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Conserved domains on  [gi|126165893|ref|NP_849095|]
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ribosomal protein S7 (chloroplast) [Cyanidioschyzon merolae strain 10D]

Protein Classification

uS7_Chloroplast domain-containing protein( domain architecture ID 10201919)

uS7_Chloroplast domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 8-153 4.61e-83

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271250  Cd Length: 146  Bit Score: 240.64  E-value: 4.61e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893   8 TDQGMTDQSMKSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVP 87
Cdd:cd14871    1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 126165893  88 QEVKPYTGINNALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHY 153
Cdd:cd14871   81 VEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
 
Name Accession Description Interval E-value
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 8-153 4.61e-83

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 240.64  E-value: 4.61e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893   8 TDQGMTDQSMKSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVP 87
Cdd:cd14871    1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 126165893  88 QEVKPYTGINNALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHY 153
Cdd:cd14871   81 VEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
rps7 CHL00053
ribosomal protein S7
 12-154 1.00e-80

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 235.16  E-value: 1.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  12 MTDQSMKSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVK 91
Cdd:CHL00053  13 KPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRVGGSTYQVPIEIG 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 126165893  92 PYTGINNALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:CHL00053  93 STRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 18-154 3.46e-71

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 211.07  E-value: 3.46e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:COG0049   19 NSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQA 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 126165893  98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:COG0049   99 LAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYR 155
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-148 1.59e-62

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 187.97  E-value: 1.59e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893   18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:pfam00177   2 NSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 126165893   98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANK 148
Cdd:pfam00177  82 LALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 18-154 1.16e-58

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 179.03  E-value: 1.16e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893   18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:TIGR01029  17 GSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYA 96

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 126165893   98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:TIGR01029  97 LAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
 
Name Accession Description Interval E-value
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 8-153 4.61e-83

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 240.64  E-value: 4.61e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893   8 TDQGMTDQSMKSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVP 87
Cdd:cd14871    1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 126165893  88 QEVKPYTGINNALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHY 153
Cdd:cd14871   81 VEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
rps7 CHL00053
ribosomal protein S7
 12-154 1.00e-80

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 235.16  E-value: 1.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  12 MTDQSMKSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVK 91
Cdd:CHL00053  13 KPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRVGGSTYQVPIEIG 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 126165893  92 PYTGINNALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:CHL00053  93 STRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 18-154 3.46e-71

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 211.07  E-value: 3.46e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:COG0049   19 NSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQA 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 126165893  98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:COG0049   99 LAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYR 155
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 18-154 1.55e-68

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 204.18  E-value: 1.55e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:PRK05302  19 GSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQA 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 126165893  98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:PRK05302  99 LAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYR 155
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 18-148 5.40e-63

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 189.58  E-value: 5.40e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:cd14869    8 NSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEVRPERRQS 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 126165893  98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANK 148
Cdd:cd14869   88 LALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-148 1.59e-62

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 187.97  E-value: 1.59e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893   18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:pfam00177   2 NSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 126165893   98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANK 148
Cdd:pfam00177  82 LALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 18-154 1.16e-58

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 179.03  E-value: 1.16e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893   18 KSRLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:TIGR01029  17 GSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYA 96

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 126165893   98 NALRWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:TIGR01029  97 LAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 30-154 1.22e-31

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 110.16  E-value: 1.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  30 LRKGKKSLARRIVYEA---LKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGINNALRWIVKY 106
Cdd:cd15484   12 MKKGKKTKARTILFKTfhlLKQKQSAQTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQETLAIRWILEA 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 126165893 107 AKDR------SGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:cd15484   92 AKKKqrkqskKRYSFAYCLADEILDASKKQGKARQKRDELHKLAEANRSLAHYR 145
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 21-154 3.11e-31

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 110.80  E-value: 3.11e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  21 LVELLIVHVLRKGKKSLARRIVYEALKRI-----EERNQQSG----------VLMLEQAVSQVMPLVCVKARRVGGATYQ 85
Cdd:cd14870   50 LVSKFINMMMKKGNKELAREIVEKTLENIkriqlEKYHKATDeekesielnpLVIFHKAVENCKPLLGLTSVKRGGKTYQ 129

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  86 VPQEVKPYTGINNALRWIVKYAKDRSGK-SMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANKAFAHYR 154
Cdd:cd14870  130 VPVPITPNRARFLAMKWLIEACREKKRKiRFPEKLARELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 21-148 1.39e-30

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 106.96  E-value: 1.39e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  21 LVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGINNAL 100
Cdd:cd00323    3 LLKKFINILMKDGKKSKAEKIFSKALKILKKKTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSLAI 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 126165893 101 RWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEANK 148
Cdd:cd00323   83 KWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKLAEANR 130
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 21-147 2.51e-22

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 86.47  E-value: 2.51e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  21 LVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGINNAL 100
Cdd:cd14868   24 LLEQLTNLIMKHGKKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPLVKIKSQKKGAKNVQVPVPLNERQRRRKAI 103

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 126165893 101 RWIVKYAKDRSGKSMAIKLAAEIWDAAHGTGGAIRKKEETHRMAEAN 147
Cdd:cd14868  104 KWILEASDKRPGKSFSERLAEEIIAVVEGTSSALEKKEQVHKLAVAN 150
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 21-148 1.02e-13

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 64.88  E-value: 1.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  21 LVELLIVHVLRK----GKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGI 96
Cdd:cd14867   49 IVERLINSLMMHgrntGKKLMAYRIVKHAFEIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRV 128

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 126165893  97 NNALRWIVKYAKD---RSGKSMAIKLAAEIWDAAHGTGG--AIRKKEETHRMAEANK 148
Cdd:cd14867  129 NQALRLIATGAREaafRNIKSIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 185
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 22-146 3.65e-11

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 58.37  E-value: 3.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  22 VELLIVHVLRK----GKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLVCVKARRVGGATYQVPQEVKPYTGIN 97
Cdd:PRK04027  60 VERLINKLMRTerntGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVD 139

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 126165893  98 NALRWIVKYAKD---RSGKSMAIKLAAEIWDAAHGTGG--AIRKKEETHRMAEA 146
Cdd:PRK04027 140 LALRFIAEGARQasfKNKKSIEEALAEEIIAAANNDPKsyAVRKKEEIERVAKS 193
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 20-148 1.87e-08

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 50.92  E-value: 1.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126165893  20 RLVELLIVHVLRKGKKSLARRIVYEALKRIEERNQQSGVLMLEQAVSQVMPLvcVKARRVG--GATYQVPQEVKPYTGIN 97
Cdd:PTZ00091  60 RLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPR--EDSTRVGsgGVVRRQAVDVSPLRRVN 137

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 126165893  98 NALRWIVKYAKD---RSGKSMAIKLAAEIWDAAHGTGG--AIRKKEETHRMAEANK 148
Cdd:PTZ00091 138 QAIYLICKGAREaafRNIKTIAECLADEIINASKESSNsyAIKKKDEVERVAKANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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