLVEFDPKYEPAFKYvfGDTLvvedIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAE-LQ 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 584 ELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQND 663
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 664 QKLEKLMVQMKVLSEDKEVLSAEVKSLY-EENNKLSSEKKQLSRDLEvflsqKEDVILKEHITQLEKKLQLMVEEQDNLN 742
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEaRLSHSRIPEIQAELSKLE-----EEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 743 KLLENEQVQKLFVKTQLygflkemgsevsedSEEKDVVNVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEes 822
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQI--------------KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA-- 896
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1677531374 823 vvQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLE 863
Cdd:TIGR02169 897 --QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| DUF4407 |
pfam14362 |
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins ... |
985-1079 |
2.84e-03 |
|
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.
Pssm-ID: 464151 [Multi-domain] Cd Length: 295 Bit Score: 41.85 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 985 RKETQTVKEELESLRSEKDQLSASMRDLIQGA------------------ESYKNLLLEYEKQSEQLDVEKERAN----N 1042
Cdd:pfam14362 132 RARLAELEAQIAALDAEIDAAEARLDALQAEArceldgtpgtgtgvpgdgPVAKTKQAQLDAAQAELAALQAQNDarlaA 211
|
90 100 110
....*....|....*....|....*....|....*..
gi 1677531374 1043 FEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQ 1079
Cdd:pfam14362 212 LRAELARLTAERAAARARSQAAIDGDDGLLARLEALN 248
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1277-1478 |
3.64e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1277 IHEHLKTSAEQHQRTLSAYQQRVTALQEecRAAKAEQAtvtseFESYKVRvHNVLKQQKNKSMSQAETEGAKQEREHLEM 1356
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRK--ELEEAEAA-----LEEFRQK-NGLVDLSEEAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1357 LIDQLKIKLQDSQNNLQINVSELQTLQSehDTLLERHNKMLQETVSKEAELREKLcsiqsenmmmKSEHtQTVSQLTSQN 1436
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY----------TPNH-PDVIALRAQI 300
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1677531374 1437 EVLRNSFRDQVRHLQEEHRKTVETLQQQLSKMEAQLFQLKNE 1478
Cdd:COG3206 301 AALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
401-689 |
3.72e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 401 IEKLKSELAGLNKQfcyTVEQHNREVQSLKEQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNY 480
Cdd:COG1196 222 LKELEAELLLLKLR---ELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 481 ESLREIMEILQ---TELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPEL 557
Cdd:COG1196 298 ARLEQDIARLEerrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 558 ENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQY 637
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1677531374 638 NSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKS 689
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
574-1094 |
3.78e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 3.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 574 SLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGK------KVEQTIQYNSELEQKVNE 647
Cdd:PRK01156 205 QIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTaesdlsMELEKNNYYKELEERHMK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 648 LTGGLEETLKEKDQNDQKLEKlmvQMKVLSEDKEVLSAEVKSlYEENNKLSSEKKQLSRDLEVFLSQKEDviLKEHITQL 727
Cdd:PRK01156 285 IINDPVYKNRNYINDYFKYKN---DIENKKQILSNIDAEINK-YHAIIKKLSVLQKDYNDYIKKKSRYDD--LNNQILEL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 728 ---EKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNV-LQAVGESLAKINEEKCNLAfq 803
Cdd:PRK01156 359 egyEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVkLQDISSKVSSLNQRIRALR-- 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 804 rdEKVLELEKEIKCLQEESVVQC-------EELKSLLRDYEQEKVLLRKELEEIQSEKEAL------QSDLLEMKNANEK 870
Cdd:PRK01156 437 --ENLDELSRNMEMLNGQSVCPVcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIdekivdLKKRKEYLESEEI 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 871 TRLENQNLLIQVEEVSQTCSKSEIHNEKEKCfiKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVK-EL 949
Cdd:PRK01156 515 NKSINEYNKIESARADLEDIKIKINELKDKH--DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSnEI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 950 EEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDliqgaesyknllleYEKQ 1029
Cdd:PRK01156 593 KKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDN--------------YKKQ 658
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677531374 1030 SEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQR 1094
Cdd:PRK01156 659 IAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
317-669 |
4.17e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 317 SILLQENTFVEQVVNEKVKHLEDT---LKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEffheREDLEFKINELLLA 393
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----IENVKSELKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 394 KEEQGCVIEKLKSELAGLNKQFCYT-VEQHNREVQSLKEQHQKEISELNET--FLSDSEKEKLTLMFEIQGLKEQCENLQ 470
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHSrIPEIQAELSKLEEEVSRIEARLREIeqKLNRLTLEKEYLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 471 QEKQEAILNYESLREIMEILQTELGESAGKISQ--------------------EFESMKQQQASDVH-------ELQQKL 523
Cdd:TIGR02169 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDlesrlgdlkkerdeleaqlrELERKIEELEAQIEkkrkrlsELKAKL 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 524 RTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLK---ELEGKINSLTEEKD--- 597
Cdd:TIGR02169 927 EALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKrldELKEKRAKLEEERKail 1006
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1677531374 598 DFINKLKNSHEE--MDNFHKKCEREERLILELGKKVEQTIqynseLEQKVNELTGGLEETLKEKDQNDQKLEKL 669
Cdd:TIGR02169 1007 ERIEEYEKKKREvfMEAFEAINENFNEIFAELSGGTGELI-----LENPDDPFAGGLELSAKPKGKPVQRLEAM 1075
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1182-1392 |
4.29e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1182 KIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQllvktkkeLADSKQAETDHlilqASLKGELEASQQqve 1261
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--------LAEYSWDEIDV----ASAEREIAELEA--- 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1262 vykiQLAEITSEKHKIhEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVhnvlkqqknksmSQ 1341
Cdd:COG4913 676 ----ELERLDASSDDL-AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL------------EA 738
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1677531374 1342 AETEGAKQEREHLEMLIDQLKIK--LQDSQNNLQINVSELQTLQSEHDTLLER 1392
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDavERELRENLEERIDALRARLNRAEEELER 791
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1162-1464 |
4.36e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1162 IADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQyeekntkIKQLLVKTKKELADSKQAEtd 1241
Cdd:PRK04863 832 EADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPR-------LNLLADETLADRVEEIREQ-- 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1242 hliLQASLKGELEASQQQVEVYKI--QLAEITSEKHKiHEHLKTSAEQHQRTLSAYQQRVTALQE--ECRAAKA-EQAtv 1316
Cdd:PRK04863 903 ---LDEAEEAKRFVQQHGNALAQLepIVSVLQSDPEQ-FEQLKQDYQQAQQTQRDAKQQAFALTEvvQRRAHFSyEDA-- 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1317 tsefesykvrvhnvlkqQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKM 1396
Cdd:PRK04863 977 -----------------AEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQEL 1039
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1677531374 1397 LQE----TVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQnevlRNSFRDQVRHLQEEHRKTVETLQQQ 1464
Cdd:PRK04863 1040 KQElqdlGVPADSGAEERARARRDELHARLSANRSRRNQLEKQ----LTFCEAEMDNLTKKLRKLERDYHEM 1107
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1200-1417 |
6.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 6.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1200 LQEEITSLQSSVQQYEEkntkIKQLLVKTKKELADSKQAETDHLILQASL--KGELEASQQQVEVYKIQLAEITSEKHKi 1277
Cdd:COG4913 223 TFEAADALVEHFDDLER----AHEALEDAREQIELLEPIRELAERYAAARerLAELEYLRAALRLWFAQRRLELLEAEL- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1278 hEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEfesykvRVHNVLKQQKNKsmsQAETEGAKQEREHLEML 1357
Cdd:COG4913 298 -EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD------RLEQLEREIERL---ERELEERERRRARLEAL 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1358 IDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSE 1417
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1163-1374 |
6.32e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 6.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1163 ADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLlvKTKKELADSKQAETDH 1242
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL--REELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1243 LILQASLKGELEASQQQVEVYKIQLAEItsekhkihehlktsaEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFES 1322
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEEL---------------RELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1677531374 1323 YKVRVHNVLKQQKNKsmSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQI 1374
Cdd:COG4717 196 DLAEELEELQQRLAE--LEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
600-1291 |
7.39e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 600 INKLKNSHEEMDNFHKKCEREERLILELGKKV--------EQTIQYNSELEQKVNELTGGLEeTLKEKDQNDQ-KLEKLM 670
Cdd:pfam12128 250 FNTLESAELRLSHLHFGYKSDETLIASRQEERqetsaelnQLLRTLDDQWKEKRDELNGELS-AADAAVAKDRsELEALE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 671 VQMKV-LSEDKEVLSAEVkslyEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHITQLEKKLQLmVEEQDNLNKLLENEQ 749
Cdd:pfam12128 329 DQHGAfLDADIETAAADQ----EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQN-NRDIAGIKDKLAKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 750 VQKlfvktqlygflkEMGSEVSEdseekdvvNVLQAVgESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEEL 829
Cdd:pfam12128 404 EAR------------DRQLAVAE--------DDLQAL-ESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPEL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 830 KSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIH-NEKEKCFIKEHEN 908
Cdd:pfam12128 463 LLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlFPQAGTLLHFLRK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 909 LKPLLEQKELRDRRAELILLKD---SLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINkiklvAVKAKKELDSSR 985
Cdd:pfam12128 543 EAPDWEQSIGKVISPELLHRTDldpEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRER-----LDKAEEALQSAR 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 986 KETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLL--LEYEKQSEQLDVEK---ERANNFEHRIEDLTRQLRNSTLQ 1060
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEKASREETFARTALKNARLDLrrLFDEKQSEKDKKNKalaERKDSANERLNSLEAQLKQLDKK 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1061 CETInSDNEDLLARIETLQSNAKLLEVqILEVQRAKAMVDKELEAEKLQKEQKIK----EHATTVNELEELQVQLQKQKK 1136
Cdd:pfam12128 698 HQAW-LEEQKEQKREARTEKQAYWQVV-EGALDAQLALLKAAIAARRSGAKAELKaletWYKRDLASLGVDPDVIAKLKR 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1137 QLQKTMQELELVKKDAQqttlmnmEIADYERLMKE--------LNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ 1208
Cdd:pfam12128 776 EIRTLERKIERIAVRRQ-------EVLRYFDWYQEtwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEMER 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 1209 SSVQQYEEKNTKIKQLLVKTKKELADSKQAETDhlilqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQH 1288
Cdd:pfam12128 849 KASEKQQVRLSENLRGLRCEMSKLATLKEDANS-----EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADH 923
|
...
gi 1677531374 1289 QRT 1291
Cdd:pfam12128 924 SGS 926
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
210-457 |
9.64e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 9.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 210 DEKKETVTQLQN-----IIEANSQ-------HYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELK 277
Cdd:PRK05771 16 SYKDEVLEALHElgvvhIEDLKEElsnerlrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 278 ENLVKQCEASEKNI------QKKYECELENLRKaTSNANQDNqicsILLQENTFVEQVVNEKVKHLEDTLKELESQH--- 348
Cdd:PRK05771 96 EKIEKEIKELEEEIseleneIKELEQEIERLEP-WGNFDLDL----SLLLGFKYVSVFVGTVPEDKLEELKLESDVEnve 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 349 --SILKDEVTYM-NNLKLKlemdaqhiKDEFFHEREDLEFKINELL---LAKEeqgcVIEKLKSELAGLNKQfcytVEQH 422
Cdd:PRK05771 171 yiSTDKGYVYVVvVVLKEL--------SDEVEEELKKLGFERLELEeegTPSE----LIREIKEELEEIEKE----RESL 234
|
250 260 270
....*....|....*....|....*....|....*
gi 1677531374 423 NREVQSLKEQHQKEISELNETFLSDSEKEKLTLMF 457
Cdd:PRK05771 235 LEELKELAKKYLEELLALYEYLEIELERAEALSKF 269
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
516-895 |
9.94e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 516 VHELQQKLRTAFTEK--DALLETVNRLQGENEKLLSQQELVPEL-ENTIKNLQEkngvyLLSLSQRDTMLKELEGKINSL 592
Cdd:COG5022 748 ATRIQRAIRGRYLRRryLQALKRIKKIQVIQHGFRLRRLVDYELkWRLFIKLQP-----LLSLLGSRKEYRSYLACIIKL 822
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 593 TeekddfiNKLKnsheemdnfhKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQndQKLEKLMVQ 672
Cdd:COG5022 823 Q-------KTIK----------REKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSA--QRVELAERQ 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 673 MKVLSEDKEvlsaEVKSLYEENNKLSSEKKQLSRDLEVFLsQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQK 752
Cdd:COG5022 884 LQELKIDVK----SISSLKLVNLELESEIIELKKSLSSDL-IENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNK 958
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677531374 753 LF--------VKTQLYGFLKEMGSEVSEDSEEKD-VVNVLQAVGE--SLAKINEEKCNLAFQRDEKVLELEKEIK--CLQ 819
Cdd:COG5022 959 LHevesklkeTSEEYEDLLKKSTILVREGNKANSeLKNFKKELAElsKQYGALQESTKQLKELPVEVAELQSASKiiSSE 1038
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1677531374 820 EESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNAnEKTRLENQNLLIQVEEVSQTCSKSEIH 895
Cdd:COG5022 1039 STELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQL-ESTENLLKTINVKDLEVTNRNLVKPAN 1113
|
|
| |
